Integrase core domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 1 cut(s) | 121 |
| AcsI | RAATTY | 2 cut(s) | 32, 290 |
| AfaI | GTAC | 2 cut(s) | 25, 74 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 385 |
| AgsI | TTSAA | 5 cut(s) | 43, 172, 277, 295, 316 |
| AluBI | AGCT | 3 cut(s) | 49, 110, 273 |
| AluI | AGCT | 3 cut(s) | 49, 110, 273 |
| AlwI | GGATC | 1 cut(s) | 121 |
| AoxI | GGCC | 1 cut(s) | 376 |
| ApaI | GGGCCC | 1 cut(s) | 380 |
| ApoI | RAATTY | 2 cut(s) | 32, 290 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| AspS9I | GGNCC | 3 cut(s) | 221, 376, 377 |
| AsuC2I | CCSGG | 1 cut(s) | 195 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 221 |
| BaeGI | GKGCMC | 1 cut(s) | 380 |
| BanII | GRGCYC | 1 cut(s) | 380 |
| BauI | CACGAG | 1 cut(s) | 65 |
| BceAI | ACGGC | 2 cut(s) | 77, 356 |
| BcnI | CCSGG | 1 cut(s) | 195 |
| BfaI | CTAG | 2 cut(s) | 27, 381 |
| BmcAI | AGTACT | 1 cut(s) | 25 |
| Bme1390I | CCNGG | 1 cut(s) | 195 |
| Bme18I | GGWCC | 1 cut(s) | 221 |
| BmgT120I | GGNCC | 3 cut(s) | 221, 376, 377 |
| BmiI | GGNNCC | 1 cut(s) | 378 |
| BmrFI | CCNGG | 1 cut(s) | 195 |
| BmsI | GCATC | 1 cut(s) | 316 |
| BpmI | CTGGAG | 1 cut(s) | 359 |
| BpuMI | CCSGG | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 4 cut(s) | 130, 348, 363, 372 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 385 |
| BseDI | CCNNGG | 4 cut(s) | 130, 348, 363, 372 |
| BseGI | GGATG | 1 cut(s) | 358 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 385 |
| BseSI | GKGCMC | 1 cut(s) | 380 |
| BsgI | GTGCAG | 1 cut(s) | 276 |
| BshFI | GGCC | 1 cut(s) | 378 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BsiWI | CGTACG | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 385 |
| BsmFI | GGGAC | 1 cut(s) | 297 |
| BsnI | GGCC | 1 cut(s) | 378 |
| Bsp120I | GGGCCC | 1 cut(s) | 376 |
| Bsp1286I | GDGCHC | 1 cut(s) | 380 |
| Bsp143I | GATC | 1 cut(s) | 126 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 1 cut(s) | 378 |
| BspLI | GGNNCC | 1 cut(s) | 378 |
| BspPI | GGATC | 1 cut(s) | 121 |
| BssECI | CCNNGG | 4 cut(s) | 130, 348, 363, 372 |
| BssMI | GATC | 1 cut(s) | 126 |
| BssSI | CACGAG | 1 cut(s) | 65 |
| BssT1I | CCWWGG | 1 cut(s) | 363 |
| Bst2BI | CACGAG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 349 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 1 cut(s) | 85 |
| BstDEI | CTNAG | 2 cut(s) | 7, 210 |
| BstDSI | CCRYGG | 3 cut(s) | 130, 348, 372 |
| BstF5I | GGATG | 1 cut(s) | 358 |
| BstKTI | GATC | 1 cut(s) | 129 |
| BstMBI | GATC | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 160 |
| BstSCI | CCNGG | 1 cut(s) | 193 |
| BstSLI | GKGCMC | 1 cut(s) | 380 |
| BsuRI | GGCC | 1 cut(s) | 378 |
| BtgI | CCRYGG | 3 cut(s) | 130, 348, 372 |
| BtsCI | GGATG | 1 cut(s) | 358 |
| Cac8I | GCNNGC | 1 cut(s) | 85 |
| Cfr13I | GGNCC | 3 cut(s) | 221, 376, 377 |
| Csp6I | GTAC | 2 cut(s) | 24, 73 |
| CviAII | CATG | 3 cut(s) | 116, 124, 251 |
| CviJI | RGCY | 6 cut(s) | 49, 110, 273, 319, 371, 378 |
| CviKI_1 | RGCY | 6 cut(s) | 49, 110, 273, 319, 371, 378 |
| CviQI | GTAC | 2 cut(s) | 24, 73 |
| DdeI | CTNAG | 2 cut(s) | 7, 210 |
| DpnI | GATC | 1 cut(s) | 128 |
| DpnII | GATC | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 1 cut(s) | 363 |
| Eco24I | GRGCYC | 1 cut(s) | 380 |
| Eco47I | GGWCC | 1 cut(s) | 221 |
| EcoO109I | RGGNCCY | 1 cut(s) | 377 |
| EcoRI | GAATTC | 1 cut(s) | 290 |
| EcoT14I | CCWWGG | 1 cut(s) | 363 |
