Rw6G006670

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000094
Physical Location & Seq
Forward (+)
10718972 .. 10721744
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006670.1

Sequence Viewer

Length: 1746 bp
ATGAATAAAGGTTGTCAGGCTTATTTAGCACACATTGTGGATACAAAGAGGGCGGTGTTGAGCATTGAGGATATTCCTGTGGTCAGGAAGTTTCCGGATGTGTTTCCCGATGAACTACCTGGTTTACCTCCAGAAAGGGAAATAGATTTTACCATTGAGTTGCTCCCTGGTACTGCACCTATATTTCAGGCACCTTATAGAATGGCCCCAGCTGAGTTAAAAGAGTTGAAGACCCAGTTACAGGAGTTGTTGGATAAAGGGTTCATCCGGCCAAGTGTGTCCCCTTGGGGTGCTCCGGTGCTTTTTGTTAAGAAGAAGGATGGCACTTTGAGGTTGTGTATTGATTATAGAAAATTGAATAAGCTCCGGATAAGAGAGTCCGATGTACCCAAGACAGCATTCCGATCACGCTATGGTCACTACGAATTTGTGGTGATGCCTTTTGGATTAACCAATGCTCCTGCAGCCTTTATGGATCTTATGAATCGAGTGGAAGCGGTTTTGAATTGGGGAAGACCCACCACAGTGACGGAGATTCGTAGTTTCTTGGGTTTAGCCGGTTATTATCGGCGGTTCGTGCAGGATTTCTCTAAGCTTGCAGCCCCCCTCACTAAATTGACCAGGAAAGGTGCTAAATTTCATGGGAATGTGATTGCTTACGCATCTAGACAGCTGAAACCTCACGAAATAAACTACCCAACTCATGACCTTGAGCTTGCTGCTGTATATCTACTTAATCAAAGGGACTTAAATTTGAGGCAAAGGAGGTGGTTAGAGTTGATTAAGGACTATGATTGCACAATTGAGTACCATCCAGGAAGGGCTAATGTGGTAGCTGATGCACTTAGCCGAAAGCCCTCTAGCTCTTTAGCCCATTTGAAGACAGTTCGAGTCCCTTTACTTTATGCATTGCGATCTACAGGAGTTAATTTGGCAATTGAAGAAGGGTCTGGAGCATTGTTAGCTAGCTTCCATAATAGAATATGTGTACCTAATCTTCCTGATATTAAACGAGAAATTTTGGATGAGGCTCATAGTTCTGCTTACGCTATGCATCCTGGCGGGACAAAAATAAACCTTCAGGATTGCTACAGCCGTTGCCTATTCCGGAGTGGAAGTGGGAGCACATCACCATGGATTTTGTTTCAGGTCTTCCACGAACTCGCAATGGCCATGATACTGGCGGAACTTTATGTAAATGAAATCGTGAAACTTCATGGACCACCCGTTTCCATTGTCTCTGATCGAGATCCTCGTTTCACCTCAAAATTTTGGAAGAGTCTACACGAGGCTTTAGGTACTGGATTAAGTTTTAGCACGGCATTTCATCCACAGACTGATGGTTATCATTCCAGTATTGACATGGCTCCTTACGAAGCTCTCTATGGAAGACAATGTCGTACACCCTTATGTTGGAATGAAGTGGGAGAAAGGAAGCTCATAGGTCCAGAGATTAAACTCAGGACAGCTCAGAGTAGACAAAAGAGTTATGCGGATAACCGCAGGAAAGACTTGGAATTCCAAGAAGGTGATTGGGTGTTCTTGAAATTGTCCCCTTGGAAGGGTGTTGTAAGATTTGGAAAGCGAGGGAAGCTTAGTCCCCGATTTATTGGACCTTTTATGATTAAAGATCGAGTTGGCCCAGTTGCATACAGATTGATTCTACCTCTAAGGTTATCAAAGATTCATGATGTCTTCCACGTGTCCCTACTCCGCAAGTATATTGCTGATCCCTCCCATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

581

Amino Acids

66.09

Weight (kDa)

