FvH4_6g23303

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Reverse (-)
17308017 .. 17309738
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23303.t1

Sequence Viewer

Length: 1722 bp
ATGGATCCTCGGCGAGGGAGAGCTAGAGGCCGAGGTAGGGCCAGAGGGGCTGGTAGAGCCAGAGGGGCAGGTGGGGCTAGAGGCAGAGGTAGGGCTCCACCTGTGGATGACTTCTTTGAGGAGGAGGTAGTGTTGGAGGTACCAGTGCCAGTTGCGGTAGATGATGGTCTGCGATTGGCCAGGCTGGCTCAGGGTATCATCAGGTTAGGAGCGCCTTCCTTTCTTGGAGGTACAGACTACCTCGTAGCTAATCATTGGATAGAGGGCATTGAGACATACTTCACCATGATCACGTGTACGGAGATCGAGAAGATGCGTATTGCTACGTTTCTTCTCAAGGATGAGGCACGAGTATGGTGGAGTGGGGTAGAGAGATCTCGAGATGTGACCGCCCTGACTTGGGAGGGGTTTGTTCAGCTCTTTCGGGAGAAGTATTTTCCTGATACAGTGAGGGAGCAGTTGGACCTTGAGTTCATAGCTCTGGTGCAGGGCCTGATGAGTGTCAGGGATTATGAGGCCCATTTTTCTCAGTTGTATCGCTTTGCTAGAGAGATGGATGAAGTCGACTTGGCACGGAAGTTCATTCGGGGTTTGAGGCATAAGCTCCGGAAGTTGGTGACTTCCCACCGGTTTGCTATTCTAGCAGAAGCAGTGGAGAGTGCCCTTGCAGTTGAGCAAGAGGAGGTGATGCATGAGATGGAGAGGCAGAGAGATGTCCAGGGGAAGGGCAAGGCCCTAGCGGGGAGTAGCAGCTCAGGGGACCACAGAGGTGGTTATGGGAAGAGGCGGCAGACTCATCAGCTGGCTCCAGTTAGAGCAGCAGCTGCACCTATTAGGTCTCCACCTATTAGGCAGGCAGCACCATTGAAGTGTTTCAACTGTGGTGAGCCGGGCCACTTCTCTTCGGCATGCACGAAGCCTAAGAGGCAAGAATGCTTCACTTGTGGGCAGGCAGGCCATTTTGCCAGAGATTGCACCCGACCTCAGGCTGGAGGGCAGGGTGTTCAGCAGAGACCATTACTTCCAGCGCCAGCCAGAGTATATGCCATTGGTCAGCGTGGTGCAGGAGTGGAAGGTACCATTCTTGTTTATGATCTGCTTGCTTCCATTTTGTTTGACACGGGGGCAACCCATTCCTTCATATCTAGCTCAGTGGTGAGGGCATTAGGCTTGACTCCGACGCCGCTTACTAGATCCTTGTGTGTTTCTTCACCTCTCGGTGTTTCTATAGAGCTTGGCACTTTGTGTGATGCTTGCCCTATAGTGATTAGTGGGAGAGAGTTCCTTGCTTCCCTGATTGTGATTCCAGACCGCTCTTATGATGTGATTTTGGGAGTGGATTGGCTAAGGCCAAACCATACCTTGATTGATTGTTTTGGTATGGTAGTGTCATTCCACATTCCTGGACAGCCAAGCTTTCGCTATCTTTGTCATAGGTTGGACACGACCATGTGGGAAGGAGTGTTGGCACACATTGAGGCTACCGGTAGTACCGTGGGTATTGCGGATATTGCAGTAGTCTCTGAGTTTAGTGACGTGTTCCAGGAGATTCCAGGGTTACCTCCTAAGAGGGTAGTGGAGTTTGCTATCGATGTGGTACCAGGTACTTCACCGGTATCAAAGACTCCTTATCAAATGGGGAGAACTGAACTTCAGGAGTTGAATGTTCAGATTGAGGGTCTTCTCGAGCAGGGATTCATTAGACCAAGCACCTTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 Retrotrans_gag zf-CCHC

Protein Analysis

574

Amino Acids

63.04

Weight (kDa)

7.97

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 73 - 223 1.5e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 106 - 200 1.8e-18 Retrotransposon gag protein
zf-CCHC PF00098 290 - 306 9.9e-07 Zinc knuckle
zf-CCHC PF00098 311 - 326 8.8e-07 Zinc knuckle
RVP_2 PF08284 357 - 464 3.5e-30 Retroviral aspartyl protease
gag-asp_proteas PF13975 370 - 450 4e-06 gag-polyprotein putative aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
Acc65I GGTACC 3 cut(s) 139, 1076, 1597
AccB1I GGYRCC 3 cut(s) 139, 1076, 1597
AccBSI CCGCTC 1 cut(s) 1314
AccI GTMKAC 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 7 cut(s) 155, 390, 740, 787, 1184, 1312, 1505
