Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Reverse (-)

56001293 .. 56002732

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGAAAGGGAATTCTTCTCGTTAGTCCAAGGGACTAAGAGTGTGAGGGAGTATGAAGCTAAGTTCTCAAGGTTGTATCGCTTTGTGAGGCAGATGGATGCCGAGAGCTTAACGGTGGAACTCATTTTCGTTAAGGCTATGGCCATTGAGCAGGAGAACTTGACTTTCCAGGAACATGAATCGGCTGAGAGGGATTTCCAAAGAAAGGGAAAGGCAACTGCGGGGAGCAGTAAAGCATTTGGGAATCGAGGTGGGTTCTGGAAGAGACAGAGGACTAATCAGCAGGCGCCAGCTAGGGCTGCAGCTGCACCTGCTAGGATTGCACCTAATAGGCCGGTGGTGATCCCGAAGTGTTTCAATTGCAATGAGATGGGCCATGTTGCTCGAGCTTGCACGAAACCTAAGAACTTGGCATGCTTCACATGTGGCCACTTCTCAAAGGATTGTACCCAGCAGGGTAGGGGACAAGGGAACCAGCAGAGGCATCTACCTCAGGGAAATGCTAAGGTGTTTGCTATTGGTCAGCAGAATGCCGGAGTGGAAGGTACCTTATCCTTATTTGATTTCTTTGCTAAGGTGTTATTTGATACAGGAGCGTCCCACTCTTTCATATCTAGTTCTGTGGTTGATATGTTAGGTTTGACTCCTAGGCCTCTTGCTAGACCCTTGTGTGTTATTTCCCCACTTGGTGTTTCTCTTGAGCTTCATAGGTTTTGTGATGCATGTCCAATTGTGATTGGTGGTAAGGAGTTTACCACGACCTTGATTGTGTTAGCAGATCATAAGTATGATGTCATTTTGGGTATTGATTGGTTGAGGCCAAATCATGCTATGATTGATTGCTTTGAAATGGTAGTGTCATTTCATATACCTGGGCAGCCGGTGTTTCGTTATCGGTGTCTTAGGTCAGATACTGCTTTAAGGGAAGGATTCTTAGCTCATGTGGAGTCAGTGAGTAGTGCTGCGGTTATGGCAGAGATTTTTGTGGTTTCCGAGTACAGTGATGTATTTCAGGATATACCAGGGTTACCTCCAAGGAGGGTAGTGGATTTTGCTATCGATGTGATACCAGGTACTGCACCTGTATCCATGGCACCTTTTCAGATGGCACCAACTGAACTTAAAGAGTTGAAGGAGCAAATTGATGGTTTACTTGAACAAGGGTTCATTAGACCTAGTACTTCTCCTTGGGGTGCACCTGTGGTGTTTGCGAAGAAGAAGGATGGTTCACTAAGGTTGTGTGTGGATTATCGGCAGTTGAACAAGGTGACGATTAAGAATAGGTACCCTTTACCTAGGATTGATGACTTGTTTGACCAGCTTAAGGAAGCTACTATATTCTCGAAGATCGATTTGAGATCTGGATATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

457

Amino Acids

51.01

Weight (kDa)

8.84

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	117 - 133	3.2e-06	Zinc knuckle
RVP_2	PF08284	177 - 288	1.4e-30	Retroviral aspartyl protease
gag-asp_proteas	PF13975	192 - 273	1.2e-06	gag-polyprotein putative aspartyl protease
RVT_1	PF00078	405 - 457	5.6e-07	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
Acc65I	GGTACC	2 cut(s)	545, 1284
AccB1I	GGYRCC	5 cut(s)	286, 545, 1093, 1108, 1284
AciI	CCGC	2 cut(s)	221, 965
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	141, 427
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	6 cut(s)	448, 547, 998, 1075, 1180, 1286
AfiI	CCNNNNNNNGG	2 cut(s)	205, 1324
AflII	CTTAAG	1 cut(s)	1322
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	5 cut(s)	358, 848, 1132, 1157, 1261
AjnI	CCWGG	4 cut(s)	168, 871, 1021, 1069
AluBI	AGCT	9 cut(s)	59, 108, 293, 305, 389, 703, 938, 1321, 1331
AluI	AGCT	9 cut(s)	59, 108, 293, 305, 389, 703, 938, 1321, 1331
Alw21I	GWGCWC	1 cut(s)	1198
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	1194
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	2 cut(s)	914, 1076
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	6 cut(s)	141, 332, 373, 427, 650, 818
