FvH4_3g18964

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Reverse (-)
12208200 .. 12210212
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18964.t1

Sequence Viewer

Length: 2013 bp
ATGACCACTCCCACCCCTACTCAGCCAGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTTAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAAATGTCATCATTGGTACGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTTTTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACATTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTAGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATATGGTGGATACAAGTATGAGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAATATGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGGTTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCATTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTTGTGATCGTATTCATAGATGACATATTGGTTTACTCAAAAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTTTTAGGTCATGTGATTTCGGTAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAGTTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGTTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAAGAAGGGGGTTAAGTTTGAATGGTCAGATCAATGTGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGATTTTTGATGCAACATGATCGAGTTATTGCCTACGCATCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTGTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGGTGGATGGAGTTAATCAATGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

671

Amino Acids

75.34

Weight (kDa)

8.68

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 43 - 173 6.7e-33 Retroviral aspartyl protease
RVT_1 PF00078 304 - 464 1e-35 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 527 - 621 8.4e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 553 - 651 1.6e-31 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 1484
AccB1I GGYRCC 4 cut(s) 62, 793, 926, 1028
AccB7I CCANNNNNTGG 1 cut(s) 1426
AccII CGCG 2 cut(s) 135, 1175
AccIII TCCGGA 2 cut(s) 697, 1651
AciI CCGC 9 cut(s) 100, 582, 815, 1078, 1173, 1175, 1306, 1763, 1805
AclWI GGATC 7 cut(s) 230, 1007, 1075, 1088, 1194, 1409, 1422
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 2 cut(s) 121, 794
AfaI GTAC 2 cut(s) 172, 196
AfiI CCNNNNNNNGG 5 cut(s) 163, 1090, 1426, 1563, 1769
AgsI TTSAA 9 cut(s) 497, 823, 832, 961, 1527, 1577, 1607, 1615, 1759
AjiI CACGTC 1 cut(s) 1697
AjnI CCWGG 4 cut(s) 66, 307, 721, 1975
AleI CACNNNNGTG 2 cut(s) 1460, 1878
AluBI AGCT 8 cut(s) 44, 479, 590, 632, 1798, 1909, 1985, 1997
AluI AGCT 8 cut(s) 44, 479, 590, 632, 1798, 1909, 1985, 1997
Alw21I GWGCWC 2 cut(s) 898, 1636
Alw26I GTCTC 6 cut(s) 306, 330, 888, 928, 1825, 1912
AlwI GGATC 7 cut(s) 230, 1007, 1075, 1088, 1194, 1409, 1422
Aor13HI TCCGGA 2 cut(s) 697, 1651
AoxI GGCC 1 cut(s) 872
ApeKI GCWGC 3 cut(s) 590, 1535, 1802
