transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 22 - 115 | 3.1e-18 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 325 |
| AcsI | RAATTY | 1 cut(s) | 199 |
| AdeI | CACNNNGTG | 1 cut(s) | 325 |
| AfaI | GTAC | 2 cut(s) | 308, 338 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AgsI | TTSAA | 7 cut(s) | 37, 158, 199, 290, 442, 545, 577 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 4 cut(s) | 245, 521, 541, 613 |
| AluI | AGCT | 4 cut(s) | 245, 521, 541, 613 |
| AoxI | GGCC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 1 cut(s) | 264 |
| ApoI | RAATTY | 1 cut(s) | 199 |
| AspS9I | GGNCC | 2 cut(s) | 89, 561 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| AxyI | CCTNAGG | 1 cut(s) | 352 |
| BanII | GRGCYC | 1 cut(s) | 413 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 4 cut(s) | 106, 251, 348, 572 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BciVI | GTATCC | 1 cut(s) | 154 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BfuI | GTATCC | 1 cut(s) | 154 |
| BisI | GCNGC | 1 cut(s) | 265 |
| BlsI | GCNGC | 1 cut(s) | 266 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 2 cut(s) | 89, 561 |
| BmiI | GGNNCC | 2 cut(s) | 90, 235 |
| BmsI | GCATC | 3 cut(s) | 18, 436, 583 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| Bsa29I | ATCGAT | 1 cut(s) | 78 |
| BsaAI | YACGTR | 1 cut(s) | 142 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse21I | CCTNAGG | 1 cut(s) | 352 |
| BseCI | ATCGAT | 1 cut(s) | 78 |
| BseGI | GGATG | 3 cut(s) | 98, 340, 598 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMII | CTCAG | 1 cut(s) | 366 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BshFI | GGCC | 1 cut(s) | 563 |
| BshVI | ATCGAT | 1 cut(s) | 78 |
| BslFI | GGGAC | 1 cut(s) | 102 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmFI | GGGAC | 1 cut(s) | 102 |
| BsnI | GGCC | 1 cut(s) | 563 |
| Bsp1286I | GDGCHC | 1 cut(s) | 413 |
| Bsp143I | GATC | 2 cut(s) | 181, 381 |
| BspANI | GGCC | 1 cut(s) | 563 |
| BspCNI | CTCAG | 1 cut(s) | 365 |
| BspDI | ATCGAT | 1 cut(s) | 78 |
| BspLI | GGNNCC | 2 cut(s) | 90, 235 |
| BssMI | GATC | 2 cut(s) | 181, 381 |
| Bst4CI | ACNGT | 2 cut(s) | 406, 551 |
| BstBAI | YACGTR | 1 cut(s) | 142 |
| BstDEI | CTNAG | 1 cut(s) | 352 |
| BstF5I | GGATG | 3 cut(s) | 98, 340, 598 |
| BstKTI | GATC | 2 cut(s) | 184, 384 |
| BstMBI | GATC | 2 cut(s) | 181, 381 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| BstSNI | TACGTA | 1 cut(s) | 142 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| Bsu15I | ATCGAT | 1 cut(s) | 78 |
| Bsu36I | CCTNAGG | 1 cut(s) | 352 |
| BsuI | GTATCC | 1 cut(s) | 154 |
| BsuRI | GGCC | 1 cut(s) | 563 |
| BsuTUI | ATCGAT | 1 cut(s) | 78 |
| BtsCI | GGATG | 3 cut(s) | 98, 340, 598 |
| BtsI | GCAGTG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 2 cut(s) | 89, 561 |
| ClaI | ATCGAT | 1 cut(s) | 78 |
| Csp6I | GTAC | 2 cut(s) | 307, 337 |
| CviAII | CATG | 2 cut(s) | 85, 490 |
| CviQI | GTAC | 2 cut(s) | 307, 337 |
| DdeI | CTNAG | 1 cut(s) | 352 |
| DpnI | GATC | 2 cut(s) | 183, 383 |
| DpnII | GATC | 2 cut(s) | 181, 381 |
| DraIII | CACNNNGTG | 1 cut(s) | 325 |
| Eco105I | TACGTA | 1 cut(s) | 142 |