9.56

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 510 - 574 3.3e-25 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AccI GTMKAC 2 cut(s) 1282, 1477
AccIII TCCGGA 3 cut(s) 94, 366, 1107
AciI CCGC 8 cut(s) 53, 497, 571, 1062, 1184, 1493, 1501, 1714
AclWI GGATC 3 cut(s) 483, 1244, 1724
AcoI YGGCCR 2 cut(s) 269, 1170
AcsI RAATTY 6 cut(s) 425, 635, 751, 1017, 1268, 1517
AcuI CTGAAG 1 cut(s) 1064
AcvI CACGTG 1 cut(s) 1702
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 6 cut(s) 172, 387, 809, 990, 1300, 1402
AfiI CCNNNNNNNGG 4 cut(s) 241, 1413, 1561, 1562
AflIII ACRYGT 1 cut(s) 1701
AgsI TTSAA 6 cut(s) 229, 358, 505, 880, 941, 1546
AjnI CCWGG 5 cut(s) 118, 166, 620, 814, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AleI CACNNNNGTG 1 cut(s) 524
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
Alw21I GWGCWC 2 cut(s) 295, 1127
Alw26I GTCTC 1 cut(s) 1243
AlwI GGATC 3 cut(s) 483, 1244, 1724
Aor13HI TCCGGA 3 cut(s) 94, 366, 1107
AoxI GGCC 4 cut(s) 204, 269, 1170, 1639
ApeKI GCWGC 3 cut(s) 464, 599, 719
ApoI RAATTY 6 cut(s) 425, 635, 751, 1017, 1268, 1517
AspS9I GGNCC 5 cut(s) 205, 1220, 1445, 1613, 1640
AsuHPI GGTGA 4 cut(s) 445, 1122, 1252, 1541
AsuNHI GCTAGC 1 cut(s) 965
AvaII GGWCC 3 cut(s) 1220, 1445, 1613
BalI TGGCCA 1 cut(s) 1172
BanI GGYRCC 1 cut(s) 190
BarI GAAGNNNNNNTAC 2 cut(s) 981, 1013
BauI CACGAG 1 cut(s) 1286
BbrPI CACGTG 1 cut(s) 1702
BbsI GAAGAC 6 cut(s) 236, 520, 887, 1144, 1396, 1687
Bbv12I GWGCWC 2 cut(s) 295, 1127
BbvI GCAGC 3 cut(s) 476, 611, 706
BccI CCATC 3 cut(s) 314, 819, 1334
BceAI ACGGC 2 cut(s) 1080, 1335
BciT130I CCWGG 5 cut(s) 120, 168, 622, 816, 1059
BciVI GTATCC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 1243
BfaI CTAG 3 cut(s) 666, 861, 966
BfmI CTRYAG 3 cut(s) 462, 918, 1090
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 3 cut(s) 465, 600, 720
BlsI GCNGC 3 cut(s) 466, 601, 721
Bme1390I CCNGG 5 cut(s) 120, 168, 622, 816, 1059
Bme18I GGWCC 3 cut(s) 1220, 1445, 1613
BmgT120I GGNCC 5 cut(s) 205, 1220, 1445, 1613, 1640
BmiI GGNNCC 3 cut(s) 192, 207, 1368
BmrFI CCNGG 5 cut(s) 120, 168, 622, 816, 1059
BmrI ACTGGG 2 cut(s) 229, 1637
BmsI GCATC 4 cut(s) 426, 671, 829, 1063
BmtI GCTAGC 1 cut(s) 969
BmuI ACTGGG 2 cut(s) 229, 1637
BpiI GAAGAC 6 cut(s) 236, 520, 887, 1144, 1396, 1687
BpmI CTGGAG 2 cut(s) 114, 972
BpuEI CTTGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 1702
BsaBI GATNNNNATC 2 cut(s) 1248, 1344
BsaJI CCNNGG 4 cut(s) 166, 284, 1133, 1556
BsaWI WCCGGW 4 cut(s) 94, 295, 366, 1107
BsaXI ACNNNNNCTCC 4 cut(s) 442, 472, 1102, 1132
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 1413, 1561, 1562
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 5 cut(s) 235, 1185, 1306, 1353, 1643
Bse3DI GCAATG 2 cut(s) 908, 1173
Bse8I GATNNNNATC 2 cut(s) 1248, 1344
BseAI TCCGGA 3 cut(s) 94, 366, 1107
BseBI CCWGG 5 cut(s) 120, 168, 622, 816, 1059
BseDI CCNNGG 4 cut(s) 166, 284, 1133, 1556
BseGI GGATG 7 cut(s) 103, 264, 325, 811, 1030, 1054, 1327