AseI ATTAAT 1 cut(s) 203
Asp700I GAANNNNTTC 2 cut(s) 675, 765
AspLEI GCGC 2 cut(s) 137, 796
AsuC2I CCSGG 2 cut(s) 240, 771
AsuHPI GGTGA 3 cut(s) 350, 355, 1156
AsuII TTCGAA 1 cut(s) 514
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 67
BamHI GGATCC 2 cut(s) 1080, 1414
BanI GGYRCC 4 cut(s) 62, 793, 926, 1028
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbsI GAAGAC 3 cut(s) 30, 839, 1456
Bbv12I GWGCWC 2 cut(s) 898, 1636
BbvI GCAGC 3 cut(s) 577, 1522, 1814
BccI CCATC 3 cut(s) 301, 518, 1927
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 1709, 1743
BciT130I CCWGG 4 cut(s) 68, 309, 723, 1977
BciVI GTATCC 1 cut(s) 637
BclI TGATCA 1 cut(s) 1015
BcnI CCSGG 2 cut(s) 240, 771
BcoDI GTCTC 6 cut(s) 306, 330, 888, 928, 1825, 1912
BfaI CTAG 8 cut(s) 54, 138, 264, 876, 1361, 1692, 1703, 1749
BfmI CTRYAG 3 cut(s) 585, 681, 756
BfoI RGCGCY 1 cut(s) 797
BfuAI ACCTGC 1 cut(s) 1484
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 5 cut(s) 591, 1176, 1536, 1763, 1803
BlsI GCNGC 5 cut(s) 592, 1177, 1537, 1764, 1804
Bme1390I CCNGG 6 cut(s) 68, 240, 309, 723, 771, 1977
BmgBI CACGTC 1 cut(s) 1697
BmiI GGNNCC 9 cut(s) 64, 244, 795, 810, 928, 1030, 1082, 1416, 1849
BmrFI CCNGG 6 cut(s) 68, 240, 309, 723, 771, 1977
BmsI GCATC 6 cut(s) 1137, 1297, 1675, 1707, 1754, 1990
BpiI GAAGAC 3 cut(s) 30, 839, 1456
BpmI CTGGAG 3 cut(s) 66, 795, 1814
Bpu14I TTCGAA 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 1805
BpuMI CCSGG 2 cut(s) 240, 771
Bsa29I ATCGAT 1 cut(s) 1002
BsaHI GRCGYC 2 cut(s) 121, 794
BsaJI CCNNGG 6 cut(s) 66, 67, 544, 887, 995, 1173
BsaWI WCCGGW 4 cut(s) 335, 697, 898, 1651
BsaXI ACNNNNNCTCC 6 cut(s) 1395, 1425, 1618, 1648, 1656, 1686
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 1090, 1426, 1563, 1769
Bse1I ACTGG 1 cut(s) 26
Bse21I CCTNAGG 1 cut(s) 711
BseAI TCCGGA 2 cut(s) 697, 1651
BseBI CCWGG 4 cut(s) 68, 309, 723, 1977
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 6 cut(s) 66, 67, 544, 887, 995, 1173
BseGI GGATG 4 cut(s) 706, 1660, 1938, 1972
BseLI CCNNNNNNNGG 5 cut(s) 163, 1090, 1426, 1563, 1769
BseMII CTCAG 4 cut(s) 35, 110, 702, 803
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 728, 1530
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 3 cut(s) 577, 1522, 1814
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 135, 1175
BshFI GGCC 1 cut(s) 874
BshNI GGYRCC 4 cut(s) 62, 793, 926, 1028
BshVI ATCGAT 1 cut(s) 1002
BsiHKAI GWGCWC 2 cut(s) 898, 1636
BsiSI CCGG 6 cut(s) 240, 336, 698, 771, 899, 1652
BslFI GGGAC 2 cut(s) 108, 1106
BslI CCNNNNNNNGG 5 cut(s) 163, 1090, 1426, 1563, 1769
BsmAI GTCTC 6 cut(s) 306, 330, 888, 928, 1825, 1912
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 108, 1106
BsmI GAATGC 2 cut(s) 250, 1178
BsnI GGCC 1 cut(s) 874
Bsp119I TTCGAA 1 cut(s) 514