ApaLI	GTGCAC	1 cut(s)	1194
ApeKI	GCWGC	5 cut(s)	299, 302, 305, 877, 962
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	2 cut(s)	545, 1284
AspA2I	CCTAGG	2 cut(s)	647, 1295
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	352, 1279
AvaI	CYCGRG	1 cut(s)	384
AvrII	CCTAGG	2 cut(s)	647, 1295
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	1198
BalI	TGGCCA	2 cut(s)	143, 429
BanI	GGYRCC	5 cut(s)	286, 545, 1093, 1108, 1284
Bbv12I	GWGCWC	1 cut(s)	1198
BbvI	GCAGC	5 cut(s)	286, 292, 314, 889, 949
BccI	CCATC	5 cut(s)	88, 364, 1099, 1139, 1217
BciT130I	CCWGG	4 cut(s)	170, 873, 1023, 1071
BciVI	GTATCC	1 cut(s)	1096
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	8 cut(s)	294, 315, 615, 648, 660, 1176, 1296, 1372
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	1322
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	1358
BisI	GCNGC	5 cut(s)	300, 303, 306, 878, 963
BlnI	CCTAGG	2 cut(s)	647, 1295
BlsI	GCNGC	5 cut(s)	301, 304, 307, 879, 964
BmcAI	AGTACT	1 cut(s)	1180
Bme1390I	CCNGG	4 cut(s)	170, 873, 1023, 1071
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	6 cut(s)	288, 473, 547, 1095, 1110, 1286
BmrFI	CCNGG	4 cut(s)	170, 873, 1023, 1071
BmsI	GCATC	3 cut(s)	88, 493, 709
Bpu10I	CCTNAGC	2 cut(s)	504, 573
BpuEI	CTTGAG	2 cut(s)	52, 719
Bsa29I	ATCGAT	2 cut(s)	1059, 1350
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	8 cut(s)	28, 647, 872, 1022, 1034, 1089, 1187, 1295
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 1324
Bse118I	RCCGGY	2 cut(s)	334, 880
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	4 cut(s)	170, 873, 1023, 1071
BseCI	ATCGAT	2 cut(s)	1059, 1350
BseDI	CCNNGG	8 cut(s)	28, 647, 872, 1022, 1034, 1089, 1187, 1295
BseGI	GGATG	2 cut(s)	103, 1228
BseLI	CCNNNNNNNGG	2 cut(s)	205, 1324
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	177, 506
BseSI	GKGCMC	1 cut(s)	1198
BseXI	GCAGC	5 cut(s)	286, 292, 314, 889, 949
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	2 cut(s)	291, 1062
BshFI	GGCC	6 cut(s)	143, 334, 375, 429, 652, 820
BshNI	GGYRCC	5 cut(s)	286, 545, 1093, 1108, 1284
BshVI	ATCGAT	2 cut(s)	1059, 1350
BsiHKAI	GWGCWC	1 cut(s)	1198
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	335, 534, 881
BslFI	GGGAC	3 cut(s)	46, 477, 583
BslI	CCNNNNNNNGG	2 cut(s)	205, 1324
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	46, 477, 583
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	6 cut(s)	143, 334, 375, 429, 652, 820
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	1198
Bsp143I	GATC	4 cut(s)	342, 778, 1347, 1358
Bsp19I	CCATGG	1 cut(s)	1089
BspACI	CCGC	2 cut(s)	221, 965
BspANI	GGCC	6 cut(s)	143, 334, 375, 429, 652, 820
BspCNI	CTCAG	2 cut(s)	178, 505
BspDI	ATCGAT	2 cut(s)	1059, 1350
BspLI	GGNNCC	6 cut(s)	288, 473, 547, 1095, 1110, 1286