BseJI GATNNNNATC 2 cut(s) 1248, 1344
BseLI CCNNNNNNNGG 4 cut(s) 241, 1413, 1561, 1562
BseMI GCAATG 2 cut(s) 908, 1173
BseMII CTCAG 3 cut(s) 204, 1474, 1484
BseNI ACTGG 5 cut(s) 235, 1185, 1306, 1353, 1643
BseXI GCAGC 3 cut(s) 476, 611, 706
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 2 cut(s) 159, 599
BshFI GGCC 4 cut(s) 206, 271, 1172, 1641
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 295, 1127
BsiSI CCGG 6 cut(s) 95, 268, 296, 367, 558, 1108
BslFI GGGAC 7 cut(s) 265, 758, 878, 1078, 1537, 1584, 1690
BslI CCNNNNNNNGG 4 cut(s) 241, 1413, 1561, 1562
BsmAI GTCTC 1 cut(s) 1243
BsmFI GGGAC 7 cut(s) 265, 758, 878, 1078, 1537, 1584, 1690
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 4 cut(s) 206, 271, 1172, 1641
Bsp1286I GDGCHC 2 cut(s) 295, 1127
Bsp13I TCCGGA 3 cut(s) 94, 366, 1107
Bsp143I GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
Bsp19I CCATGG 1 cut(s) 1133
BspACI CCGC 8 cut(s) 53, 497, 571, 1062, 1184, 1493, 1501, 1714
BspANI GGCC 4 cut(s) 206, 271, 1172, 1641
BspCNI CTCAG 3 cut(s) 205, 1473, 1483
BspEI TCCGGA 3 cut(s) 94, 366, 1107
BspHI TCATGA 2 cut(s) 703, 1687
BspLI GGNNCC 3 cut(s) 192, 207, 1368
BspMAI CTGCAG 1 cut(s) 466
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 3 cut(s) 483, 1244, 1724
BspT107I GGYRCC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 908, 1173
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 5 cut(s) 235, 1185, 1306, 1353, 1643
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 4 cut(s) 166, 284, 1133, 1556
BssMI GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
BssSI CACGAG 1 cut(s) 1286
BssT1I CCWWGG 3 cut(s) 284, 1133, 1556
Bst2BI CACGAG 1 cut(s) 1286
Bst2UI CCWGG 5 cut(s) 120, 168, 622, 816, 1059
Bst4CI ACNGT 2 cut(s) 526, 886
Bst6I CTCTTC 1 cut(s) 1271
BstBAI YACGTR 1 cut(s) 1702
BstC8I GCNNGC 3 cut(s) 597, 717, 967
BstDEI CTNAG 7 cut(s) 213, 591, 845, 1460, 1470, 1595, 1670
BstDSI CCRYGG 1 cut(s) 1133
BstF5I GGATG 7 cut(s) 103, 264, 325, 811, 1030, 1054, 1327
BstKTI GATC 7 cut(s) 407, 478, 917, 1246, 1252, 1633, 1732
BstMAI GTCTC 1 cut(s) 1243
BstMBI GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
BstMWI GCNNNNNNNGC 5 cut(s) 26, 464, 577, 962, 1591
BstNI CCWGG 5 cut(s) 120, 168, 622, 816, 1059
BstSCI CCNGG 5 cut(s) 118, 166, 620, 814, 1057
BstSFI CTRYAG 3 cut(s) 462, 918, 1090
BstV1I GCAGC 3 cut(s) 476, 611, 706
BstV2I GAAGAC 6 cut(s) 236, 520, 887, 1144, 1396, 1687
BstX2I RGATCY 2 cut(s) 475, 1249
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 2 cut(s) 475, 1249
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 4 cut(s) 206, 271, 1172, 1641
BtgI CCRYGG 1 cut(s) 1133
BtsCI GGATG 7 cut(s) 103, 264, 325, 811, 1030, 1054, 1327
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 3 cut(s) 597, 717, 967
CciI TCATGA 2 cut(s) 703, 1687
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 5 cut(s) 205, 1220, 1445, 1613, 1640
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 6 cut(s) 171, 386, 808, 989, 1299, 1401