Bsp1286I GDGCHC 3 cut(s) 67, 898, 1636
Bsp13I TCCGGA 2 cut(s) 697, 1651
Bsp19I CCATGG 1 cut(s) 887
BspACI CCGC 9 cut(s) 100, 582, 815, 1078, 1173, 1175, 1306, 1763, 1805
BspANI GGCC 1 cut(s) 874
BspCNI CTCAG 4 cut(s) 34, 109, 703, 802
BspDI ATCGAT 1 cut(s) 1002
BspEI TCCGGA 2 cut(s) 697, 1651
BspFNI CGCG 2 cut(s) 135, 1175
BspHI TCATGA 2 cut(s) 1191, 1786
BspLI GGNNCC 9 cut(s) 64, 244, 795, 810, 928, 1030, 1082, 1416, 1849
BspMI ACCTGC 1 cut(s) 1484
BspPI GGATC 7 cut(s) 230, 1007, 1075, 1088, 1194, 1409, 1422
BspT104I TTCGAA 1 cut(s) 514
BspT107I GGYRCC 4 cut(s) 62, 793, 926, 1028
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 6 cut(s) 66, 67, 544, 887, 995, 1173
BssNI GRCGYC 2 cut(s) 121, 794
BssT1I CCWWGG 2 cut(s) 544, 887
Bst2UI CCWGG 4 cut(s) 68, 309, 723, 1977
Bst4CI ACNGT 2 cut(s) 973, 1462
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 121, 794
BstBI TTCGAA 1 cut(s) 514
BstC8I GCNNGC 4 cut(s) 147, 219, 1281, 1800
BstDEI CTNAG 8 cut(s) 21, 96, 711, 789, 1044, 1292, 1335, 2006
BstDSI CCRYGG 2 cut(s) 887, 1173
BstF5I GGATG 4 cut(s) 706, 1660, 1938, 1972
BstFNI CGCG 2 cut(s) 135, 1175
BstH2I RGCGCY 1 cut(s) 797
BstHHI GCGC 2 cut(s) 137, 796
BstMAI GTCTC 6 cut(s) 306, 330, 888, 928, 1825, 1912
BstMWI GCNNNNNNNGC 9 cut(s) 281, 476, 590, 629, 727, 1106, 1175, 1285, 1759
BstNI CCWGG 4 cut(s) 68, 309, 723, 1977
BstNSI RCATGY 4 cut(s) 149, 323, 883, 1283
BstSCI CCNGG 6 cut(s) 66, 238, 307, 721, 769, 1975
BstSFI CTRYAG 3 cut(s) 585, 681, 756
BstSLI GKGCMC 1 cut(s) 67
BstUI CGCG 2 cut(s) 135, 1175
BstV1I GCAGC 3 cut(s) 577, 1522, 1814
BstV2I GAAGAC 3 cut(s) 30, 839, 1456
BstX2I RGATCY 3 cut(s) 1080, 1186, 1414
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 3 cut(s) 1080, 1186, 1414
Bsu15I ATCGAT 1 cut(s) 1002
Bsu36I CCTNAGG 1 cut(s) 711
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 1 cut(s) 874
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 2 cut(s) 887, 1173
BtrI CACGTC 1 cut(s) 1697
BtsCI GGATG 4 cut(s) 706, 1660, 1938, 1972
BtsI GCAGTG 2 cut(s) 79, 1440
BtsIMutI CAGTG 4 cut(s) 79, 978, 1440, 1458
BveI ACCTGC 1 cut(s) 1484
Cac8I GCNNGC 4 cut(s) 147, 219, 1281, 1800
CciI TCATGA 2 cut(s) 1191, 1786
CfoI GCGC 2 cut(s) 137, 796
Cfr42I CCGCGG 1 cut(s) 1176
ClaI ATCGAT 1 cut(s) 1002
Csp6I GTAC 2 cut(s) 171, 195
CviQI GTAC 2 cut(s) 171, 195
DdeI CTNAG 8 cut(s) 21, 96, 711, 789, 1044, 1292, 1335, 2006
DinI GGCGCC 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 544, 887
Eco57I CTGAAG 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 711
EcoRII CCWGG 4 cut(s) 66, 307, 721, 1975
EcoT14I CCWWGG 2 cut(s) 544, 887
EcoT22I ATGCAT 1 cut(s) 944
EgeI GGCGCC 1 cut(s) 795
EheI GGCGCC 1 cut(s) 795
ErhI CCWWGG 2 cut(s) 544, 887
Esp3I CGTCTC 1 cut(s) 306
FalI AAGNNNNNCTT 2 cut(s) 1607, 1639
