Prupe.7G030900_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000094
Physical Location & Seq
Reverse (-)
5686742 .. 5687814
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G030900.1

Sequence Viewer

Length: 861 bp
ATGAACAACCCATATGGAGGTGATAAGACCCGTGGCATAGGGGAAGTTCTTACTCGTGCAGAGTTTGAGACCCTCTTTGCGGTATTGGTTGAGAGACTTCCTCTCCTGGAAAGCAACGATGAGTCTGAAGAAGAATTCCAAGAACAACCCCCGATCGCACCTAATCAGAATAATCATAACCAATACATGGACGATTTTCGGATTAAGGCTGATATTCCATACTTTAATGGTCACCTACAGATTGAAGACTTTCTTGACTGGTTGGTAGAGGTGGAGTGTTTCTTCGAGATTATGGAGGTTCTAGAGACGAAGATGGTGAAGACCGCCTTTCATCTAAATGGTAGTGCGGCTCAACTGATGATGGGGAGATTCCTACATGCCGATTATGAGCAGTACCTGTATCGGCTTTACCACAATTGCCACCAAGGCAATCAGACCGTTTCTGAGTATATGGATGAATTTTTGCATTTGGCTAAGCGCAATAATTTGGAGGAAACAGATGGTCAGATGGTCTCTTGGTATATCACTTGGTTGAGAAGTTCTTTGCATGAGAAAATTGGGCTTCAGATTTTGTGGACAGTTCATAAGGCACAAAGTATGGCATTGAAGGCCGAATTACTAGAGAAAGATAAGCGTATTGGGTTGAGCATTAGTGGTATCCAGAAGAGCAGTTATGAACCCTCTGCTCCATCCATGGAGAAAAACAAGGACGAAGGTAGCAACATAAATTGGGGAGGAGATCACAACAAGATGAGCAATGCTTATGCTAGGCCGACGAATGATATTTGTTATAGGTGTTCCAAACCAGGGCATCACTCCAATGAGTGCCCAACCTATAACAAACAGGTTAATCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

33.15

Weight (kDa)