| Eco24I | GRGCYC | 1 cut(s) | 413 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| Eco81I | CCTNAGG | 1 cut(s) | 352 |
| EcoT38I | GRGCYC | 1 cut(s) | 413 |
| FaeI | CATG | 2 cut(s) | 88, 493 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 377, 409, 563, 595 |
| FaqI | GGGAC | 1 cut(s) | 102 |
| FatI | CATG | 2 cut(s) | 84, 489 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 265 |
| FokI | GGATG | 3 cut(s) | 85, 327, 605 |
| FriOI | GRGCYC | 1 cut(s) | 413 |
| Fsp4HI | GCNGC | 1 cut(s) | 265 |
| GluI | GCNGC | 1 cut(s) | 265 |
| HaeIII | GGCC | 1 cut(s) | 563 |
| Hin1II | CATG | 2 cut(s) | 88, 493 |
| HindIII | AAGCTT | 1 cut(s) | 519 |
| HinfI | GANTC | 3 cut(s) | 75, 290, 493 |
| Hpy188III | TCNNGA | 4 cut(s) | 354, 385, 394, 568 |
| HpyAV | CCTTC | 1 cut(s) | 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 406, 551 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 3 cut(s) | 276, 449, 554 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 352 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 2 cut(s) | 88, 493 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 181, 381 |
| LmnI | GCTCC | 1 cut(s) | 538 |
| LpnPI | CCDG | 2 cut(s) | 339, 582 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| LweI | GCATC | 3 cut(s) | 18, 436, 583 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MalI | GATC | 2 cut(s) | 183, 383 |
| MboI | GATC | 2 cut(s) | 181, 381 |
| MboII | GAAGA | 3 cut(s) | 30, 313, 412 |
| MhlI | GDGCHC | 1 cut(s) | 413 |
| MluCI | AATT | 1 cut(s) | 199 |
| MlyI | GAGTC | 1 cut(s) | 502 |
| MnlI | CCTC | 4 cut(s) | 112, 354, 361, 429 |
| MseI | TTAA | 1 cut(s) | 207 |
| MslI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 273, 455, 538, 560, 602 |
| NdeII | GATC | 2 cut(s) | 181, 381 |
| NlaIII | CATG | 2 cut(s) | 88, 493 |
| NlaIV | GGNNCC | 2 cut(s) | 90, 235 |
| PfeI | GAWTC | 2 cut(s) | 75, 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 325 |
| PkrI | GCNGC | 1 cut(s) | 266 |
| PleI | GAGTC | 1 cut(s) | 501 |
| PpsI | GAGTC | 1 cut(s) | 501 |
| Ppu21I | YACGTR | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 2 cut(s) | 90, 235 |
| PspPI | GGNCC | 2 cut(s) | 89, 561 |
| RsaI | GTAC | 2 cut(s) | 308, 338 |
| RsaNI | GTAC | 2 cut(s) | 307, 337 |
| RseI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| SaqAI | TTAA | 1 cut(s) | 207 |
| SatI | GCNGC | 1 cut(s) | 265 |
| Sau3AI | GATC | 2 cut(s) | 181, 381 |
| Sau96I | GGNCC | 2 cut(s) | 89, 561 |
| SchI | GAGTC | 1 cut(s) | 502 |
| SduI | GDGCHC | 1 cut(s) | 413 |
| SfaNI | GCATC | 3 cut(s) | 18, 436, 583 |
| SinI | GGWCC | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 47, 125, 395, 488 |
| SnaBI | TACGTA | 1 cut(s) | 142 |
| Sse9I | AATT | 1 cut(s) | 199 |
| TaaI | ACNGT | 2 cut(s) | 406, 551 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 1 cut(s) | 199 |
| TatI | WGTACW | 1 cut(s) | 306 |
| TfiI | GAWTC | 2 cut(s) | 75, 290 |
| Tru1I | TTAA | 1 cut(s) | 207 |
| Tru9I | TTAA | 1 cut(s) | 207 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TseI | GCWGC | 1 cut(s) | 264 |
| TspDTI | ATGAA | 3 cut(s) | 73, 314, 413 |
| TspRI | CASTG | 1 cut(s) | 138 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 325 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 199 |