FaqI GGGAC 2 cut(s) 108, 1106
FauI CCCGC 2 cut(s) 93, 1180
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 1 cut(s) 1015
Fnu4HI GCNGC 5 cut(s) 591, 1176, 1536, 1763, 1803
FokI GGATG 4 cut(s) 713, 1667, 1945, 1959
Fsp4HI GCNGC 5 cut(s) 591, 1176, 1536, 1763, 1803
FspBI CTAG 8 cut(s) 54, 138, 264, 876, 1361, 1692, 1703, 1749
GlaI GCGC 2 cut(s) 136, 795
GluI GCNGC 5 cut(s) 591, 1176, 1536, 1763, 1803
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 3 cut(s) 66, 795, 1814
HaeII RGCGCY 1 cut(s) 797
HaeIII GGCC 1 cut(s) 874
HapII CCGG 6 cut(s) 240, 336, 698, 771, 899, 1652
HhaI GCGC 2 cut(s) 137, 796
Hin1I GRCGYC 2 cut(s) 121, 794
Hin6I GCGC 2 cut(s) 135, 794
HinP1I GCGC 2 cut(s) 135, 794
HincII GTYRAC 1 cut(s) 1554
HindII GTYRAC 1 cut(s) 1554
HinfI GANTC 4 cut(s) 130, 835, 961, 1471
HpaII CCGG 6 cut(s) 240, 336, 698, 771, 899, 1652
HphI GGTGA 3 cut(s) 350, 355, 1156
Hpy166II GTNNAC 4 cut(s) 119, 1258, 1554, 1896
Hpy188I TCNGA 4 cut(s) 999, 1085, 1585, 1860
Hpy8I GTNNAC 4 cut(s) 119, 1258, 1554, 1896
HpyAV CCTTC 5 cut(s) 383, 1267, 1394, 1555, 1920
HpyCH4III ACNGT 2 cut(s) 973, 1462
HpyCH4IV ACGT 3 cut(s) 121, 197, 1696
HpyF10VI GCNNNNNNNGC 9 cut(s) 281, 476, 590, 629, 727, 1106, 1175, 1285, 1759
HpyF3I CTNAG 8 cut(s) 21, 96, 711, 789, 1044, 1292, 1335, 2006
HpySE526I ACGT 3 cut(s) 121, 197, 1696
Hsp92I GRCGYC 2 cut(s) 121, 794
HspAI GCGC 2 cut(s) 135, 794
KasI GGCGCC 1 cut(s) 793
Kpn2I TCCGGA 2 cut(s) 697, 1651
Ksp22I TGATCA 1 cut(s) 1015
KspI CCGCGG 1 cut(s) 1176
LmnI GCTCC 8 cut(s) 242, 814, 901, 1276, 1543, 1639, 1795, 1847
Lsp1109I GCAGC 3 cut(s) 577, 1522, 1814
LweI GCATC 6 cut(s) 1137, 1297, 1675, 1707, 1754, 1990
MaeI CTAG 8 cut(s) 54, 138, 264, 876, 1361, 1692, 1703, 1749
MaeII ACGT 3 cut(s) 121, 197, 1696
MaeIII GTNAC 3 cut(s) 967, 1116, 1462
MboII GAAGA 8 cut(s) 30, 296, 683, 844, 928, 988, 1461, 1627
MfeI CAATTG 2 cut(s) 839, 1754
MflI RGATCY 3 cut(s) 1080, 1186, 1414
MhlI GDGCHC 3 cut(s) 67, 898, 1636
Mly113I GGCGCC 1 cut(s) 794
MlyI GAGTC 2 cut(s) 124, 829
MmeI TCCRAC 1 cut(s) 1424
Mph1103I ATGCAT 1 cut(s) 944
MroI TCCGGA 2 cut(s) 697, 1651
MroXI GAANNNNTTC 2 cut(s) 675, 765
MseI TTAA 8 cut(s) 203, 230, 396, 413, 912, 1569, 1911, 1940
MslI CAYNNNNRTG 3 cut(s) 285, 1460, 1878
MspA1I CMGCKG 6 cut(s) 44, 100, 584, 815, 1175, 1805
MspI CCGG 6 cut(s) 240, 336, 698, 771, 899, 1652
MspR9I CCNGG 6 cut(s) 68, 240, 309, 723, 771, 1977
MunI CAATTG 2 cut(s) 839, 1754
Mva1269I GAATGC 2 cut(s) 250, 1178
MvaI CCWGG 4 cut(s) 68, 309, 723, 1977
MvnI CGCG 2 cut(s) 135, 1175
MwoI GCNNNNNNNGC 9 cut(s) 281, 476, 590, 629, 727, 1106, 1175, 1285, 1759
NarI GGCGCC 1 cut(s) 794
NciI CCSGG 2 cut(s) 240, 771
NcoI CCATGG 1 cut(s) 887
NdeI CATATG 1 cut(s) 636
NlaIV GGNNCC 9 cut(s) 64, 244, 795, 810, 928, 1030, 1082, 1416, 1849
