protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 565 - 720 | 1.7e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 784 - 881 | 1.6e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 808 - 911 | 8.5e-36 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1013 - 1070 | 1.2e-11 | Integrase zinc binding domain |
| rve | PF00665 | 1091 - 1184 | 2.8e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1519 |
| Acc16I | TGCGCA | 1 cut(s) | 2547 |
| Acc36I | ACCTGC | 1 cut(s) | 2255 |
| Acc65I | GGTACC | 1 cut(s) | 13 |
| AccB1I | GGYRCC | 3 cut(s) | 13, 2401, 2413 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1419, 4135 |
| AccBSI | CCGCTC | 2 cut(s) | 1641, 2377 |
| AccI | GTMKAC | 1 cut(s) | 912 |
| AccIII | TCCGGA | 1 cut(s) | 1291 |
| AclI | AACGTT | 3 cut(s) | 1331, 1880, 2769 |
| AclWI | GGATC | 7 cut(s) | 407, 734, 747, 1758, 1872, 2804, 2817 |
| AcoI | YGGCCR | 5 cut(s) | 1410, 1699, 2152, 2817, 3937 |
| AcsI | RAATTY | 7 cut(s) | 626, 855, 1470, 2932, 3214, 3449, 4076 |
| AcyI | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| AdeI | CACNNNGTG | 2 cut(s) | 1708, 4135 |
| AfaI | GTAC | 8 cut(s) | 15, 775, 1967, 2148, 2799, 3184, 3326, 3719 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 654, 1419, 1594, 4135 |
| AflII | CTTAAG | 2 cut(s) | 734, 2963 |
| AflIII | ACRYGT | 3 cut(s) | 1849, 1886, 3256 |
| AgeI | ACCGGT | 1 cut(s) | 1615 |
| AjnI | CCWGG | 3 cut(s) | 742, 3431, 3979 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1582, 1614 |
| AleI | CACNNNNGTG | 2 cut(s) | 1652, 2231 |
| Alw21I | GWGCWC | 2 cut(s) | 647, 2484 |
| Alw26I | GTCTC | 3 cut(s) | 939, 1049, 4150 |
| Alw44I | GTGCAC | 1 cut(s) | 643 |
| AlwI | GGATC | 7 cut(s) | 407, 734, 747, 1758, 1872, 2804, 2817 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 362, 407 |
| Ama87I | CYCGRG | 1 cut(s) | 3393 |
| Aor13HI | TCCGGA | 1 cut(s) | 1291 |
| ApaLI | GTGCAC | 1 cut(s) | 643 |
| ApeKI | GCWGC | 4 cut(s) | 304, 1190, 2503, 4157 |
| ApoI | RAATTY | 7 cut(s) | 626, 855, 1470, 2932, 3214, 3449, 4076 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 894, 926, 2924, 2956 |
| AsiGI | ACCGGT | 1 cut(s) | 1615 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 999 |
| Asp718I | GGTACC | 1 cut(s) | 13 |
| AspA2I | CCTAGG | 1 cut(s) | 3224 |
| AspLEI | GCGC | 3 cut(s) | 2404, 2416, 2548 |
| AspS9I | GGNCC | 8 cut(s) | 897, 1422, 1689, 2310, 2427, 3221, 3296, 4007 |
| AsuC2I | CCSGG | 3 cut(s) | 2837, 3041, 3379 |
| AsuHPI | GGTGA | 8 cut(s) | 1075, 1120, 1567, 1605, 1666, 3539, 3693, 4135 |
| AsuII | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| AvaI | CYCGRG | 1 cut(s) | 3393 |