AclWI GGATC 2 cut(s) 12, 1188
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 1637
AcvI CACGTG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 1181
AdeI CACNNNGTG 1 cut(s) 1245
AfaI GTAC 7 cut(s) 141, 232, 298, 1078, 1492, 1599, 1606
AfiI CCNNNNNNNGG 9 cut(s) 14, 37, 399, 400, 613, 724, 741, 985, 989
AflIII ACRYGT 2 cut(s) 293, 1536
AgeI ACCGGT 3 cut(s) 627, 1484, 1612
AgsI TTSAA 3 cut(s) 868, 877, 1663
AjiI CACGTC 1 cut(s) 1537
AjnI CCWGG 6 cut(s) 179, 717, 1402, 1542, 1552, 1600
AleI CACNNNNGTG 1 cut(s) 768
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
Alw26I GTCTC 4 cut(s) 266, 843, 1006, 1525
AlwI GGATC 2 cut(s) 12, 1188
AlwNI CAGNNNCTG 2 cut(s) 493, 824
Ama87I CYCGRG 2 cut(s) 378, 1685
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 9 cut(s) 28, 39, 177, 490, 516, 732, 892, 955, 1349
ApeKI GCWGC 5 cut(s) 750, 818, 821, 824, 857
AsiGI ACCGGT 3 cut(s) 627, 1484, 1612
Asp700I GAANNNNTTC 1 cut(s) 872
Asp718I GGTACC 3 cut(s) 139, 1076, 1597
AspLEI GCGC 2 cut(s) 214, 1030
AspS9I GGNCC 7 cut(s) 39, 463, 490, 517, 733, 760, 892
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 7 cut(s) 274, 628, 697, 896, 1168, 1203, 1602
AvaI CYCGRG 2 cut(s) 378, 1685
AvaII GGWCC 2 cut(s) 463, 760
AxyI CCTNAGG 1 cut(s) 984
BaeGI GKGCMC 1 cut(s) 664
BalI TGGCCA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 139, 1076, 1597
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 348
BbrPI CACGTG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 1673
BbvI GCAGC 5 cut(s) 762, 811, 830, 833, 869
BccI CCATC 3 cut(s) 158, 547, 691
BciT130I CCWGG 6 cut(s) 181, 719, 1404, 1544, 1554, 1602
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 4 cut(s) 266, 843, 1006, 1525
BfaI CTAG 7 cut(s) 24, 78, 546, 641, 737, 1146, 1191
BfmI CTRYAG 2 cut(s) 1227, 1260
BfoI RGCGCY 2 cut(s) 215, 1031
BfuAI ACCTGC 1 cut(s) 59
BglI GCCNNNNNGGC 4 cut(s) 47, 65, 185, 925
BglII AGATCT 1 cut(s) 374
BisI GCNGC 7 cut(s) 751, 788, 819, 822, 825, 858, 1184
BlsI GCNGC 7 cut(s) 752, 789, 820, 823, 826, 859, 1185
Bme1390I CCNGG 7 cut(s) 181, 719, 891, 1404, 1544, 1554, 1602
Bme18I GGWCC 2 cut(s) 463, 760
BmeT110I CYCGRG 2 cut(s) 378, 1685
BmgBI CACGTC 1 cut(s) 1537
BmgT120I GGNCC 7 cut(s) 39, 463, 490, 517, 733, 760, 892
BmiI GGNNCC 7 cut(s) 6, 96, 141, 761, 807, 1078, 1599
BmrFI CCNGG 7 cut(s) 181, 719, 891, 1404, 1544, 1554, 1602
BmsI GCATC 3 cut(s) 303, 678, 1240
BpiI GAAGAC 1 cut(s) 1673
BpmI CTGGAG 2 cut(s) 792, 1011
Bpu10I CCTNAGC 3 cut(s) 189, 754, 1346
BpuEI CTTGAG 2 cut(s) 320, 488
BpuMI CCSGG 1 cut(s) 891
Bsa29I ATCGAT 1 cut(s) 1590
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 1181
BsaI GGTCTC 2 cut(s) 843, 1006
BsaJI CCNNGG 5 cut(s) 8, 31, 718, 1494, 1553