NmuCI GTSAC 3 cut(s) 967, 1116, 1462
NsiI ATGCAT 1 cut(s) 944
NspI RCATGY 4 cut(s) 149, 323, 883, 1283
NspV TTCGAA 1 cut(s) 514
OliI CACNNNNGTG 2 cut(s) 1460, 1878
PaeI GCATGC 2 cut(s) 149, 1283
PagI TCATGA 2 cut(s) 1191, 1786
PasI CCCWGGG 1 cut(s) 67
PctI GAATGC 2 cut(s) 250, 1178
PdmI GAANNNNTTC 2 cut(s) 675, 765
PfeI GAWTC 2 cut(s) 961, 1471
PflFI GACNNNGTC 1 cut(s) 1698
PflMI CCANNNNNTGG 1 cut(s) 1426
PfoI TCCNGGA 3 cut(s) 238, 769, 1975
PkrI GCNGC 5 cut(s) 592, 1177, 1537, 1764, 1804
PleI GAGTC 2 cut(s) 124, 829
PluTI GGCGCC 1 cut(s) 797
PpsI GAGTC 2 cut(s) 124, 829
PshBI ATTAAT 1 cut(s) 203
Psp6I CCWGG 4 cut(s) 66, 307, 721, 1975
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 4 cut(s) 66, 307, 721, 1975
PspN4I GGNNCC 9 cut(s) 64, 244, 795, 810, 928, 1030, 1082, 1416, 1849
PsuI RGATCY 3 cut(s) 1080, 1186, 1414
PsyI GACNNNGTC 1 cut(s) 1698
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 172, 196
RsaNI GTAC 2 cut(s) 171, 195
RseI CAYNNNNRTG 3 cut(s) 285, 1460, 1878
SacII CCGCGG 1 cut(s) 1176
SaqAI TTAA 8 cut(s) 203, 230, 396, 413, 912, 1569, 1911, 1940
SatI GCNGC 5 cut(s) 591, 1176, 1536, 1763, 1803
SchI GAGTC 2 cut(s) 124, 829
ScrFI CCNGG 6 cut(s) 68, 240, 309, 723, 771, 1977
SduI GDGCHC 3 cut(s) 67, 898, 1636
SfaNI GCATC 6 cut(s) 1137, 1297, 1675, 1707, 1754, 1990
SfcI CTRYAG 3 cut(s) 585, 681, 756
SfoI GGCGCC 1 cut(s) 795
Sfr303I CCGCGG 1 cut(s) 1176
SfuI TTCGAA 1 cut(s) 514
SgrBI CCGCGG 1 cut(s) 1176
SmiMI CAYNNNNRTG 3 cut(s) 285, 1460, 1878
SmlI CTYRAG 1 cut(s) 1820
SmoI CTYRAG 1 cut(s) 1820
SphI GCATGC 2 cut(s) 149, 1283
SsiI CCGC 9 cut(s) 100, 582, 815, 1078, 1173, 1175, 1306, 1763, 1805
SspDI GGCGCC 1 cut(s) 793
SspI AATATT 1 cut(s) 1302
SspMI CTAG 8 cut(s) 54, 138, 264, 876, 1361, 1692, 1703, 1749
StyD4I CCNGG 6 cut(s) 66, 238, 307, 721, 769, 1975
StyI CCWWGG 2 cut(s) 544, 887
TaaI ACNGT 2 cut(s) 973, 1462
TaiI ACGT 3 cut(s) 124, 200, 1699
TaqI TCGA 5 cut(s) 402, 514, 1002, 1439, 1729
TaqII GACCGA 1 cut(s) 1104
TauI GCSGC 2 cut(s) 1178, 1765
TfiI GAWTC 2 cut(s) 961, 1471
Tru1I TTAA 8 cut(s) 203, 230, 396, 413, 912, 1569, 1911, 1940
Tru9I TTAA 8 cut(s) 203, 230, 396, 413, 912, 1569, 1911, 1940
TscAI CASTG 4 cut(s) 79, 978, 1440, 1465
TseFI GTSAC 3 cut(s) 967, 1116, 1462
TseI GCWGC 3 cut(s) 590, 1535, 1802
Tsp45I GTSAC 3 cut(s) 967, 1116, 1462
TspDTI ATGAA 5 cut(s) 243, 247, 1171, 1208, 1228
TspGWI ACGGA 2 cut(s) 978, 1481
TspRI CASTG 4 cut(s) 79, 978, 1440, 1465
Tth111I GACNNNGTC 1 cut(s) 1698
Van91I CCANNNNNTGG 1 cut(s) 1426
VspI ATTAAT 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 1691
XceI RCATGY 4 cut(s) 149, 323, 883, 1283
XmnI GAANNNNTTC 2 cut(s) 675, 765
XspI CTAG 8 cut(s) 54, 138, 264, 876, 1361, 1692, 1703, 1749
ZraI GACGTC 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.