| AvaII | GGWCC | 6 cut(s) | 897, 1422, 1689, 2427, 3221, 4007 |
| AvrII | CCTAGG | 1 cut(s) | 3224 |
| AxyI | CCTNAGG | 1 cut(s) | 9 |
| BaeGI | GKGCMC | 3 cut(s) | 499, 647, 2340 |
| BalI | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| BamHI | GGATCC | 2 cut(s) | 739, 2809 |
| BanI | GGYRCC | 3 cut(s) | 13, 2401, 2413 |
| BauI | CACGAG | 2 cut(s) | 492, 663 |
| BbsI | GAAGAC | 2 cut(s) | 1511, 1880 |
| Bbv12I | GWGCWC | 2 cut(s) | 647, 2484 |
| BbvI | GCAGC | 4 cut(s) | 316, 1177, 2515, 4144 |
| BccI | CCATC | 9 cut(s) | 220, 935, 1240, 1402, 1478, 2228, 2573, 2828, 3458 |
| BceAI | ACGGC | 8 cut(s) | 305, 416, 1744, 2453, 2491, 2570, 3736, 3854 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 380, 414 |
| BciT130I | CCWGG | 3 cut(s) | 744, 3433, 3981 |
| BciVI | GTATCC | 1 cut(s) | 993 |
| BclI | TGATCA | 4 cut(s) | 541, 1774, 3016, 3079 |
| BcnI | CCSGG | 3 cut(s) | 2837, 3041, 3379 |
| BcoDI | GTCTC | 3 cut(s) | 939, 1049, 4150 |
| BfoI | RGCGCY | 2 cut(s) | 2405, 2417 |
| BfrI | CTTAAG | 2 cut(s) | 734, 2963 |
| BfuAI | ACCTGC | 1 cut(s) | 2255 |
| BfuI | GTATCC | 1 cut(s) | 993 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2474 |
| BglII | AGATCT | 3 cut(s) | 802, 1276, 2200 |
| BisI | GCNGC | 8 cut(s) | 305, 354, 1191, 1682, 1915, 2504, 2658, 4158 |
| BlnI | CCTAGG | 1 cut(s) | 3224 |
| BlsI | GCNGC | 8 cut(s) | 306, 355, 1192, 1683, 1916, 2505, 2659, 4159 |
| BmcAI | AGTACT | 1 cut(s) | 2148 |
| Bme1390I | CCNGG | 6 cut(s) | 744, 2837, 3041, 3379, 3433, 3981 |
| Bme18I | GGWCC | 6 cut(s) | 897, 1422, 1689, 2427, 3221, 4007 |
| BmeT110I | CYCGRG | 1 cut(s) | 3393 |
| BmgT120I | GGNCC | 8 cut(s) | 897, 1422, 1689, 2310, 2427, 3221, 3296, 4007 |
| BmiI | GGNNCC | 9 cut(s) | 15, 741, 831, 2403, 2415, 2811, 3297, 3472, 3638 |
| BmrFI | CCNGG | 6 cut(s) | 744, 2837, 3041, 3379, 3433, 3981 |
| BpiI | GAAGAC | 2 cut(s) | 1511, 1880 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4130, 4162 |
| BpmI | CTGGAG | 2 cut(s) | 1926, 3415 |
| Bpu10I | CCTNAGC | 5 cut(s) | 729, 1132, 1426, 2075, 2786 |
| Bpu14I | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| BpuMI | CCSGG | 3 cut(s) | 2837, 3041, 3379 |
| Bsa29I | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| BsaAI | YACGTR | 2 cut(s) | 1850, 2801 |
| BsaHI | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| BsaWI | WCCGGW | 3 cut(s) | 1291, 1615, 2419 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 654, 1419, 1594, 4135 |
| Bse118I | RCCGGY | 5 cut(s) | 832, 1615, 1697, 1796, 2790 |
| Bse1I | ACTGG | 1 cut(s) | 1337 |
| Bse21I | CCTNAGG | 1 cut(s) | 9 |
