Rw1G012770

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000094
Physical Location & Seq
Forward (+)
28451511 .. 28452143
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012770.1

Sequence Viewer

Length: 633 bp
ATGGCACCATATGAGGCCCTCTATGGTAGGCCATGTAGATCTCCGATCTGTTGGGCAGAGGCAGGAGACAAGGTGTTATTGGGTCCTGAGATTGTCCAGGAGACCACTGACAAGATTTCAATTATCAGGGACAGGATTCGAACAGCACAGAGTAGACAGAAGAGTTATGCAGATTTGAGAAGGAGACATGTTGAGTTTAAAGAGGGTGATCATGTGTTCTTGAAGGTCTCGCCCATGAAGGGTGTGGTGAGATTTGGCAAGAAAGGAAAGTTATCACCAAGGTTTGTCGGACCTTTTGAAATTCTGGAAAGGGTAGGAGATTTGGCTTATAGGCTTGCCTTACCTCCTACTATGTCTGGTGTACATAATGTTTTCCATGTGTCTATGTTGAGGAAGTATGTTCAGGATGAGTCACATGTGATTGATTATGGTACGATTGAAGTGCACGCGGATACGACCTTTGTTGTTGAACCTGTTCGAATTTTGGATAGGTCAACAAAGCAACTTCGAAGGAAGGAAGTTGACTTGGTCAAGATATTGTGGAGTCACCATGACGAGGGTGATGCTTCTTGGGAATTGGAGTCGGATGTGAGAGCGAAGTACCCACAGTTGTTTGTTGATGAGCAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.19

Weight (kDa)