BsaWI WCCGGW 4 cut(s) 606, 627, 1484, 1612
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 9 cut(s) 14, 37, 399, 400, 613, 724, 741, 985, 989
Bse118I RCCGGY 3 cut(s) 627, 1484, 1612
Bse1I ACTGG 3 cut(s) 143, 149, 809
Bse21I CCTNAGG 1 cut(s) 984
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 6 cut(s) 181, 719, 1404, 1544, 1554, 1602
BseCI ATCGAT 1 cut(s) 1590
BseDI CCNNGG 5 cut(s) 8, 31, 718, 1494, 1553
BseGI GGATG 3 cut(s) 112, 346, 562
BseLI CCNNNNNNNGG 9 cut(s) 14, 37, 399, 400, 613, 724, 741, 985, 989
BseMII CTCAG 6 cut(s) 203, 542, 768, 998, 1164, 1515
BseNI ACTGG 3 cut(s) 143, 149, 809
BseRI GAGGAG 3 cut(s) 134, 137, 695
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 5 cut(s) 762, 811, 830, 833, 869
BsgI GTGCAG 3 cut(s) 506, 810, 1083
BshFI GGCC 9 cut(s) 30, 41, 179, 492, 518, 734, 894, 957, 1351
BshNI GGYRCC 3 cut(s) 139, 1076, 1597
BshTI ACCGGT 3 cut(s) 627, 1484, 1612
BshVI ATCGAT 1 cut(s) 1590
BsiHKCI CYCGRG 2 cut(s) 378, 1685
BsiSI CCGG 5 cut(s) 607, 628, 890, 1485, 1613
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 9 cut(s) 14, 37, 399, 400, 613, 724, 741, 985, 989
BsmAI GTCTC 4 cut(s) 266, 843, 1006, 1525
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 938
BsnI GGCC 9 cut(s) 30, 41, 179, 492, 518, 734, 894, 957, 1351
Bso31I GGTCTC 2 cut(s) 843, 1006
BsoBI CYCGRG 2 cut(s) 378, 1685
Bsp1286I GDGCHC 2 cut(s) 97, 664
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
BspACI CCGC 7 cut(s) 155, 390, 740, 787, 1184, 1312, 1505
BspANI GGCC 9 cut(s) 30, 41, 179, 492, 518, 734, 894, 957, 1351
BspCNI CTCAG 6 cut(s) 202, 541, 767, 997, 1163, 1516
BspDI ATCGAT 1 cut(s) 1590
BspEI TCCGGA 1 cut(s) 606
BspLI GGNNCC 7 cut(s) 6, 96, 141, 761, 807, 1078, 1599
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 12, 1188
BspT107I GGYRCC 3 cut(s) 139, 1076, 1597
BspTNI GGTCTC 2 cut(s) 843, 1006
BsrBI CCGCTC 1 cut(s) 1314
BsrFI RCCGGY 3 cut(s) 627, 1484, 1612
BsrI ACTGG 3 cut(s) 143, 149, 809
BssAI RCCGGY 3 cut(s) 627, 1484, 1612
BssECI CCNNGG 5 cut(s) 8, 31, 718, 1494, 1553
BssMI GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
BssNI GRCGYC 1 cut(s) 1181
BssSI CACGAG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 6 cut(s) 181, 719, 1404, 1544, 1554, 1602
Bst4CI ACNGT 3 cut(s) 448, 881, 1495
Bst6I CTCTTC 2 cut(s) 776, 907
BstACI GRCGYC 1 cut(s) 1181
BstAPI GCANNNNNTGC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 9 cut(s) 186, 804, 855, 910, 951, 955, 1032, 1101, 1255
BstDSI CCRYGG 1 cut(s) 1494
BstEII GGTNACC 1 cut(s) 1557
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 112, 346, 562
BstH2I RGCGCY 2 cut(s) 215, 1031
BstHHI GCGC 2 cut(s) 214, 1030
BstKTI GATC 6 cut(s) 7, 291, 306, 377, 1096, 1196