| Bse3DI | GCAATG | 3 cut(s) | 555, 587, 1942 |
| BseAI | TCCGGA | 1 cut(s) | 1291 |
| BseBI | CCWGG | 3 cut(s) | 744, 3433, 3981 |
| BseCI | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 654, 1419, 1594, 4135 |
| BseMI | GCAATG | 3 cut(s) | 555, 587, 1942 |
| BseMII | CTCAG | 6 cut(s) | 23, 341, 1971, 2150, 2472, 3326 |
| BseNI | ACTGG | 1 cut(s) | 1337 |
| BseRI | GAGGAG | 2 cut(s) | 1198, 1388 |
| BseSI | GKGCMC | 3 cut(s) | 499, 647, 2340 |
| BseXI | GCAGC | 4 cut(s) | 316, 1177, 2515, 4144 |
| BsgI | GTGCAG | 2 cut(s) | 1193, 4062 |
| BshNI | GGYRCC | 3 cut(s) | 13, 2401, 2413 |
| BshTI | ACCGGT | 1 cut(s) | 1615 |
| BshVI | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| BsiHKAI | GWGCWC | 2 cut(s) | 647, 2484 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3393 |
| BslFI | GGGAC | 5 cut(s) | 112, 243, 389, 1875, 3023 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 654, 1419, 1594, 4135 |
| BsmAI | GTCTC | 3 cut(s) | 939, 1049, 4150 |
| BsmFI | GGGAC | 5 cut(s) | 112, 243, 389, 1875, 3023 |
| BsmI | GAATGC | 4 cut(s) | 600, 3447, 3677, 3896 |
| BsoBI | CYCGRG | 1 cut(s) | 3393 |
| Bsp119I | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| Bsp1286I | GDGCHC | 4 cut(s) | 499, 647, 2340, 2484 |
| Bsp13I | TCCGGA | 1 cut(s) | 1291 |
| Bsp1407I | TGTACA | 1 cut(s) | 3324 |
| Bsp19I | CCATGG | 1 cut(s) | 1113 |
| BspCNI | CTCAG | 6 cut(s) | 22, 340, 1972, 2149, 2471, 3325 |
| BspDI | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| BspEI | TCCGGA | 1 cut(s) | 1291 |
| BspHI | TCATGA | 3 cut(s) | 207, 882, 4047 |
| BspLI | GGNNCC | 9 cut(s) | 15, 741, 831, 2403, 2415, 2811, 3297, 3472, 3638 |
| BspMI | ACCTGC | 1 cut(s) | 2255 |
| BspPI | GGATC | 7 cut(s) | 407, 734, 747, 1758, 1872, 2804, 2817 |
| BspQI | GCTCTTC | 1 cut(s) | 1631 |
| BspT104I | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| BspT107I | GGYRCC | 3 cut(s) | 13, 2401, 2413 |
| BspTI | CTTAAG | 2 cut(s) | 734, 2963 |
| BsrBI | CCGCTC | 2 cut(s) | 1641, 2377 |
| BsrDI | GCAATG | 3 cut(s) | 555, 587, 1942 |
| BsrFI | RCCGGY | 5 cut(s) | 832, 1615, 1697, 1796, 2790 |
| BsrGI | TGTACA | 1 cut(s) | 3324 |
| BsrI | ACTGG | 1 cut(s) | 1337 |
| BssAI | RCCGGY | 5 cut(s) | 832, 1615, 1697, 1796, 2790 |
| BssNI | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| BssSI | CACGAG | 2 cut(s) | 492, 663 |
| BssT1I | CCWWGG | 8 cut(s) | 1074, 1086, 1113, 1500, 2885, 3224, 3690, 3891 |
| Bst2BI | CACGAG | 2 cut(s) | 492, 663 |
| Bst2UI | CCWGG | 3 cut(s) | 744, 3433, 3981 |
| Bst4CI | ACNGT | 8 cut(s) | 350, 1147, 1651, 1693, 1826, 2900, 3705, 4135 |