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	5 cut(s)	286, 545, 1093, 1108, 1284
BspTI	CTTAAG	1 cut(s)	1322
BsrDI	GCAATG	1 cut(s)	370
BsrFI	RCCGGY	2 cut(s)	334, 880
BssAI	RCCGGY	2 cut(s)	334, 880
BssECI	CCNNGG	8 cut(s)	28, 647, 872, 1022, 1034, 1089, 1187, 1295
BssMI	GATC	4 cut(s)	342, 778, 1347, 1358
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	6 cut(s)	28, 647, 1034, 1089, 1187, 1295
Bst2UI	CCWGG	4 cut(s)	170, 873, 1023, 1071
Bst4CI	ACNGT	2 cut(s)	115, 1001
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	1322
BstC8I	GCNNGC	4 cut(s)	285, 291, 391, 415
BstDSI	CCRYGG	1 cut(s)	1089
BstEII	GGTNACC	1 cut(s)	1026
BstF5I	GGATG	2 cut(s)	103, 1228
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	4 cut(s)	345, 781, 1350, 1361
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	4 cut(s)	342, 778, 1347, 1358
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 305, 311, 320, 971
BstNI	CCWGG	4 cut(s)	170, 873, 1023, 1071
BstNSI	RCATGY	3 cut(s)	417, 426, 726
BstPI	GGTNACC	1 cut(s)	1026
BstSCI	CCNGG	4 cut(s)	168, 871, 1021, 1069
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	1198
BstV1I	GCAGC	5 cut(s)	286, 292, 314, 889, 949
BstX2I	RGATCY	1 cut(s)	1358
BstYI	RGATCY	1 cut(s)	1358
Bsu15I	ATCGAT	2 cut(s)	1059, 1350
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	6 cut(s)	143, 334, 375, 429, 652, 820
BsuTUI	ATCGAT	2 cut(s)	1059, 1350
BtgI	CCRYGG	1 cut(s)	1089
BtsCI	GGATG	2 cut(s)	103, 1228
BtsIMutI	CAGTG	2 cut(s)	957, 1006
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	4 cut(s)	285, 291, 391, 415
CaiI	CAGNNNCTG	2 cut(s)	914, 1076
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	2 cut(s)	334, 880
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	2 cut(s)	1059, 1350
CseI	GACGC	1 cut(s)	585
CsiI	ACCWGGT	1 cut(s)	1069
Csp6I	GTAC	6 cut(s)	447, 546, 997, 1074, 1179, 1285
CviAII	CATG	8 cut(s)	176, 377, 414, 423, 723, 827, 941, 1090
CviQI	GTAC	6 cut(s)	447, 546, 997, 1074, 1179, 1285
DinI	GGCGCC	1 cut(s)	288
DpnI	GATC	4 cut(s)	344, 780, 1349, 1360
DpnII	GATC	4 cut(s)	342, 778, 1347, 1358
DraIII	CACNNNGTG	1 cut(s)	689
EaeI	YGGCCR	2 cut(s)	141, 427
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	6 cut(s)	28, 647, 1034, 1089, 1187, 1295
Eco147I	AGGCCT	1 cut(s)	652
Eco32I	GATATC	1 cut(s)	1367
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	1026
EcoO65I	GGTNACC	1 cut(s)	1026
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	4 cut(s)	168, 871, 1021, 1069
EcoRV	GATATC	1 cut(s)	1367
EcoT14I	CCWWGG	6 cut(s)	28, 647, 1034, 1089, 1187, 1295
EcoT22I	ATGCAT	1 cut(s)	724
EgeI	GGCGCC	1 cut(s)	288
EheI	GGCGCC	1 cut(s)	288
ErhI	CCWWGG	6 cut(s)	28, 647, 1034, 1089, 1187, 1295
FaeI	CATG	8 cut(s)	179, 380, 417, 426, 726, 830, 944, 1093
FaqI	GGGAC	3 cut(s)	46, 477, 583