BstMAI GTCTC 4 cut(s) 266, 843, 1006, 1525
BstMBI GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
BstMWI GCNNNNNNNGC 9 cut(s) 47, 56, 65, 74, 185, 641, 824, 925, 1511
BstNI CCWGG 6 cut(s) 181, 719, 1404, 1544, 1554, 1602
BstNSI RCATGY 1 cut(s) 912
BstPI GGTNACC 1 cut(s) 1557
BstSCI CCNGG 7 cut(s) 179, 717, 889, 1402, 1542, 1552, 1600
BstSFI CTRYAG 2 cut(s) 1227, 1260
BstSLI GKGCMC 1 cut(s) 664
BstV1I GCAGC 5 cut(s) 762, 811, 830, 833, 869
BstV2I GAAGAC 1 cut(s) 1673
BstX2I RGATCY 3 cut(s) 4, 374, 1193
BstXI CCANNNNNNTGG 2 cut(s) 770, 1403
BstYI RGATCY 3 cut(s) 4, 374, 1193
Bsu15I ATCGAT 1 cut(s) 1590
Bsu36I CCTNAGG 1 cut(s) 984
BsuRI GGCC 9 cut(s) 30, 41, 179, 492, 518, 734, 894, 957, 1351
BsuTUI ATCGAT 1 cut(s) 1590
BtgI CCRYGG 1 cut(s) 1494
BtrI CACGTC 1 cut(s) 1537
BtsCI GGATG 3 cut(s) 112, 346, 562
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 4 cut(s) 150, 453, 657, 1158
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 9 cut(s) 186, 804, 855, 910, 951, 955, 1032, 1101, 1255
CaiI CAGNNNCTG 2 cut(s) 493, 824
CfoI GCGC 2 cut(s) 214, 1030
Cfr10I RCCGGY 3 cut(s) 627, 1484, 1612
Cfr13I GGNCC 7 cut(s) 39, 463, 490, 517, 733, 760, 892
ClaI ATCGAT 1 cut(s) 1590
CseI GACGC 1 cut(s) 1189
CsiI ACCWGGT 1 cut(s) 1600
Csp6I GTAC 7 cut(s) 140, 231, 297, 1077, 1491, 1598, 1605
CspAI ACCGGT 3 cut(s) 627, 1484, 1612
CviAII CATG 4 cut(s) 286, 692, 909, 1450
CviQI GTAC 7 cut(s) 140, 231, 297, 1077, 1491, 1598, 1605
DpnI GATC 6 cut(s) 6, 290, 305, 376, 1095, 1195
DpnII GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
DraIII CACNNNGTG 1 cut(s) 1245
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 776, 907
EarI CTCTTC 2 cut(s) 776, 907
Eco24I GRGCYC 1 cut(s) 97
Eco31I GGTCTC 2 cut(s) 843, 1006
Eco47I GGWCC 2 cut(s) 463, 760
Eco57I CTGAAG 1 cut(s) 1637
Eco72I CACGTG 1 cut(s) 294
Eco81I CCTNAGG 1 cut(s) 984
Eco88I CYCGRG 2 cut(s) 378, 1685
Eco91I GGTNACC 1 cut(s) 1557
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 490, 733
EcoO65I GGTNACC 1 cut(s) 1557
EcoRII CCWGG 6 cut(s) 179, 717, 1402, 1542, 1552, 1600
EcoT22I ATGCAT 1 cut(s) 693
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 4 cut(s) 289, 695, 912, 1453
FaqI GGGAC 1 cut(s) 773
FatI CATG 4 cut(s) 285, 691, 908, 1449
FauI CCCGC 1 cut(s) 733
FbaI TGATCA 1 cut(s) 288
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 7 cut(s) 751, 788, 819, 822, 825, 858, 1184
FokI GGATG 3 cut(s) 119, 353, 569
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 7 cut(s) 751, 788, 819, 822, 825, 858, 1184
FspBI CTAG 7 cut(s) 24, 78, 546, 641, 737, 1146, 1191
GlaI GCGC 2 cut(s) 213, 1029
GluI GCNGC 7 cut(s) 751, 788, 819, 822, 825, 858, 1184
GsuI CTGGAG 2 cut(s) 792, 1011