| Bst6I | CTCTTC | 5 cut(s) | 43, 279, 1631, 1854, 3602 |
| BstACI | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| BstAFI | CTTAAG | 2 cut(s) | 734, 2963 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 362, 407 |
| BstAUI | TGTACA | 1 cut(s) | 3324 |
| BstBAI | YACGTR | 2 cut(s) | 1850, 2801 |
| BstBI | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| BstC8I | GCNNGC | 2 cut(s) | 1919, 3986 |
| BstDSI | CCRYGG | 3 cut(s) | 1113, 2469, 2814 |
| BstH2I | RGCGCY | 2 cut(s) | 2405, 2417 |
| BstHHI | GCGC | 3 cut(s) | 2404, 2416, 2548 |
| BstMAI | GTCTC | 3 cut(s) | 939, 1049, 4150 |
| BstNI | CCWGG | 3 cut(s) | 744, 3433, 3981 |
| BstNSI | RCATGY | 8 cut(s) | 586, 1759, 1890, 1921, 1966, 2052, 2264, 3260 |
| BstSCI | CCNGG | 6 cut(s) | 742, 2835, 3039, 3377, 3431, 3979 |
| BstSLI | GKGCMC | 3 cut(s) | 499, 647, 2340 |
| BstV1I | GCAGC | 4 cut(s) | 316, 1177, 2515, 4144 |
| BstV2I | GAAGAC | 2 cut(s) | 1511, 1880 |
| BstX2I | RGATCY | 5 cut(s) | 739, 802, 1276, 2200, 2809 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 868, 2424, 3560 |
| BstYI | RGATCY | 5 cut(s) | 739, 802, 1276, 2200, 2809 |
| Bsu15I | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| Bsu36I | CCTNAGG | 1 cut(s) | 9 |
| BsuI | GTATCC | 1 cut(s) | 993 |
| BsuTUI | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| BtgI | CCRYGG | 3 cut(s) | 1113, 2469, 2814 |
| BtgZI | GCGATG | 1 cut(s) | 989 |
| BtsIMutI | CAGTG | 2 cut(s) | 2646, 2905 |
| BveI | ACCTGC | 1 cut(s) | 2255 |
| Cac8I | GCNNGC | 2 cut(s) | 1919, 3986 |
| CaiI | CAGNNNCTG | 2 cut(s) | 362, 407 |
| CciI | TCATGA | 3 cut(s) | 207, 882, 4047 |
| CfoI | GCGC | 3 cut(s) | 2404, 2416, 2548 |
| Cfr10I | RCCGGY | 5 cut(s) | 832, 1615, 1697, 1796, 2790 |
| Cfr13I | GGNCC | 8 cut(s) | 897, 1422, 1689, 2310, 2427, 3221, 3296, 4007 |
| ClaI | ATCGAT | 3 cut(s) | 240, 1716, 4096 |
| CseI | GACGC | 2 cut(s) | 2198, 2462 |
| Csp6I | GTAC | 8 cut(s) | 14, 774, 1966, 2147, 2798, 3183, 3325, 3718 |
| CspAI | ACCGGT | 1 cut(s) | 1615 |
| CviQI | GTAC | 8 cut(s) | 14, 774, 1966, 2147, 2798, 3183, 3325, 3718 |
| DinI | GGCGCC | 2 cut(s) | 2403, 2415 |
| DraIII | CACNNNGTG | 2 cut(s) | 1708, 4135 |
| EaeI | YGGCCR | 5 cut(s) | 1410, 1699, 2152, 2817, 3937 |
| Eam1104I | CTCTTC | 5 cut(s) | 43, 279, 1631, 1854, 3602 |
| EarI | CTCTTC | 5 cut(s) | 43, 279, 1631, 1854, 3602 |
| EciI | GGCGGA | 1 cut(s) | 851 |
| Eco130I | CCWWGG | 8 cut(s) | 1074, 1086, 1113, 1500, 2885, 3224, 3690, 3891 |
| Eco147I | AGGCCT | 1 cut(s) | 7 |
| Eco47I | GGWCC | 6 cut(s) | 897, 1422, 1689, 2427, 3221, 4007 |
| Eco81I | CCTNAGG | 1 cut(s) | 9 |