CspCI CAANNNNNGTGG 2 cut(s) 749, 784
CviAII CATG 8 cut(s) 641, 704, 1134, 1174, 1217, 1363, 1688, 1739
CviQI GTAC 6 cut(s) 171, 386, 808, 989, 1299, 1401
DdeI CTNAG 7 cut(s) 213, 591, 845, 1460, 1470, 1595, 1670
DpnI GATC 7 cut(s) 406, 477, 916, 1245, 1251, 1632, 1731
DpnII GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 269, 1170
Eam1104I CTCTTC 1 cut(s) 1271
EarI CTCTTC 1 cut(s) 1271
EciI GGCGGA 1 cut(s) 1199
Eco130I CCWWGG 3 cut(s) 284, 1133, 1556
Eco47I GGWCC 3 cut(s) 1220, 1445, 1613
Eco57I CTGAAG 1 cut(s) 1064
Eco72I CACGTG 1 cut(s) 1702
EcoRI GAATTC 1 cut(s) 1517
EcoRII CCWGG 5 cut(s) 118, 166, 620, 814, 1057
EcoT14I CCWWGG 3 cut(s) 284, 1133, 1556
EcoT22I ATGCAT 2 cut(s) 910, 1056
ErhI CCWWGG 3 cut(s) 284, 1133, 1556
FaeI CATG 8 cut(s) 644, 707, 1137, 1177, 1220, 1366, 1691, 1742
FaqI GGGAC 7 cut(s) 265, 758, 878, 1078, 1537, 1584, 1690
FatI CATG 8 cut(s) 640, 703, 1133, 1173, 1216, 1362, 1687, 1738
FauI CCCGC 1 cut(s) 1055
FblI GTMKAC 2 cut(s) 1282, 1477
Fnu4HI GCNGC 3 cut(s) 465, 600, 720
FokI GGATG 7 cut(s) 110, 251, 332, 798, 1037, 1041, 1314
Fsp4HI GCNGC 3 cut(s) 465, 600, 720
FspBI CTAG 3 cut(s) 666, 861, 966
GluI GCNGC 3 cut(s) 465, 600, 720
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 2 cut(s) 114, 972
HaeIII GGCC 4 cut(s) 206, 271, 1172, 1641
HapII CCGG 6 cut(s) 95, 268, 296, 367, 558, 1108
Hin1II CATG 8 cut(s) 644, 707, 1137, 1177, 1220, 1366, 1691, 1742
HindIII AAGCTT 2 cut(s) 593, 1592
HinfI GANTC 7 cut(s) 377, 484, 535, 891, 1279, 1660, 1684
HpaII CCGG 6 cut(s) 95, 268, 296, 367, 558, 1108
HphI GGTGA 4 cut(s) 445, 1122, 1252, 1541
Hpy166II GTNNAC 5 cut(s) 125, 989, 1283, 1403, 1478
Hpy188I TCNGA 4 cut(s) 382, 404, 1243, 1473
Hpy8I GTNNAC 5 cut(s) 125, 989, 1283, 1403, 1478
HpyAV CCTTC 6 cut(s) 310, 813, 938, 1088, 1520, 1555
HpyCH4III ACNGT 2 cut(s) 526, 886
HpyCH4IV ACGT 1 cut(s) 1701
HpyCH4V TGCA 9 cut(s) 176, 464, 580, 599, 798, 842, 908, 1054, 1649
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 464, 577, 962, 1591
HpyF3I CTNAG 7 cut(s) 213, 591, 845, 1460, 1470, 1595, 1670
HpySE526I ACGT 1 cut(s) 1701
Hsp92II CATG 8 cut(s) 644, 707, 1137, 1177, 1220, 1366, 1691, 1742
Kpn2I TCCGGA 3 cut(s) 94, 366, 1107
Kzo9I GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
LmnI GCTCC 7 cut(s) 168, 298, 369, 463, 953, 1122, 1372
Lsp1109I GCAGC 3 cut(s) 476, 611, 706
LweI GCATC 4 cut(s) 426, 671, 829, 1063
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 3 cut(s) 666, 861, 966
MaeII ACGT 1 cut(s) 1701
MaeIII GTNAC 3 cut(s) 237, 416, 526
MalI GATC 7 cut(s) 406, 477, 916, 1245, 1251, 1632, 1731
MboI GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
MfeI CAATTG 2 cut(s) 801, 936
MflI RGATCY 2 cut(s) 475, 1249
MhlI GDGCHC 2 cut(s) 295, 1127
MlsI TGGCCA 1 cut(s) 1172
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 3 cut(s) 386, 900, 1288
MmeI TCCRAC 2 cut(s) 231, 1394
Mox20I TGGCCA 1 cut(s) 1172
Mph1103I ATGCAT 2 cut(s) 910, 1056