FatI	CATG	8 cut(s)	175, 376, 413, 422, 722, 826, 940, 1089
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	300, 303, 306, 878, 963
FokI	GGATG	2 cut(s)	110, 1235
Fsp4HI	GCNGC	5 cut(s)	300, 303, 306, 878, 963
FspBI	CTAG	8 cut(s)	294, 315, 615, 648, 660, 1176, 1296, 1372
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	5 cut(s)	300, 303, 306, 878, 963
GsaI	CCCAGC	1 cut(s)	454
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	6 cut(s)	143, 334, 375, 429, 652, 820
HapII	CCGG	3 cut(s)	335, 534, 881
HgaI	GACGC	1 cut(s)	585
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	8 cut(s)	179, 380, 417, 426, 726, 830, 944, 1093
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	5 cut(s)	179, 244, 643, 930, 947
HpaII	CCGG	3 cut(s)	335, 534, 881
HphI	GGTGA	2 cut(s)	352, 1279
Hpy166II	GTNNAC	4 cut(s)	753, 1151, 1196, 1229
Hpy188I	TCNGA	3 cut(s)	910, 994, 1104
Hpy188III	TCNNGA	6 cut(s)	259, 346, 698, 1013, 1342, 1362
Hpy8I	GTNNAC	4 cut(s)	753, 1151, 1196, 1229
HpyAV	CCTTC	4 cut(s)	536, 920, 1126, 1213
HpyCH4III	ACNGT	2 cut(s)	115, 1001
HpyCH4V	TGCA	8 cut(s)	302, 308, 323, 363, 393, 722, 1079, 1196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 305, 311, 320, 971
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	8 cut(s)	179, 380, 417, 426, 726, 830, 944, 1093
HspAI	GCGC	1 cut(s)	287
KasI	GGCGCC	1 cut(s)	286
KpnI	GGTACC	2 cut(s)	549, 1288
Kzo9I	GATC	4 cut(s)	342, 778, 1347, 1358
LmnI	GCTCC	3 cut(s)	225, 593, 1135
Lsp1109I	GCAGC	5 cut(s)	286, 292, 314, 889, 949
LweI	GCATC	3 cut(s)	88, 493, 709
MabI	ACCWGGT	1 cut(s)	1069
MaeI	CTAG	8 cut(s)	294, 315, 615, 648, 660, 1176, 1296, 1372
MaeIII	GTNAC	2 cut(s)	1026, 1267
MalI	GATC	4 cut(s)	344, 780, 1349, 1360
MboI	GATC	4 cut(s)	342, 778, 1347, 1358
MboII	GAAGA	5 cut(s)	7, 274, 1225, 1228, 1357
MfeI	CAATTG	2 cut(s)	358, 729
MflI	RGATCY	1 cut(s)	1358
MhlI	GDGCHC	1 cut(s)	1198
MlsI	TGGCCA	2 cut(s)	143, 429
MluCI	AATT	4 cut(s)	11, 358, 729, 1140
MluNI	TGGCCA	2 cut(s)	143, 429
Mly113I	GGCGCC	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	637, 956
Mox20I	TGGCCA	2 cut(s)	143, 429
Mph1103I	ATGCAT	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	2 cut(s)	143, 429
MseI	TTAA	6 cut(s)	110, 132, 920, 1122, 1275, 1323
MslI	CAYNNNNRTG	1 cut(s)	786
Msp20I	TGGCCA	2 cut(s)	143, 429
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	1322
MspI	CCGG	3 cut(s)	335, 534, 881
MspR9I	CCNGG	4 cut(s)	170, 873, 1023, 1071
MunI	CAATTG	2 cut(s)	358, 729
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	4 cut(s)	170, 873, 1023, 1071
MwoI	GCNNNNNNNGC	5 cut(s)	299, 305, 311, 320, 971
NarI	GGCGCC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	1089
NdeII	GATC	4 cut(s)	342, 778, 1347, 1358
NlaIII	CATG	8 cut(s)	179, 380, 417, 426, 726, 830, 944, 1093