| Eco88I | CYCGRG | 1 cut(s) | 3393 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3221, 3296, 4007 |
| EcoRII | CCWGG | 3 cut(s) | 742, 3431, 3979 |
| EcoT14I | CCWWGG | 8 cut(s) | 1074, 1086, 1113, 1500, 2885, 3224, 3690, 3891 |
| EcoT22I | ATGCAT | 2 cut(s) | 1964, 2050 |
| EgeI | GGCGCC | 2 cut(s) | 2403, 2415 |
| EheI | GGCGCC | 2 cut(s) | 2403, 2415 |
| ErhI | CCWWGG | 8 cut(s) | 1074, 1086, 1113, 1500, 2885, 3224, 3690, 3891 |
| FaqI | GGGAC | 5 cut(s) | 112, 243, 389, 1875, 3023 |
| FbaI | TGATCA | 4 cut(s) | 541, 1774, 3016, 3079 |
| FblI | GTMKAC | 1 cut(s) | 912 |
| Fnu4HI | GCNGC | 8 cut(s) | 305, 354, 1191, 1682, 1915, 2504, 2658, 4158 |
| Fsp4HI | GCNGC | 8 cut(s) | 305, 354, 1191, 1682, 1915, 2504, 2658, 4158 |
| FspI | TGCGCA | 1 cut(s) | 2547 |
| GlaI | GCGC | 3 cut(s) | 2403, 2415, 2547 |
| GluI | GCNGC | 8 cut(s) | 305, 354, 1191, 1682, 1915, 2504, 2658, 4158 |
| GsuI | CTGGAG | 2 cut(s) | 1926, 3415 |
| HaeII | RGCGCY | 2 cut(s) | 2405, 2417 |
| HgaI | GACGC | 2 cut(s) | 2198, 2462 |
| HhaI | GCGC | 3 cut(s) | 2404, 2416, 2548 |
| Hin1I | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| Hin6I | GCGC | 3 cut(s) | 2402, 2414, 2546 |
| HinP1I | GCGC | 3 cut(s) | 2402, 2414, 2546 |
| HincII | GTYRAC | 4 cut(s) | 185, 1511, 2394, 2676 |
| HindII | GTYRAC | 4 cut(s) | 185, 1511, 2394, 2676 |
| HindIII | AAGCTT | 3 cut(s) | 168, 731, 2248 |
| HphI | GGTGA | 8 cut(s) | 1075, 1120, 1567, 1605, 1666, 3539, 3693, 4135 |
| Hpy99I | CGWCG | 2 cut(s) | 1518, 2280 |
| HpyCH4III | ACNGT | 8 cut(s) | 350, 1147, 1651, 1693, 1826, 2900, 3705, 4135 |
| HpyCH4IV | ACGT | 8 cut(s) | 1331, 1516, 1849, 1880, 1949, 2769, 2800, 3991 |
| HpySE526I | ACGT | 8 cut(s) | 1331, 1516, 1849, 1880, 1949, 2769, 2800, 3991 |
| Hsp92I | GRCGYC | 4 cut(s) | 1516, 2402, 2414, 2454 |
| HspAI | GCGC | 3 cut(s) | 2402, 2414, 2546 |
| KasI | GGCGCC | 2 cut(s) | 2401, 2413 |
| Kpn2I | TCCGGA | 1 cut(s) | 1291 |
| KpnI | GGTACC | 1 cut(s) | 17 |
| Ksp22I | TGATCA | 4 cut(s) | 541, 1774, 3016, 3079 |
| LguI | GCTCTTC | 1 cut(s) | 1631 |
| LmnI | GCTCC | 6 cut(s) | 1366, 1487, 1945, 3571, 3636, 4070 |
| Lsp1109I | GCAGC | 4 cut(s) | 316, 1177, 2515, 4144 |
| MaeII | ACGT | 8 cut(s) | 1331, 1516, 1849, 1880, 1949, 2769, 2800, 3991 |
| MbiI | CCGCTC | 2 cut(s) | 1641, 2377 |
| MfeI | CAATTG | 1 cut(s) | 3492 |
| MflI | RGATCY | 5 cut(s) | 739, 802, 1276, 2200, 2809 |
| MhlI | GDGCHC | 4 cut(s) | 499, 647, 2340, 2484 |
| MlsI | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| MluNI | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| Mly113I | GGCGCC | 2 cut(s) | 2402, 2414 |
| MlyI | GAGTC | 2 cut(s) | 1587, 2798 |
