RNA splicing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 89, 950 |
| Acc36I | ACCTGC | 2 cut(s) | 142, 1003 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 810 |
| AccIII | TCCGGA | 1 cut(s) | 1031 |
| AciI | CCGC | 2 cut(s) | 537, 821 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 1 cut(s) | 486 |
| AcvI | CACGTG | 1 cut(s) | 849 |
| AdeI | CACNNNGTG | 1 cut(s) | 849 |
| AfaI | GTAC | 2 cut(s) | 408, 1071 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 536, 810, 871 |
| AflIII | ACRYGT | 1 cut(s) | 276 |
| AgeI | ACCGGT | 1 cut(s) | 1088 |
| AgsI | TTSAA | 3 cut(s) | 95, 551, 694 |
| AjiI | CACGTC | 1 cut(s) | 277 |
| AleI | CACNNNNGTG | 2 cut(s) | 1043, 1077 |
| AluBI | AGCT | 4 cut(s) | 446, 744, 899, 1066 |
| AluI | AGCT | 4 cut(s) | 446, 744, 899, 1066 |
| Alw21I | GWGCWC | 2 cut(s) | 456, 795 |
| Alw26I | GTCTC | 1 cut(s) | 600 |
| Alw44I | GTGCAC | 1 cut(s) | 452 |
| Ama87I | CYCGRG | 1 cut(s) | 566 |
| Aor13HI | TCCGGA | 1 cut(s) | 1031 |
| AoxI | GGCC | 3 cut(s) | 99, 238, 753 |
| ApaLI | GTGCAC | 1 cut(s) | 452 |
| ApeKI | GCWGC | 2 cut(s) | 560, 652 |
| ApoI | RAATTY | 1 cut(s) | 486 |
| AseI | ATTAAT | 2 cut(s) | 24, 321 |
| AsiGI | ACCGGT | 1 cut(s) | 1088 |
| AspS9I | GGNCC | 3 cut(s) | 361, 754, 813 |
| AsuHPI | GGTGA | 4 cut(s) | 77, 551, 996, 1057 |
| AvaI | CYCGRG | 1 cut(s) | 566 |
| AvaII | GGWCC | 2 cut(s) | 361, 813 |
| BaeGI | GKGCMC | 2 cut(s) | 456, 531 |
| BauI | CACGAG | 1 cut(s) | 1077 |
| BbrPI | CACGTG | 1 cut(s) | 849 |
| Bbv12I | GWGCWC | 2 cut(s) | 456, 795 |
| BbvI | GCAGC | 2 cut(s) | 547, 664 |
| BccI | CCATC | 6 cut(s) | 74, 226, 302, 649, 804, 895 |
| BceAI | ACGGC | 5 cut(s) | 225, 472, 517, 713, 768 |
| BcoDI | GTCTC | 1 cut(s) | 600 |
| BfaI | CTAG | 4 cut(s) | 236, 684, 725, 741 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| BfuAI | ACCTGC | 2 cut(s) | 142, 1003 |
| BisI | GCNGC | 2 cut(s) | 561, 653 |
| BlsI | GCNGC | 2 cut(s) | 562, 654 |
| Bme18I | GGWCC | 2 cut(s) | 361, 813 |
| BmeT110I | CYCGRG | 1 cut(s) | 566 |
| BmgBI | CACGTC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 3 cut(s) | 361, 754, 813 |
| BmiI | GGNNCC | 1 cut(s) | 880 |
| BmsI | GCATC | 4 cut(s) | 59, 421, 865, 870 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 199, 231 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 458, 686 |
| BsaAI | YACGTR | 1 cut(s) | 849 |
| BsaJI | CCNNGG | 5 cut(s) | 61, 123, 297, 499, 816 |
| BsaWI | WCCGGW | 2 cut(s) | 1031, 1088 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1026, 1056 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 536, 810, 871 |
| Bse118I | RCCGGY | 1 cut(s) | 1088 |
| Bse3DI | GCAATG | 1 cut(s) | 221 |
| BseAI | TCCGGA | 1 cut(s) | 1031 |
| BseDI | CCNNGG | 5 cut(s) | 61, 123, 297, 499, 816 |
| BseGI | GGATG | 3 cut(s) | 145, 815, 861 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 536, 810, 871 |
| BseMI | GCAATG | 1 cut(s) | 221 |
| BseRI | GAGGAG | 1 cut(s) | 887 |
| BseSI | GKGCMC | 2 cut(s) | 456, 531 |