HaeII RGCGCY 2 cut(s) 215, 1031
HaeIII GGCC 9 cut(s) 30, 41, 179, 492, 518, 734, 894, 957, 1351
HapII CCGG 5 cut(s) 607, 628, 890, 1485, 1613
HgaI GACGC 1 cut(s) 1189
HhaI GCGC 2 cut(s) 214, 1030
Hin1I GRCGYC 1 cut(s) 1181
Hin1II CATG 4 cut(s) 289, 695, 912, 1453
Hin6I GCGC 2 cut(s) 212, 1028
HinP1I GCGC 2 cut(s) 212, 1028
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 1414
HinfI GANTC 6 cut(s) 793, 1174, 1303, 1549, 1624, 1695
HpaII CCGG 5 cut(s) 607, 628, 890, 1485, 1613
HphI GGTGA 7 cut(s) 274, 628, 697, 896, 1168, 1203, 1602
Hpy166II GTNNAC 2 cut(s) 297, 565
Hpy188I TCNGA 3 cut(s) 1179, 1525, 1671
Hpy188III TCNNGA 9 cut(s) 307, 378, 380, 425, 440, 607, 1307, 1655, 1685
Hpy8I GTNNAC 2 cut(s) 297, 565
Hpy99I CGWCG 1 cut(s) 1183
HpyAV CCTTC 5 cut(s) 225, 718, 1067, 1147, 1451
HpyCH4III ACNGT 3 cut(s) 448, 881, 1495
HpyCH4IV ACGT 3 cut(s) 293, 326, 1536
HpyCH4V TGCA 8 cut(s) 487, 668, 691, 827, 912, 975, 1064, 1514
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 56, 65, 74, 185, 641, 824, 925, 1511
HpySE526I ACGT 3 cut(s) 293, 326, 1536
Hsp92I GRCGYC 1 cut(s) 1181
Hsp92II CATG 4 cut(s) 289, 695, 912, 1453
HspAI GCGC 2 cut(s) 212, 1028
Kpn2I TCCGGA 1 cut(s) 606
KpnI GGTACC 3 cut(s) 143, 1080, 1601
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
LmnI GCTCC 5 cut(s) 100, 209, 454, 609, 811
Lsp1109I GCAGC 5 cut(s) 762, 811, 830, 833, 869
LweI GCATC 3 cut(s) 303, 678, 1240
MabI ACCWGGT 1 cut(s) 1600
MaeI CTAG 7 cut(s) 24, 78, 546, 641, 737, 1146, 1191
MaeII ACGT 3 cut(s) 293, 326, 1536
MaeIII GTNAC 4 cut(s) 385, 616, 1532, 1557
MalI GATC 6 cut(s) 6, 290, 305, 376, 1095, 1195
MbiI CCGCTC 1 cut(s) 1314
MboI GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
MboII GAAGA 6 cut(s) 322, 323, 793, 894, 1200, 1673
MflI RGATCY 3 cut(s) 4, 374, 1193
MhlI GDGCHC 2 cut(s) 97, 664
MlsI TGGCCA 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 3 cut(s) 787, 1168, 1618
MmeI TCCRAC 4 cut(s) 114, 441, 1202, 1419
Mox20I TGGCCA 1 cut(s) 179
Mph1103I ATGCAT 1 cut(s) 693
MroI TCCGGA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 872
MscI TGGCCA 1 cut(s) 179
MslI CAYNNNNRTG 4 cut(s) 352, 768, 868, 1448
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 802, 824
MspI CCGG 5 cut(s) 607, 628, 890, 1485, 1613
MspR9I CCNGG 7 cut(s) 181, 719, 891, 1404, 1544, 1554, 1602
Mva1269I GAATGC 1 cut(s) 938
MvaI CCWGG 6 cut(s) 181, 719, 1404, 1544, 1554, 1602
MwoI GCNNNNNNNGC 9 cut(s) 47, 56, 65, 74, 185, 641, 824, 925, 1511
NciI CCSGG 1 cut(s) 891
NdeII GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
NlaIII CATG 4 cut(s) 289, 695, 912, 1453
NlaIV GGNNCC 7 cut(s) 6, 96, 141, 761, 807, 1078, 1599
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 385, 616, 1532