| MmeI | TCCRAC | 2 cut(s) | 1400, 2742 |
| Mox20I | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| Mph1103I | ATGCAT | 2 cut(s) | 1964, 2050 |
| MroI | TCCGGA | 1 cut(s) | 1291 |
| MroXI | GAANNNNTTC | 1 cut(s) | 999 |
| MscI | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| MseI | TTAA | 7 cut(s) | 152, 735, 2106, 2964, 3783, 3957, 4100 |
| MslI | CAYNNNNRTG | 6 cut(s) | 264, 492, 824, 1652, 2231, 2349 |
| Msp20I | TGGCCA | 3 cut(s) | 1412, 2819, 3939 |
| MspCI | CTTAAG | 2 cut(s) | 734, 2963 |
| MspR9I | CCNGG | 6 cut(s) | 744, 2837, 3041, 3379, 3433, 3981 |
| MunI | CAATTG | 1 cut(s) | 3492 |
| Mva1269I | GAATGC | 4 cut(s) | 600, 3447, 3677, 3896 |
| MvaI | CCWGG | 3 cut(s) | 744, 3433, 3981 |
| NarI | GGCGCC | 2 cut(s) | 2402, 2414 |
| NciI | CCSGG | 3 cut(s) | 2837, 3041, 3379 |
| NcoI | CCATGG | 1 cut(s) | 1113 |
| NlaIV | GGNNCC | 9 cut(s) | 15, 741, 831, 2403, 2415, 2811, 3297, 3472, 3638 |
| NmeAIII | GCCGAG | 8 cut(s) | 322, 391, 415, 1219, 2130, 2287, 2380, 2721 |
| NsbI | TGCGCA | 1 cut(s) | 2547 |
| NsiI | ATGCAT | 2 cut(s) | 1964, 2050 |
| NspI | RCATGY | 8 cut(s) | 586, 1759, 1890, 1921, 1966, 2052, 2264, 3260 |
| NspV | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| OliI | CACNNNNGTG | 2 cut(s) | 1652, 2231 |
| PaeI | GCATGC | 1 cut(s) | 1921 |
| PaeR7I | CTCGAG | 1 cut(s) | 3393 |
| PagI | TCATGA | 3 cut(s) | 207, 882, 4047 |
| PceI | AGGCCT | 1 cut(s) | 7 |
| PciI | ACATGT | 2 cut(s) | 1886, 3256 |
| PciSI | GCTCTTC | 1 cut(s) | 1631 |
| PctI | GAATGC | 4 cut(s) | 600, 3447, 3677, 3896 |
| PdmI | GAANNNNTTC | 1 cut(s) | 999 |
| PfeI | GAWTC | 9 cut(s) | 757, 1098, 1598, 1644, 3141, 3389, 3519, 3863, 3913 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1419, 4135 |
| PfoI | TCCNGGA | 2 cut(s) | 2835, 3039 |
| PinAI | ACCGGT | 1 cut(s) | 1615 |
| PkrI | GCNGC | 8 cut(s) | 306, 355, 1192, 1683, 1916, 2505, 2659, 4159 |
| PleI | GAGTC | 2 cut(s) | 1586, 2798 |
| PluTI | GGCGCC | 2 cut(s) | 2405, 2417 |
| PpsI | GAGTC | 2 cut(s) | 1586, 2798 |
| Ppu21I | YACGTR | 2 cut(s) | 1850, 2801 |
| PpuMI | RGGWCCY | 2 cut(s) | 3221, 4007 |
| PscI | ACATGT | 2 cut(s) | 1886, 3256 |
| Psp1406I | AACGTT | 3 cut(s) | 1331, 1880, 2769 |
| Psp5II | RGGWCCY | 2 cut(s) | 3221, 4007 |
| Psp6I | CCWGG | 3 cut(s) | 742, 3431, 3979 |
| PspGI | CCWGG | 3 cut(s) | 742, 3431, 3979 |
| PspN4I | GGNNCC | 9 cut(s) | 15, 741, 831, 2403, 2415, 2811, 3297, 3472, 3638 |
| PspPI | GGNCC | 8 cut(s) | 897, 1422, 1689, 2310, 2427, 3221, 3296, 4007 |
| PspPPI | RGGWCCY | 2 cut(s) | 3221, 4007 |
| PstNI | CAGNNNCTG | 2 cut(s) | 362, 407 |