| BseXI | GCAGC | 2 cut(s) | 547, 664 |
| BsgI | GTGCAG | 3 cut(s) | 170, 671, 1031 |
| Bsh1285I | CGRYCG | 2 cut(s) | 106, 558 |
| BshFI | GGCC | 3 cut(s) | 101, 240, 755 |
| BshTI | ACCGGT | 1 cut(s) | 1088 |
| BsiEI | CGRYCG | 2 cut(s) | 106, 558 |
| BsiHKAI | GWGCWC | 2 cut(s) | 456, 795 |
| BsiHKCI | CYCGRG | 1 cut(s) | 566 |
| BsiSI | CCGG | 2 cut(s) | 1032, 1089 |
| BslFI | GGGAC | 2 cut(s) | 326, 825 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 536, 810, 871 |
| BsmAI | GTCTC | 1 cut(s) | 600 |
| BsmFI | GGGAC | 2 cut(s) | 326, 825 |
| BsnI | GGCC | 3 cut(s) | 101, 240, 755 |
| BsoBI | CYCGRG | 1 cut(s) | 566 |
| Bsp1286I | GDGCHC | 3 cut(s) | 456, 531, 795 |
| Bsp13I | TCCGGA | 1 cut(s) | 1031 |
| Bsp1407I | TGTACA | 1 cut(s) | 1069 |
| Bsp143I | GATC | 3 cut(s) | 103, 415, 715 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspACI | CCGC | 2 cut(s) | 537, 821 |
| BspANI | GGCC | 3 cut(s) | 101, 240, 755 |
| BspEI | TCCGGA | 1 cut(s) | 1031 |
| BspHI | TCATGA | 1 cut(s) | 249 |
| BspLI | GGNNCC | 1 cut(s) | 880 |
| BspMI | ACCTGC | 2 cut(s) | 142, 1003 |
| BsrDI | GCAATG | 1 cut(s) | 221 |
| BsrFI | RCCGGY | 1 cut(s) | 1088 |
| BsrGI | TGTACA | 1 cut(s) | 1069 |
| BssAI | RCCGGY | 1 cut(s) | 1088 |
| BssECI | CCNNGG | 5 cut(s) | 61, 123, 297, 499, 816 |
| BssMI | GATC | 3 cut(s) | 103, 415, 715 |
| BssSI | CACGAG | 1 cut(s) | 1077 |
| BssT1I | CCWWGG | 4 cut(s) | 61, 123, 297, 816 |
| Bst2BI | CACGAG | 1 cut(s) | 1077 |
| Bst4CI | ACNGT | 3 cut(s) | 526, 556, 1042 |
| BstAUI | TGTACA | 1 cut(s) | 1069 |
| BstBAI | YACGTR | 1 cut(s) | 849 |
| BstC8I | GCNNGC | 2 cut(s) | 506, 854 |
| BstDEI | CTNAG | 1 cut(s) | 190 |
| BstDSI | CCRYGG | 2 cut(s) | 297, 499 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 869 |
| BstF5I | GGATG | 3 cut(s) | 145, 815, 861 |
| BstKTI | GATC | 3 cut(s) | 106, 418, 718 |
| BstMAI | GTCTC | 1 cut(s) | 600 |
| BstMBI | GATC | 3 cut(s) | 103, 415, 715 |
| BstMCI | CGRYCG | 2 cut(s) | 106, 558 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 858 |
| BstNSI | RCATGY | 2 cut(s) | 508, 856 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BstSLI | GKGCMC | 2 cut(s) | 456, 531 |
| BstV1I | GCAGC | 2 cut(s) | 547, 664 |
| BsuRI | GGCC | 3 cut(s) | 101, 240, 755 |
| BtgI | CCRYGG | 2 cut(s) | 297, 499 |
| BtgZI | GCGATG | 1 cut(s) | 842 |
| BtrI | CACGTC | 1 cut(s) | 277 |
| BtsCI | GGATG | 3 cut(s) | 145, 815, 861 |
| BveI | ACCTGC | 2 cut(s) | 142, 1003 |
| Cac8I | GCNNGC | 2 cut(s) | 506, 854 |
| CciI | TCATGA | 1 cut(s) | 249 |
| Cfr10I | RCCGGY | 1 cut(s) | 1088 |
| Cfr13I | GGNCC | 3 cut(s) | 361, 754, 813 |
| Csp6I | GTAC | 2 cut(s) | 407, 1070 |
| CspAI | ACCGGT | 1 cut(s) | 1088 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 906, 941 |
| CviAII | CATG | 7 cut(s) | 31, 212, 250, 298, 505, 853, 883 |
| CviQI | GTAC | 2 cut(s) | 407, 1070 |
| DdeI | CTNAG | 1 cut(s) | 190 |
| DpnI | GATC | 3 cut(s) | 105, 417, 717 |
| DpnII | GATC | 3 cut(s) | 103, 415, 715 |