MroI TCCGGA 3 cut(s) 94, 366, 1107
MscI TGGCCA 1 cut(s) 1172
MslI CAYNNNNRTG 4 cut(s) 524, 645, 1132, 1408
Msp20I TGGCCA 1 cut(s) 1172
MspA1I CMGCKG 2 cut(s) 212, 673
MspI CCGG 6 cut(s) 95, 268, 296, 367, 558, 1108
MspR9I CCNGG 5 cut(s) 120, 168, 622, 816, 1059
MunI CAATTG 2 cut(s) 801, 936
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 5 cut(s) 120, 168, 622, 816, 1059
MwoI GCNNNNNNNGC 5 cut(s) 26, 464, 577, 962, 1591
NcoI CCATGG 1 cut(s) 1133
NdeII GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 8 cut(s) 644, 707, 1137, 1177, 1220, 1366, 1691, 1742
NlaIV GGNNCC 3 cut(s) 192, 207, 1368
NmuCI GTSAC 2 cut(s) 416, 526
NsiI ATGCAT 2 cut(s) 910, 1056
OliI CACNNNNGTG 1 cut(s) 524
PagI TCATGA 2 cut(s) 703, 1687
PcsI WCGNNNNNNNCGW 1 cut(s) 1252
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 4 cut(s) 484, 535, 1660, 1684
PflFI GACNNNGTC 1 cut(s) 1395
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 3 cut(s) 466, 601, 721
PleI GAGTC 3 cut(s) 385, 899, 1287
PmaCI CACGTG 1 cut(s) 1702
PmlI CACGTG 1 cut(s) 1702
PpsI GAGTC 3 cut(s) 385, 899, 1287
Ppu21I YACGTR 1 cut(s) 1702
Psp6I CCWGG 5 cut(s) 118, 166, 620, 814, 1057
PspCI CACGTG 1 cut(s) 1702
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 5 cut(s) 118, 166, 620, 814, 1057
PspN4I GGNNCC 3 cut(s) 192, 207, 1368
PspPI GGNCC 5 cut(s) 205, 1220, 1445, 1613, 1640
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 475, 1249
PsyI GACNNNGTC 1 cut(s) 1395
PvuII CAGCTG 2 cut(s) 212, 673
RsaI GTAC 6 cut(s) 172, 387, 809, 990, 1300, 1402
RsaNI GTAC 6 cut(s) 171, 386, 808, 989, 1299, 1401
RseI CAYNNNNRTG 4 cut(s) 524, 645, 1132, 1408
SatI GCNGC 3 cut(s) 465, 600, 720
Sau3AI GATC 7 cut(s) 404, 475, 914, 1243, 1249, 1630, 1729
Sau96I GGNCC 5 cut(s) 205, 1220, 1445, 1613, 1640
SchI GAGTC 3 cut(s) 386, 900, 1288
ScrFI CCNGG 5 cut(s) 120, 168, 622, 816, 1059
SduI GDGCHC 2 cut(s) 295, 1127
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 4 cut(s) 426, 671, 829, 1063
SfcI CTRYAG 3 cut(s) 462, 918, 1090
SinI GGWCC 3 cut(s) 1220, 1445, 1613
SmiMI CAYNNNNRTG 4 cut(s) 524, 645, 1132, 1408
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SsiI CCGC 8 cut(s) 53, 497, 571, 1062, 1184, 1493, 1501, 1714
SspMI CTAG 3 cut(s) 666, 861, 966
StyD4I CCNGG 5 cut(s) 118, 166, 620, 814, 1057
StyI CCWWGG 3 cut(s) 284, 1133, 1556
TaaI ACNGT 2 cut(s) 526, 886
TaiI ACGT 1 cut(s) 1704
TaqI TCGA 4 cut(s) 487, 889, 1246, 1633
TfiI GAWTC 4 cut(s) 484, 535, 1660, 1684
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 416, 526
TseI GCWGC 3 cut(s) 464, 599, 719
Tsp45I GTSAC 2 cut(s) 416, 526
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 531
Tth111I GACNNNGTC 1 cut(s) 1395
VpaK11BI GGWCC 3 cut(s) 1220, 1445, 1613
XapI RAATTY 6 cut(s) 425, 635, 751, 1017, 1268, 1517
XbaI TCTAGA 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 1360
XmiI GTMKAC 2 cut(s) 1282, 1477
XspI CTAG 3 cut(s) 666, 861, 966
Zsp2I ATGCAT 2 cut(s) 910, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.