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 1 cut(s) 912
OliI CACNNNNGTG 1 cut(s) 768
PaeI GCATGC 1 cut(s) 912
PaeR7I CTCGAG 2 cut(s) 378, 1685
PaqCI CACCTGC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 911
PctI GAATGC 1 cut(s) 938
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 3 cut(s) 1303, 1549, 1695
PfoI TCCNGGA 2 cut(s) 1402, 1542
PinAI ACCGGT 3 cut(s) 627, 1484, 1612
PkrI GCNGC 7 cut(s) 752, 789, 820, 823, 826, 859, 1185
PleI GAGTC 3 cut(s) 787, 1168, 1618
PmaCI CACGTG 1 cut(s) 294
PmlI CACGTG 1 cut(s) 294
PpsI GAGTC 3 cut(s) 787, 1168, 1618
Ppu21I YACGTR 1 cut(s) 294
Psp6I CCWGG 6 cut(s) 179, 717, 1402, 1542, 1552, 1600
PspCI CACGTG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 1557
PspGI CCWGG 6 cut(s) 179, 717, 1402, 1542, 1552, 1600
PspN4I GGNNCC 7 cut(s) 6, 96, 141, 761, 807, 1078, 1599
PspPI GGNCC 7 cut(s) 39, 463, 490, 517, 733, 760, 892
PstNI CAGNNNCTG 2 cut(s) 493, 824
PsuI RGATCY 3 cut(s) 4, 374, 1193
PvuII CAGCTG 2 cut(s) 802, 824
RsaI GTAC 7 cut(s) 141, 232, 298, 1078, 1492, 1599, 1606
RsaNI GTAC 7 cut(s) 140, 231, 297, 1077, 1491, 1598, 1605
RseI CAYNNNNRTG 4 cut(s) 352, 768, 868, 1448
SalI GTCGAC 1 cut(s) 563
SatI GCNGC 7 cut(s) 751, 788, 819, 822, 825, 858, 1184
Sau3AI GATC 6 cut(s) 4, 288, 303, 374, 1093, 1193
Sau96I GGNCC 7 cut(s) 39, 463, 490, 517, 733, 760, 892
SchI GAGTC 3 cut(s) 787, 1168, 1618
ScrFI CCNGG 7 cut(s) 181, 719, 891, 1404, 1544, 1554, 1602
SduI GDGCHC 2 cut(s) 97, 664
SexAI ACCWGGT 1 cut(s) 1600
SfaNI GCATC 3 cut(s) 303, 678, 1240
SfcI CTRYAG 2 cut(s) 1227, 1260
Sfr274I CTCGAG 2 cut(s) 378, 1685
SinI GGWCC 2 cut(s) 463, 760
SlaI CTCGAG 2 cut(s) 378, 1685
SmiMI CAYNNNNRTG 4 cut(s) 352, 768, 868, 1448
SmlI CTYRAG 4 cut(s) 335, 378, 467, 1685
SmoI CTYRAG 4 cut(s) 335, 378, 467, 1685
SphI GCATGC 1 cut(s) 912
SsiI CCGC 7 cut(s) 155, 390, 740, 787, 1184, 1312, 1505
SspMI CTAG 7 cut(s) 24, 78, 546, 641, 737, 1146, 1191
StyD4I CCNGG 7 cut(s) 179, 717, 889, 1402, 1542, 1552, 1600
TaaI ACNGT 3 cut(s) 448, 881, 1495
TaiI ACGT 3 cut(s) 296, 329, 1539
TaqI TCGA 5 cut(s) 306, 379, 564, 1590, 1686
TauI GCSGC 2 cut(s) 790, 1186
TfiI GAWTC 3 cut(s) 1303, 1549, 1695
TscAI CASTG 4 cut(s) 150, 453, 657, 1158
TseFI GTSAC 3 cut(s) 385, 616, 1532
TseI GCWGC 5 cut(s) 750, 818, 821, 824, 857
Tsp45I GTSAC 3 cut(s) 385, 616, 1532
TspDTI ATGAA 5 cut(s) 463, 571, 573, 1129, 1687
TspGWI ACGGA 2 cut(s) 314, 589
TspRI CASTG 4 cut(s) 150, 453, 657, 1158
VpaK11BI GGWCC 2 cut(s) 463, 760
XagI CCTNNNNNAGG 1 cut(s) 12
XceI RCATGY 1 cut(s) 912
XhoI CTCGAG 2 cut(s) 378, 1685
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 7 cut(s) 24, 78, 546, 641, 737, 1146, 1191
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.