5.23

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AciI CCGC 3 cut(s) 80, 324, 347
AcsI RAATTY 2 cut(s) 134, 458
AcuI CTGAAG 2 cut(s) 147, 548
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 4 cut(s) 17, 79, 187, 807
AgsI TTSAA 2 cut(s) 245, 607
AjnI CCWGG 2 cut(s) 105, 805
Alw26I GTCTC 4 cut(s) 62, 88, 299, 517
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 2 cut(s) 609, 770
ApoI RAATTY 2 cut(s) 134, 458
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 3 cut(s) 32, 224, 328
BaeGI GKGCMC 1 cut(s) 830
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 252, 326
BccI CCATC 5 cut(s) 307, 355, 494, 502, 697
BciT130I CCWGG 2 cut(s) 107, 807
BciVI GTATCC 1 cut(s) 668
BcoDI GTCTC 4 cut(s) 62, 88, 299, 517
BfaI CTAG 4 cut(s) 302, 620, 768, 854
BfmI CTRYAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 426
BisI GCNGC 1 cut(s) 348
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 107, 807
BmrFI CCNGG 2 cut(s) 107, 807
BmsI GCATC 1 cut(s) 820
BpiI GAAGAC 2 cut(s) 252, 326
BplI GAGNNNNNCTC 2 cut(s) 85, 117
Bpu1102I GCTNAGC 1 cut(s) 474
BsaI GGTCTC 2 cut(s) 62, 517
BsaJI CCNNGG 4 cut(s) 31, 424, 693, 806
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 79, 187, 807
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 2 cut(s) 107, 807
BseDI CCNNGG 4 cut(s) 31, 424, 693, 806
BseGI GGATG 2 cut(s) 460, 689
BseLI CCNNNNNNNGG 4 cut(s) 17, 79, 187, 807
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 750
BseSI GKGCMC 1 cut(s) 830
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 611, 772
BsiEI CGRYCG 1 cut(s) 156
BslI CCNNNNNNNGG 4 cut(s) 17, 79, 187, 807
BsmAI GTCTC 4 cut(s) 62, 88, 299, 517
BsmBI CGTCTC 1 cut(s) 299
BsnI GGCC 2 cut(s) 611, 772
Bso31I GGTCTC 2 cut(s) 62, 517
Bsp1286I GDGCHC 1 cut(s) 830
Bsp143I GATC 2 cut(s) 153, 739
Bsp1720I GCTNAGC 1 cut(s) 474
Bsp19I CCATGG 1 cut(s) 693
BspACI CCGC 3 cut(s) 80, 324, 347
BspANI GGCC 2 cut(s) 611, 772
BspCNI CTCAG 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 659
BspTNI GGTCTC 2 cut(s) 62, 517
BsrDI GCAATG 1 cut(s) 763
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 31, 424, 693, 806
BssMI GATC 2 cut(s) 153, 739
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 2 cut(s) 424, 693
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 107, 807
Bst4CI ACNGT 2 cut(s) 439, 580
Bst6I CTCTTC 1 cut(s) 659
BstDEI CTNAG 2 cut(s) 444, 474
BstDSI CCRYGG 2 cut(s) 31, 693
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 2 cut(s) 460, 689
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 2 cut(s) 156, 742
BstMAI GTCTC 4 cut(s) 62, 88, 299, 517
BstMBI GATC 2 cut(s) 153, 739
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 426, 608
BstNI CCWGG 2 cut(s) 107, 807
BstNSI RCATGY 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 105, 805
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 830
BstV2I GAAGAC 2 cut(s) 252, 326
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 2 cut(s) 611, 772
BtgI CCRYGG 2 cut(s) 31, 693
BtsCI GGATG 2 cut(s) 460, 689
CaiI CAGNNNCTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 394
CviAII CATG 4 cut(s) 187, 377, 548, 694
CviJI RGCY 7 cut(s) 209, 350, 406, 473, 562, 611, 772
CviKI_1 RGCY 7 cut(s) 209, 350, 406, 473, 562, 611, 772
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 444, 474
DpnI GATC 2 cut(s) 155, 741
DpnII GATC 2 cut(s) 153, 739
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 424, 693
Eco31I GGTCTC 2 cut(s) 62, 517
Eco57I CTGAAG 2 cut(s) 147, 548
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 105, 805
EcoT14I CCWWGG 2 cut(s) 424, 693
ErhI CCWWGG 2 cut(s) 424, 693
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 4 cut(s) 190, 380, 551, 697
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 311, 343
FatI CATG 4 cut(s) 186, 376, 547, 693
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 2 cut(s) 467, 676
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 4 cut(s) 302, 620, 768, 854
GlaI GCGC 1 cut(s) 479
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 2 cut(s) 611, 772
HhaI GCGC 1 cut(s) 480
Hin1II CATG 4 cut(s) 190, 380, 551, 697
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HinfI GANTC 2 cut(s) 122, 369
HphI GGTGA 3 cut(s) 32, 224, 328
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 7 cut(s) 127, 168, 201, 435, 445, 507, 567
Hpy188III TCNNGA 4 cut(s) 254, 286, 302, 661
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 2 cut(s) 601, 707
HpyCH4III ACNGT 2 cut(s) 439, 580
HpyCH4V TGCA 3 cut(s) 59, 466, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 608
HpyF3I CTNAG 2 cut(s) 444, 474
Hsp92II CATG 4 cut(s) 190, 380, 551, 697
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 153, 739
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 8 cut(s) 92, 119, 244, 410, 674, 792, 819, 830
LweI GCATC 1 cut(s) 820
MaeI CTAG 4 cut(s) 302, 620, 768, 854
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 155, 741
MboI GATC 2 cut(s) 153, 739
MboII GAAGA 7 cut(s) 140, 143, 257, 274, 322, 331, 676
MfeI CAATTG 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 830
MluCI AATT 7 cut(s) 134, 415, 458, 484, 555, 614, 727
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 8 cut(s) 11, 83, 111, 262, 289, 484, 691, 728
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 3 cut(s) 204, 225, 849
MslI CAYNNNNRTG 2 cut(s) 336, 819
MspR9I CCNGG 2 cut(s) 107, 807
MunI CAATTG 1 cut(s) 415
MvaI CCWGG 2 cut(s) 107, 807
MwoI GCNNNNNNNGC 2 cut(s) 426, 608
NcoI CCATGG 1 cut(s) 693
NdeI CATATG 1 cut(s) 13
NdeII GATC 2 cut(s) 153, 739
NlaIII CATG 4 cut(s) 190, 380, 551, 697
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 349
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 105, 805
PspEI GGTNACC 1 cut(s) 230
PspGI CCWGG 2 cut(s) 105, 805
PstNI CAGNNNCTG 1 cut(s) 397
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 336, 819
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 204, 225, 849
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 153, 739
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 107, 807
SduI GDGCHC 1 cut(s) 830
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 336, 819
Sse9I AATT 7 cut(s) 134, 415, 458, 484, 555, 614, 727
SsiI CCGC 3 cut(s) 80, 324, 347
SspMI CTAG 4 cut(s) 302, 620, 768, 854
StyD4I CCNGG 2 cut(s) 105, 805
StyI CCWWGG 2 cut(s) 424, 693
TaaI ACNGT 2 cut(s) 439, 580
TaqI TCGA 1 cut(s) 285
TasI AATT 7 cut(s) 134, 415, 458, 484, 555, 614, 727
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 3 cut(s) 204, 225, 849
Tru9I TTAA 3 cut(s) 204, 225, 849
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 17, 320, 471, 572, 690
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 2 cut(s) 134, 458
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 4 cut(s) 302, 620, 768, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.