NlaIV	GGNNCC	6 cut(s)	288, 473, 547, 1095, 1110, 1286
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	1267
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	3 cut(s)	417, 426, 726
PaeI	GCATGC	1 cut(s)	417
PaeR7I	CTCGAG	1 cut(s)	384
PaqCI	CACCTGC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	652
PciI	ACATGT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	179, 244, 930
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	301, 304, 307, 879, 964
PleI	GAGTC	2 cut(s)	637, 955
PluTI	GGCGCC	1 cut(s)	290
PpsI	GAGTC	2 cut(s)	637, 955
PscI	ACATGT	1 cut(s)	422
Psp6I	CCWGG	4 cut(s)	168, 871, 1021, 1069
PspEI	GGTNACC	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	450
PspGI	CCWGG	4 cut(s)	168, 871, 1021, 1069
PspN4I	GGNNCC	6 cut(s)	288, 473, 547, 1095, 1110, 1286
PspPI	GGNCC	1 cut(s)	373
PspXI	VCTCGAGB	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	2 cut(s)	914, 1076
PsuI	RGATCY	1 cut(s)	1358
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	6 cut(s)	448, 547, 998, 1075, 1180, 1286
RsaNI	GTAC	6 cut(s)	447, 546, 997, 1074, 1179, 1285
RseI	CAYNNNNRTG	1 cut(s)	786
SaqAI	TTAA	6 cut(s)	110, 132, 920, 1122, 1275, 1323
SatI	GCNGC	5 cut(s)	300, 303, 306, 878, 963
Sau3AI	GATC	4 cut(s)	342, 778, 1347, 1358
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	1180
SchI	GAGTC	2 cut(s)	637, 956
ScrFI	CCNGG	4 cut(s)	170, 873, 1023, 1071
SduI	GDGCHC	1 cut(s)	1198
SexAI	ACCWGGT	1 cut(s)	1069
SfaNI	GCATC	3 cut(s)	88, 493, 709
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	4 cut(s)	67, 384, 698, 1322
SmoI	CTYRAG	4 cut(s)	67, 384, 698, 1322
SphI	GCATGC	1 cut(s)	417
Sse9I	AATT	4 cut(s)	11, 358, 729, 1140
SseBI	AGGCCT	1 cut(s)	652
SsiI	CCGC	2 cut(s)	221, 965
SspDI	GGCGCC	1 cut(s)	286
SspMI	CTAG	8 cut(s)	294, 315, 615, 648, 660, 1176, 1296, 1372
StuI	AGGCCT	1 cut(s)	652
StyD4I	CCNGG	4 cut(s)	168, 871, 1021, 1069
StyI	CCWWGG	6 cut(s)	28, 647, 1034, 1089, 1187, 1295
TaaI	ACNGT	2 cut(s)	115, 1001
TaqI	TCGA	5 cut(s)	247, 385, 1059, 1343, 1350
TasI	AATT	4 cut(s)	11, 358, 729, 1140
TatI	WGTACW	2 cut(s)	996, 1178
TfiI	GAWTC	3 cut(s)	179, 244, 930
Tru1I	TTAA	6 cut(s)	110, 132, 920, 1122, 1275, 1323
Tru9I	TTAA	6 cut(s)	110, 132, 920, 1122, 1275, 1323
TscAI	CASTG	2 cut(s)	957, 1006
TseFI	GTSAC	1 cut(s)	1267
TseI	GCWGC	5 cut(s)	299, 302, 305, 877, 962
Tsp45I	GTSAC	1 cut(s)	1267
TspDTI	ATGAA	6 cut(s)	69, 192, 598, 695, 854, 1156
TspRI	CASTG	2 cut(s)	957, 1006
Vha464I	CTTAAG	1 cut(s)	1322
VneI	GTGCAC	1 cut(s)	1194
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	3 cut(s)	417, 426, 726
XhoI	CTCGAG	1 cut(s)	384
XmaJI	CCTAGG	2 cut(s)	647, 1295
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	8 cut(s)	294, 315, 615, 648, 660, 1176, 1296, 1372
ZrmI	AGTACT	1 cut(s)	1180
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.