| PsuI | RGATCY | 5 cut(s) | 739, 802, 1276, 2200, 2809 |
| RsaI | GTAC | 8 cut(s) | 15, 775, 1967, 2148, 2799, 3184, 3326, 3719 |
| RsaNI | GTAC | 8 cut(s) | 14, 774, 1966, 2147, 2798, 3183, 3325, 3718 |
| RseI | CAYNNNNRTG | 6 cut(s) | 264, 492, 824, 1652, 2231, 2349 |
| SapI | GCTCTTC | 1 cut(s) | 1631 |
| SaqAI | TTAA | 7 cut(s) | 152, 735, 2106, 2964, 3783, 3957, 4100 |
| SatI | GCNGC | 8 cut(s) | 305, 354, 1191, 1682, 1915, 2504, 2658, 4158 |
| Sau96I | GGNCC | 8 cut(s) | 897, 1422, 1689, 2310, 2427, 3221, 3296, 4007 |
| ScaI | AGTACT | 1 cut(s) | 2148 |
| SchI | GAGTC | 2 cut(s) | 1587, 2798 |
| ScrFI | CCNGG | 6 cut(s) | 744, 2837, 3041, 3379, 3433, 3981 |
| SduI | GDGCHC | 4 cut(s) | 499, 647, 2340, 2484 |
| SfoI | GGCGCC | 2 cut(s) | 2403, 2415 |
| Sfr274I | CTCGAG | 1 cut(s) | 3393 |
| SfuI | TTCGAA | 3 cut(s) | 933, 2245, 3916 |
| SinI | GGWCC | 6 cut(s) | 897, 1422, 1689, 2427, 3221, 4007 |
| SlaI | CTCGAG | 1 cut(s) | 3393 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 264, 492, 824, 1652, 2231, 2349 |
| SphI | GCATGC | 1 cut(s) | 1921 |
| SseBI | AGGCCT | 1 cut(s) | 7 |
| SspDI | GGCGCC | 2 cut(s) | 2401, 2413 |
| SspI | AATATT | 2 cut(s) | 3267, 3424 |
| StuI | AGGCCT | 1 cut(s) | 7 |
| StyD4I | CCNGG | 6 cut(s) | 742, 2835, 3039, 3377, 3431, 3979 |
| StyI | CCWWGG | 8 cut(s) | 1074, 1086, 1113, 1500, 2885, 3224, 3690, 3891 |
| TaaI | ACNGT | 8 cut(s) | 350, 1147, 1651, 1693, 1826, 2900, 3705, 4135 |
| TaiI | ACGT | 8 cut(s) | 1334, 1519, 1852, 1883, 1952, 2772, 2803, 3994 |
| TatI | WGTACW | 3 cut(s) | 2146, 3182, 3324 |
| TauI | GCSGC | 4 cut(s) | 356, 1684, 1917, 2660 |
| TfiI | GAWTC | 9 cut(s) | 757, 1098, 1598, 1644, 3141, 3389, 3519, 3863, 3913 |
| Tru1I | TTAA | 7 cut(s) | 152, 735, 2106, 2964, 3783, 3957, 4100 |
| Tru9I | TTAA | 7 cut(s) | 152, 735, 2106, 2964, 3783, 3957, 4100 |
| TscAI | CASTG | 2 cut(s) | 2653, 2905 |
| TseI | GCWGC | 4 cut(s) | 304, 1190, 2503, 4157 |
| TspRI | CASTG | 2 cut(s) | 2653, 2905 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1419, 4135 |
| Vha464I | CTTAAG | 2 cut(s) | 734, 2963 |
| VneI | GTGCAC | 1 cut(s) | 643 |
| VpaK11BI | GGWCC | 6 cut(s) | 897, 1422, 1689, 2427, 3221, 4007 |
| XapI | RAATTY | 7 cut(s) | 626, 855, 1470, 2932, 3214, 3449, 4076 |
| XbaI | TCTAGA | 2 cut(s) | 805, 3962 |
| XceI | RCATGY | 8 cut(s) | 586, 1759, 1890, 1921, 1966, 2052, 2264, 3260 |
| XhoI | CTCGAG | 1 cut(s) | 3393 |
| XmaJI | CCTAGG | 1 cut(s) | 3224 |
| XmiI | GTMKAC | 1 cut(s) | 912 |
| XmnI | GAANNNNTTC | 1 cut(s) | 999 |
| ZraI | GACGTC | 1 cut(s) | 1517 |
| ZrmI | AGTACT | 1 cut(s) | 2148 |
| Zsp2I | ATGCAT | 2 cut(s) | 1964, 2050 |