8.47

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 69 - 134 2.8e-29 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 449
AciI CCGC 1 cut(s) 449
AcsI RAATTY 2 cut(s) 300, 480
AfaI GTAC 3 cut(s) 363, 433, 602
AfiI CCNNNNNNNGG 2 cut(s) 239, 556
AflIII ACRYGT 2 cut(s) 187, 415
AgsI TTSAA 5 cut(s) 120, 223, 299, 440, 470
AjnI CCWGG 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 4 cut(s) 60, 95, 178, 232
Alw44I GTGCAC 1 cut(s) 443
AoxI GGCC 2 cut(s) 15, 29
ApaLI GTGCAC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 300, 480
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 3 cut(s) 16, 83, 290
AsuHPI GGTGA 5 cut(s) 218, 259, 267, 539, 572
AsuII TTCGAA 3 cut(s) 139, 478, 508
AvaII GGWCC 2 cut(s) 83, 290
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 447
BcgI CGANNNNNNTGC 4 cut(s) 424, 458, 545, 579
BciT130I CCWGG 1 cut(s) 98
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 4 cut(s) 60, 95, 178, 232
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 83, 290
BmgT120I GGNCC 3 cut(s) 16, 83, 290
BmiI GGNNCC 2 cut(s) 6, 84
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 553
Bpu14I TTCGAA 3 cut(s) 139, 478, 508
BsaI GGTCTC 2 cut(s) 95, 232
BsaJI CCNNGG 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 556
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 412, 592
BseLI CCNNNNNNNGG 2 cut(s) 239, 556
BseMII CTCAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 17, 31
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 447
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 239, 556
BsmAI GTCTC 4 cut(s) 60, 95, 178, 232
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 17, 31
Bso31I GGTCTC 2 cut(s) 95, 232
Bsp119I TTCGAA 3 cut(s) 139, 478, 508
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 38, 45, 208
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 17, 31
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 6, 84
BspT104I TTCGAA 3 cut(s) 139, 478, 508
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 2 cut(s) 95, 232
BsrGI TGTACA 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 3 cut(s) 38, 45, 208
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 361
BstBI TTCGAA 3 cut(s) 139, 478, 508
BstC8I GCNNGC 3 cut(s) 336, 447, 627
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 412, 592
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 3 cut(s) 41, 48, 211
BstMAI GTCTC 4 cut(s) 60, 95, 178, 232
BstMBI GATC 3 cut(s) 38, 45, 208
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 2 cut(s) 191, 419
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 17, 31
BtsCI GGATG 2 cut(s) 412, 592
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 336, 447, 627
Cfr13I GGNCC 3 cut(s) 16, 83, 290
Csp6I GTAC 3 cut(s) 362, 432, 601
CviAII CATG 7 cut(s) 33, 188, 212, 235, 377, 416, 551
CviJI RGCY 4 cut(s) 17, 31, 326, 334
CviKI_1 RGCY 4 cut(s) 17, 31, 326, 334
CviQI GTAC 3 cut(s) 362, 432, 601
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 40, 47, 210
DpnII GATC 3 cut(s) 38, 45, 208
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 278
Eco31I GGTCTC 2 cut(s) 95, 232
Eco47I GGWCC 2 cut(s) 83, 290
EcoO109I RGGNCCY 2 cut(s) 16, 83
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 7 cut(s) 36, 191, 215, 238, 380, 419, 554
FaqI GGGAC 1 cut(s) 143
FatI CATG 7 cut(s) 32, 187, 211, 234, 376, 415, 550
FauNDI CATATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 154
FokI GGATG 2 cut(s) 419, 599
HaeIII GGCC 2 cut(s) 17, 31
Hin1II CATG 7 cut(s) 36, 191, 215, 238, 380, 419, 554
HincII GTYRAC 2 cut(s) 495, 523
HindII GTYRAC 2 cut(s) 495, 523
HinfI GANTC 4 cut(s) 136, 410, 544, 581
HphI GGTGA 5 cut(s) 218, 259, 267, 539, 572
Hpy166II GTNNAC 5 cut(s) 155, 362, 445, 495, 523
Hpy188I TCNGA 3 cut(s) 45, 290, 586
Hpy188III TCNNGA 5 cut(s) 86, 220, 305, 404, 532
Hpy8I GTNNAC 5 cut(s) 155, 362, 445, 495, 523
HpyAV CCTTC 5 cut(s) 174, 217, 232, 504, 508
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 170, 445
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 7 cut(s) 36, 191, 215, 238, 380, 419, 554
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 38, 45, 208
LweI GCATC 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 411, 545
MalI GATC 3 cut(s) 40, 47, 210
MboI GATC 3 cut(s) 38, 45, 208
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 120, 300, 480, 575
MlyI GAGTC 3 cut(s) 419, 553, 590
MmeI TCCRAC 2 cut(s) 268, 564
MnlI CCTC 7 cut(s) 7, 29, 52, 196, 354, 384, 550
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 449
NdeI CATATG 1 cut(s) 10
NdeII GATC 3 cut(s) 38, 45, 208
NlaIII CATG 7 cut(s) 36, 191, 215, 238, 380, 419, 554
NlaIV GGNNCC 2 cut(s) 6, 84
NmuCI GTSAC 2 cut(s) 411, 545
NspI RCATGY 2 cut(s) 191, 419
NspV TTCGAA 3 cut(s) 139, 478, 508
PciI ACATGT 2 cut(s) 187, 415
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 136
PflFI GACNNNGTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 96
PleI GAGTC 3 cut(s) 418, 552, 589
PpsI GAGTC 3 cut(s) 418, 552, 589
PpuMI RGGWCCY 1 cut(s) 83
PscI ACATGT 2 cut(s) 187, 415
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 6, 84
PspPI GGNCC 3 cut(s) 16, 83, 290
PspPPI RGGWCCY 1 cut(s) 83
PsuI RGATCY 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 3 cut(s) 363, 433, 602
RsaNI GTAC 3 cut(s) 362, 432, 601
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 3 cut(s) 38, 45, 208
Sau96I GGNCC 3 cut(s) 16, 83, 290
SchI GAGTC 3 cut(s) 419, 553, 590
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 447
SetI ASST 8 cut(s) 75, 228, 284, 295, 346, 461, 475, 494
SfaNI GCATC 1 cut(s) 553
SfuI TTCGAA 3 cut(s) 139, 478, 508
SinI GGWCC 2 cut(s) 83, 290
Sse9I AATT 4 cut(s) 120, 300, 480, 575
SsiI CCGC 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 139, 478, 508
TasI AATT 4 cut(s) 120, 300, 480, 575
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 411, 545
Tsp45I GTSAC 2 cut(s) 411, 545
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 527
VneI GTGCAC 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 83, 290
XapI RAATTY 2 cut(s) 300, 480
XceI RCATGY 2 cut(s) 191, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.