transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 148 - 198 | 2.2e-24 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 253 |
| AccBSI | CCGCTC | 1 cut(s) | 238 |
| AciI | CCGC | 2 cut(s) | 238, 526 |
| AclWI | GGATC | 3 cut(s) | 596, 670, 786 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AfaI | GTAC | 5 cut(s) | 28, 558, 593, 672, 699 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 253, 411, 434, 709 |
| AflIII | ACRYGT | 1 cut(s) | 610 |
| AgsI | TTSAA | 2 cut(s) | 351, 755 |
| AjiI | CACGTC | 1 cut(s) | 574 |
| AluBI | AGCT | 4 cut(s) | 83, 157, 377, 761 |
| AluI | AGCT | 4 cut(s) | 83, 157, 377, 761 |
| Alw26I | GTCTC | 1 cut(s) | 580 |
| AlwI | GGATC | 3 cut(s) | 596, 670, 786 |
| AoxI | GGCC | 1 cut(s) | 312 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AspS9I | GGNCC | 2 cut(s) | 399, 485 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 737 |
| AvaII | GGWCC | 2 cut(s) | 399, 485 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 654, 686 |
| BccI | CCATC | 5 cut(s) | 29, 38, 218, 219, 313 |
| BciVI | GTATCC | 1 cut(s) | 807 |
| BcoDI | GTCTC | 1 cut(s) | 580 |
| BfuI | GTATCC | 1 cut(s) | 807 |
| BmcAI | AGTACT | 1 cut(s) | 699 |
| Bme18I | GGWCC | 2 cut(s) | 399, 485 |
| BmgBI | CACGTC | 1 cut(s) | 574 |
| BmgT120I | GGNCC | 2 cut(s) | 399, 485 |
| BmiI | GGNNCC | 4 cut(s) | 366, 401, 487, 771 |
| BpuEI | CTTGAG | 1 cut(s) | 537 |
| BsaJI | CCNNGG | 2 cut(s) | 428, 473 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 253, 411, 434, 709 |
| Bse1I | ACTGG | 1 cut(s) | 668 |
| BseDI | CCNNGG | 2 cut(s) | 428, 473 |
| BseGI | GGATG | 4 cut(s) | 40, 148, 211, 421 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 253, 411, 434, 709 |
| BseMII | CTCAG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 668 |
| BshFI | GGCC | 1 cut(s) | 314 |
| BsiWI | CGTACG | 1 cut(s) | 26 |
| BslFI | GGGAC | 1 cut(s) | 471 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 253, 411, 434, 709 |
| BsmAI | GTCTC | 1 cut(s) | 580 |
| BsmBI | CGTCTC | 1 cut(s) | 580 |
| BsmFI | GGGAC | 1 cut(s) | 471 |
| BsnI | GGCC | 1 cut(s) | 314 |
| Bsp143I | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| BspACI | CCGC | 2 cut(s) | 238, 526 |
| BspANI | GGCC | 1 cut(s) | 314 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspLI | GGNNCC | 4 cut(s) | 366, 401, 487, 771 |
| BspPI | GGATC | 3 cut(s) | 596, 670, 786 |
| BsrBI | CCGCTC | 1 cut(s) | 238 |
| BsrI | ACTGG | 1 cut(s) | 668 |
| BssECI | CCNNGG | 2 cut(s) | 428, 473 |
| BssMI | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| BssT1I | CCWWGG | 2 cut(s) | 428, 473 |
| Bst4CI | ACNGT | 3 cut(s) | 341, 393, 795 |
| BstDEI | CTNAG | 2 cut(s) | 234, 467 |
| BstF5I | GGATG | 4 cut(s) | 40, 148, 211, 421 |
| BstKTI | GATC | 6 cut(s) | 67, 604, 625, 678, 685, 781 |
| BstMAI | GTCTC | 1 cut(s) | 580 |
| BstMBI | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| BstNSI | RCATGY | 1 cut(s) | 614 |
| BstX2I | RGATCY | 1 cut(s) | 675 |
| BstYI | RGATCY | 1 cut(s) | 675 |
| BsuI | GTATCC | 1 cut(s) | 807 |
| BsuRI | GGCC | 1 cut(s) | 314 |
| BtrI | CACGTC | 1 cut(s) | 574 |
| BtsCI | GGATG | 4 cut(s) | 40, 148, 211, 421 |
| BtsI | GCAGTG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 398, 597 |
| Cfr13I | GGNCC | 2 cut(s) | 399, 485 |
| Csp6I | GTAC | 5 cut(s) | 27, 557, 592, 671, 698 |
| CviAII | CATG | 3 cut(s) | 161, 580, 611 |
| CviJI | RGCY | 8 cut(s) | 83, 157, 272, 314, 365, 377, 533, 761 |
| CviKI_1 | RGCY | 8 cut(s) | 83, 157, 272, 314, 365, 377, 533, 761 |
| CviQI | GTAC | 5 cut(s) | 27, 557, 592, 671, 698 |
| DdeI | CTNAG | 2 cut(s) | 234, 467 |
| DpnI | GATC | 6 cut(s) | 66, 603, 624, 677, 684, 780 |
| DpnII | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| DraI | TTTAAA | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 2 cut(s) | 428, 473 |
| Eco47I | GGWCC | 2 cut(s) | 399, 485 |