| EcoT38I | GRGCYC | 1 cut(s) | 380 |
| ErhI | CCWWGG | 1 cut(s) | 363 |
| FaeI | CATG | 3 cut(s) | 119, 127, 254 |
| FaiI | YATR | 6 cut(s) | 117, 125, 252, 327, 345, 359 |
| FaqI | GGGAC | 1 cut(s) | 297 |
| FatI | CATG | 3 cut(s) | 115, 123, 250 |
| FauI | CCCGC | 1 cut(s) | 10 |
| FokI | GGATG | 1 cut(s) | 365 |
| FriOI | GRGCYC | 1 cut(s) | 380 |
| FspBI | CTAG | 2 cut(s) | 27, 381 |
| GsuI | CTGGAG | 1 cut(s) | 359 |
| HaeIII | GGCC | 1 cut(s) | 378 |
| HapII | CCGG | 1 cut(s) | 195 |
| Hin1II | CATG | 3 cut(s) | 119, 127, 254 |
| HindIII | AAGCTT | 2 cut(s) | 108, 271 |
| HpaII | CCGG | 1 cut(s) | 195 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 2 cut(s) | 182, 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 182, 301 |
| HpyCH4III | ACNGT | 1 cut(s) | 349 |
| HpyCH4IV | ACGT | 2 cut(s) | 184, 205 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 83, 257 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 160 |
| HpyF3I | CTNAG | 2 cut(s) | 7, 210 |
| HpySE526I | ACGT | 2 cut(s) | 184, 205 |
| Hsp92II | CATG | 3 cut(s) | 119, 127, 254 |
| Kzo9I | GATC | 1 cut(s) | 126 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| LpnPI | CCDG | 2 cut(s) | 208, 323 |
| LweI | GCATC | 1 cut(s) | 316 |
| MaeI | CTAG | 2 cut(s) | 27, 381 |
| MaeII | ACGT | 2 cut(s) | 184, 205 |
| MaeIII | GTNAC | 1 cut(s) | 201 |
| MalI | GATC | 1 cut(s) | 128 |
| MboI | GATC | 1 cut(s) | 126 |
| MfeI | CAATTG | 2 cut(s) | 38, 147 |
| MhlI | GDGCHC | 1 cut(s) | 380 |
| MluCI | AATT | 5 cut(s) | 32, 38, 147, 172, 290 |
| MnlI | CCTC | 1 cut(s) | 61 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 9 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 195 |
| MunI | CAATTG | 2 cut(s) | 38, 147 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 160 |
| NciI | CCSGG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 126 |
| NlaIII | CATG | 3 cut(s) | 119, 127, 254 |
| NlaIV | GGNNCC | 1 cut(s) | 378 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 72 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| Pfl23II | CGTACG | 1 cut(s) | 72 |
| PspLI | CGTACG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 378 |
| PspOMI | GGGCCC | 1 cut(s) | 376 |
| PspPI | GGNCC | 3 cut(s) | 221, 376, 377 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 190, 222 |
| RsaI | GTAC | 2 cut(s) | 25, 74 |
| RsaNI | GTAC | 2 cut(s) | 24, 73 |
| RseI | CAYNNNNRTG | 1 cut(s) | 9 |
| Sau3AI | GATC | 1 cut(s) | 126 |
| Sau96I | GGNCC | 3 cut(s) | 221, 376, 377 |
| ScaI | AGTACT | 1 cut(s) | 25 |
| ScrFI | CCNGG | 1 cut(s) | 195 |
| SduI | GDGCHC | 1 cut(s) | 380 |
| SetI | ASST | 7 cut(s) | 51, 112, 187, 208, 275, 300, 335 |
| SfaNI | GCATC | 1 cut(s) | 316 |
| SinI | GGWCC | 1 cut(s) | 221 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 9 |
| Sse9I | AATT | 5 cut(s) | 32, 38, 147, 172, 290 |
| SsiI | CCGC | 1 cut(s) | 17 |
| SspMI | CTAG | 2 cut(s) | 27, 381 |
| StyD4I | CCNGG | 1 cut(s) | 193 |
| StyI | CCWWGG | 1 cut(s) | 363 |
| TaaI | ACNGT | 1 cut(s) | 349 |
| TaiI | ACGT | 2 cut(s) | 187, 208 |
| TasI | AATT | 5 cut(s) | 32, 38, 147, 172, 290 |
| TatI | WGTACW | 1 cut(s) | 23 |
| TspDTI | ATGAA | 3 cut(s) | 27, 69, 239 |
| TspGWI | ACGGA | 1 cut(s) | 119 |
| VpaK11BI | GGWCC | 1 cut(s) | 221 |
| XapI | RAATTY | 2 cut(s) | 32, 290 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |
| XspI | CTAG | 2 cut(s) | 27, 381 |
| ZrmI | AGTACT | 1 cut(s) | 25 |