| DraIII | CACNNNGTG | 1 cut(s) | 849 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| EciI | GGCGGA | 1 cut(s) | 836 |
| Eco130I | CCWWGG | 4 cut(s) | 61, 123, 297, 816 |
| Eco32I | GATATC | 1 cut(s) | 826 |
| Eco47I | GGWCC | 2 cut(s) | 361, 813 |
| Eco72I | CACGTG | 1 cut(s) | 849 |
| Eco88I | CYCGRG | 1 cut(s) | 566 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 869 |
| EcoRI | GAATTC | 1 cut(s) | 486 |
| EcoRV | GATATC | 1 cut(s) | 826 |
| EcoT14I | CCWWGG | 4 cut(s) | 61, 123, 297, 816 |
| EcoT22I | ATGCAT | 2 cut(s) | 52, 858 |
| ErhI | CCWWGG | 4 cut(s) | 61, 123, 297, 816 |
| FaeI | CATG | 7 cut(s) | 34, 215, 253, 301, 508, 856, 886 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 420, 452 |
| FaqI | GGGAC | 2 cut(s) | 326, 825 |
| FatI | CATG | 7 cut(s) | 30, 211, 249, 297, 504, 852, 882 |
| Fnu4HI | GCNGC | 2 cut(s) | 561, 653 |
| FokI | GGATG | 3 cut(s) | 152, 822, 848 |
| Fsp4HI | GCNGC | 2 cut(s) | 561, 653 |
| FspBI | CTAG | 4 cut(s) | 236, 684, 725, 741 |
| GluI | GCNGC | 2 cut(s) | 561, 653 |
| HaeIII | GGCC | 3 cut(s) | 101, 240, 755 |
| HapII | CCGG | 2 cut(s) | 1032, 1089 |
| Hin1II | CATG | 7 cut(s) | 34, 215, 253, 301, 508, 856, 886 |
| HinfI | GANTC | 5 cut(s) | 129, 203, 392, 569, 1035 |
| HpaII | CCGG | 2 cut(s) | 1032, 1089 |
| HphI | GGTGA | 4 cut(s) | 77, 551, 996, 1057 |
| Hpy166II | GTNNAC | 3 cut(s) | 282, 454, 1072 |
| Hpy188I | TCNGA | 3 cut(s) | 337, 514, 720 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 1032 |
| Hpy8I | GTNNAC | 3 cut(s) | 282, 454, 1072 |
| Hpy99I | CGWCG | 1 cut(s) | 909 |
| HpyCH4III | ACNGT | 3 cut(s) | 526, 556, 1042 |
| HpyCH4IV | ACGT | 3 cut(s) | 276, 848, 904 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 858 |
| HpyF3I | CTNAG | 1 cut(s) | 190 |
| HpySE526I | ACGT | 3 cut(s) | 276, 848, 904 |
| Hsp92II | CATG | 7 cut(s) | 34, 215, 253, 301, 508, 856, 886 |
| Kpn2I | TCCGGA | 1 cut(s) | 1031 |
| Kzo9I | GATC | 3 cut(s) | 103, 415, 715 |
| LmnI | GCTCC | 3 cut(s) | 220, 464, 790 |
| LpnPI | CCDG | 6 cut(s) | 137, 389, 573, 998, 1045, 1102 |
| Lsp1109I | GCAGC | 2 cut(s) | 547, 664 |
| LweI | GCATC | 4 cut(s) | 59, 421, 865, 870 |
| MaeI | CTAG | 4 cut(s) | 236, 684, 725, 741 |
| MaeII | ACGT | 3 cut(s) | 276, 848, 904 |
| MaeIII | GTNAC | 5 cut(s) | 633, 686, 1002, 1036, 1084 |
| MalI | GATC | 3 cut(s) | 105, 417, 717 |
| MboI | GATC | 3 cut(s) | 103, 415, 715 |
| MboII | GAAGA | 4 cut(s) | 440, 725, 1060, 1067 |
| MfeI | CAATTG | 2 cut(s) | 95, 645 |
| MhlI | GDGCHC | 3 cut(s) | 456, 531, 795 |
| MluCI | AATT | 8 cut(s) | 90, 95, 322, 471, 486, 606, 645, 953 |
| MlyI | GAGTC | 3 cut(s) | 138, 578, 1044 |
| Mph1103I | ATGCAT | 2 cut(s) | 52, 858 |
| MroI | TCCGGA | 1 cut(s) | 1031 |
| MslI | CAYNNNNRTG | 3 cut(s) | 851, 1043, 1077 |
| MspI | CCGG | 2 cut(s) | 1032, 1089 |
| MunI | CAATTG | 2 cut(s) | 95, 645 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 858 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeII | GATC | 3 cut(s) | 103, 415, 715 |