| EcoO109I | RGGNCCY | 1 cut(s) | 399 |
| EcoT14I | CCWWGG | 2 cut(s) | 428, 473 |
| ErhI | CCWWGG | 2 cut(s) | 428, 473 |
| Esp3I | CGTCTC | 1 cut(s) | 580 |
| FaeI | CATG | 3 cut(s) | 164, 583, 614 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 92, 124 |
| FaqI | GGGAC | 1 cut(s) | 471 |
| FatI | CATG | 3 cut(s) | 160, 579, 610 |
| FokI | GGATG | 4 cut(s) | 47, 155, 198, 428 |
| HaeIII | GGCC | 1 cut(s) | 314 |
| Hin1II | CATG | 3 cut(s) | 164, 583, 614 |
| HindIII | AAGCTT | 2 cut(s) | 155, 375 |
| HinfI | GANTC | 2 cut(s) | 69, 742 |
| HphI | GGTGA | 2 cut(s) | 64, 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 169, 455, 559 |
| Hpy188I | TCNGA | 2 cut(s) | 235, 704 |
| Hpy188III | TCNNGA | 2 cut(s) | 247, 689 |
| Hpy8I | GTNNAC | 3 cut(s) | 169, 455, 559 |
| Hpy99I | CGWCG | 1 cut(s) | 690 |
| HpyAV | CCTTC | 2 cut(s) | 427, 615 |
| HpyCH4III | ACNGT | 3 cut(s) | 341, 393, 795 |
| HpyCH4IV | ACGT | 1 cut(s) | 573 |
| HpyCH4V | TGCA | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 2 cut(s) | 234, 467 |
| HpySE526I | ACGT | 1 cut(s) | 573 |
| Hsp92II | CATG | 3 cut(s) | 164, 583, 614 |
| Kzo9I | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| LpnPI | CCDG | 8 cut(s) | 17, 77, 260, 500, 633, 681, 761, 786 |
| MaeII | ACGT | 1 cut(s) | 573 |
| MaeIII | GTNAC | 3 cut(s) | 18, 341, 615 |
| MalI | GATC | 6 cut(s) | 66, 603, 624, 677, 684, 780 |
| MbiI | CCGCTC | 1 cut(s) | 238 |
| MboI | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| MboII | GAAGA | 5 cut(s) | 269, 656, 671, 674, 767 |
| MflI | RGATCY | 1 cut(s) | 675 |
| MluCI | AATT | 8 cut(s) | 122, 147, 173, 188, 194, 284, 419, 507 |
| MlyI | GAGTC | 1 cut(s) | 63 |
| MnlI | CCTC | 8 cut(s) | 33, 225, 261, 452, 549, 732, 769, 780 |
| MseI | TTAA | 4 cut(s) | 99, 288, 650, 726 |
| NdeII | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| NlaIII | CATG | 3 cut(s) | 164, 583, 614 |
| NlaIV | GGNNCC | 4 cut(s) | 366, 401, 487, 771 |
| NspI | RCATGY | 1 cut(s) | 614 |
| PciI | ACATGT | 1 cut(s) | 610 |
| PfeI | GAWTC | 1 cut(s) | 742 |
| Pfl23II | CGTACG | 1 cut(s) | 26 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 253 |
| PleI | GAGTC | 1 cut(s) | 63 |
| PpsI | GAGTC | 1 cut(s) | 63 |
| PpuMI | RGGWCCY | 1 cut(s) | 399 |
| PscI | ACATGT | 1 cut(s) | 610 |
| Psp5II | RGGWCCY | 1 cut(s) | 399 |
| PspLI | CGTACG | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 4 cut(s) | 366, 401, 487, 771 |
| PspPI | GGNCC | 2 cut(s) | 399, 485 |
| PspPPI | RGGWCCY | 1 cut(s) | 399 |
| PsuI | RGATCY | 1 cut(s) | 675 |
| RsaI | GTAC | 5 cut(s) | 28, 558, 593, 672, 699 |
| RsaNI | GTAC | 5 cut(s) | 27, 557, 592, 671, 698 |
| SaqAI | TTAA | 4 cut(s) | 99, 288, 650, 726 |
| Sau3AI | GATC | 6 cut(s) | 64, 601, 622, 675, 682, 778 |
| Sau96I | GGNCC | 2 cut(s) | 399, 485 |
| ScaI | AGTACT | 1 cut(s) | 699 |
| SchI | GAGTC | 1 cut(s) | 63 |
| SinI | GGWCC | 2 cut(s) | 399, 485 |
| SmlI | CTYRAG | 1 cut(s) | 552 |
| SmoI | CTYRAG | 1 cut(s) | 552 |
| Sse9I | AATT | 8 cut(s) | 122, 147, 173, 188, 194, 284, 419, 507 |
| SsiI | CCGC | 2 cut(s) | 238, 526 |
| StyI | CCWWGG | 2 cut(s) | 428, 473 |
| TaaI | ACNGT | 3 cut(s) | 341, 393, 795 |
| TaiI | ACGT | 1 cut(s) | 576 |
| TaqI | TCGA | 1 cut(s) | 67 |
| TasI | AATT | 8 cut(s) | 122, 147, 173, 188, 194, 284, 419, 507 |
| TatI | WGTACW | 4 cut(s) | 556, 591, 670, 697 |
| TfiI | GAWTC | 1 cut(s) | 742 |
| Tru1I | TTAA | 4 cut(s) | 99, 288, 650, 726 |
| Tru9I | TTAA | 4 cut(s) | 99, 288, 650, 726 |
| TscAI | CASTG | 3 cut(s) | 208, 398, 604 |
| TspDTI | ATGAA | 4 cut(s) | 149, 159, 432, 672 |
| TspRI | CASTG | 3 cut(s) | 208, 398, 604 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 2 cut(s) | 399, 485 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XceI | RCATGY | 1 cut(s) | 614 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 353 |
| ZrmI | AGTACT | 1 cut(s) | 699 |