| NlaIII | CATG | 7 cut(s) | 34, 215, 253, 301, 508, 856, 886 |
| NlaIV | GGNNCC | 1 cut(s) | 880 |
| NmuCI | GTSAC | 4 cut(s) | 686, 1002, 1036, 1084 |
| NsiI | ATGCAT | 2 cut(s) | 52, 858 |
| NspI | RCATGY | 2 cut(s) | 508, 856 |
| OliI | CACNNNNGTG | 2 cut(s) | 1043, 1077 |
| PaeI | GCATGC | 2 cut(s) | 508, 856 |
| PaeR7I | CTCGAG | 1 cut(s) | 566 |
| PagI | TCATGA | 1 cut(s) | 249 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 564 |
| PfeI | GAWTC | 2 cut(s) | 203, 392 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 810 |
| PinAI | ACCGGT | 1 cut(s) | 1088 |
| PkrI | GCNGC | 2 cut(s) | 562, 654 |
| Ple19I | CGATCG | 1 cut(s) | 106 |
| PleI | GAGTC | 3 cut(s) | 137, 577, 1043 |
| PmaCI | CACGTG | 1 cut(s) | 849 |
| PmlI | CACGTG | 1 cut(s) | 849 |
| PpsI | GAGTC | 3 cut(s) | 137, 577, 1043 |
| Ppu21I | YACGTR | 1 cut(s) | 849 |
| PshBI | ATTAAT | 2 cut(s) | 24, 321 |
| PsiI | TTATAA | 2 cut(s) | 89, 950 |
| PspCI | CACGTG | 1 cut(s) | 849 |
| PspN4I | GGNNCC | 1 cut(s) | 880 |
| PspPI | GGNCC | 3 cut(s) | 361, 754, 813 |
| PspXI | VCTCGAGB | 1 cut(s) | 566 |
| PvuI | CGATCG | 1 cut(s) | 106 |
| RsaI | GTAC | 2 cut(s) | 408, 1071 |
| RsaNI | GTAC | 2 cut(s) | 407, 1070 |
| RseI | CAYNNNNRTG | 3 cut(s) | 851, 1043, 1077 |
| SatI | GCNGC | 2 cut(s) | 561, 653 |
| Sau3AI | GATC | 3 cut(s) | 103, 415, 715 |
| Sau96I | GGNCC | 3 cut(s) | 361, 754, 813 |
| SchI | GAGTC | 3 cut(s) | 138, 578, 1044 |
| SduI | GDGCHC | 3 cut(s) | 456, 531, 795 |
| SfaNI | GCATC | 4 cut(s) | 59, 421, 865, 870 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| Sfr274I | CTCGAG | 1 cut(s) | 566 |
| SinI | GGWCC | 2 cut(s) | 361, 813 |
| SlaI | CTCGAG | 1 cut(s) | 566 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 851, 1043, 1077 |
| SmlI | CTYRAG | 4 cut(s) | 134, 437, 566, 665 |
| SmoI | CTYRAG | 4 cut(s) | 134, 437, 566, 665 |
| SphI | GCATGC | 2 cut(s) | 508, 856 |
| Sse9I | AATT | 8 cut(s) | 90, 95, 322, 471, 486, 606, 645, 953 |
| SsiI | CCGC | 2 cut(s) | 537, 821 |
| SspMI | CTAG | 4 cut(s) | 236, 684, 725, 741 |
| StyI | CCWWGG | 4 cut(s) | 61, 123, 297, 816 |
| TaaI | ACNGT | 3 cut(s) | 526, 556, 1042 |
| TaiI | ACGT | 3 cut(s) | 279, 851, 907 |
| TaqI | TCGA | 3 cut(s) | 206, 414, 567 |
| TasI | AATT | 8 cut(s) | 90, 95, 322, 471, 486, 606, 645, 953 |
| TatI | WGTACW | 1 cut(s) | 1069 |
| TfiI | GAWTC | 2 cut(s) | 203, 392 |
| TseFI | GTSAC | 4 cut(s) | 686, 1002, 1036, 1084 |
| TseI | GCWGC | 2 cut(s) | 560, 652 |
| Tsp45I | GTSAC | 4 cut(s) | 686, 1002, 1036, 1084 |
| TspDTI | ATGAA | 5 cut(s) | 71, 238, 266, 437, 1068 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 810 |
| VneI | GTGCAC | 1 cut(s) | 452 |
| VpaK11BI | GGWCC | 2 cut(s) | 361, 813 |
| VspI | ATTAAT | 2 cut(s) | 24, 321 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 869 |
| XapI | RAATTY | 1 cut(s) | 486 |
| XceI | RCATGY | 2 cut(s) | 508, 856 |
| XhoI | CTCGAG | 1 cut(s) | 566 |
| XspI | CTAG | 4 cut(s) | 236, 684, 725, 741 |
| Zsp2I | ATGCAT | 2 cut(s) | 52, 858 |