transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 13 - 106 | 5.7e-18 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 836 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 298 |
| AcsI | RAATTY | 1 cut(s) | 172 |
| AdeI | CACNNNGTG | 1 cut(s) | 298 |
| AfaI | GTAC | 4 cut(s) | 281, 311, 714, 875 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 298, 684, 688 |
| AgsI | TTSAA | 9 cut(s) | 10, 131, 172, 263, 518, 550, 757, 781, 868 |
| AjnI | CCWGG | 1 cut(s) | 745 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 34, 860, 892 |
| AluBI | AGCT | 5 cut(s) | 218, 494, 514, 661, 809 |
| AluI | AGCT | 5 cut(s) | 218, 494, 514, 661, 809 |
| Alw26I | GTCTC | 1 cut(s) | 730 |
| AoxI | GGCC | 2 cut(s) | 534, 675 |
| ApeKI | GCWGC | 2 cut(s) | 237, 859 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| AspS9I | GGNCC | 3 cut(s) | 62, 534, 773 |
| AsuHPI | GGTGA | 1 cut(s) | 689 |
| AvaII | GGWCC | 2 cut(s) | 62, 773 |
| AxyI | CCTNAGG | 2 cut(s) | 325, 683 |
| BanI | GGYRCC | 1 cut(s) | 836 |
| BanII | GRGCYC | 1 cut(s) | 386 |
| BbsI | GAAGAC | 1 cut(s) | 380 |
| BbvI | GCAGC | 2 cut(s) | 249, 871 |
| BccI | CCATC | 5 cut(s) | 79, 224, 321, 545, 686 |
| BciT130I | CCWGG | 1 cut(s) | 747 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 154 |
| BcoDI | GTCTC | 1 cut(s) | 730 |
| BfaI | CTAG | 1 cut(s) | 762 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| BisI | GCNGC | 2 cut(s) | 238, 860 |
| BlsI | GCNGC | 2 cut(s) | 239, 861 |
| BmcAI | AGTACT | 1 cut(s) | 714 |
| Bme1390I | CCNGG | 1 cut(s) | 747 |
| Bme18I | GGWCC | 2 cut(s) | 62, 773 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 534, 773 |
| BmiI | GGNNCC | 4 cut(s) | 63, 208, 774, 838 |
| BmrFI | CCNGG | 1 cut(s) | 747 |
| BmsI | GCATC | 2 cut(s) | 409, 556 |
| BpiI | GAAGAC | 1 cut(s) | 380 |
| Bsa29I | ATCGAT | 1 cut(s) | 51 |
| BsaAI | YACGTR | 1 cut(s) | 115 |
| BsaJI | CCNNGG | 2 cut(s) | 700, 802 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 298, 684, 688 |
| Bse1I | ACTGG | 1 cut(s) | 899 |
| Bse21I | CCTNAGG | 2 cut(s) | 325, 683 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseBI | CCWGG | 1 cut(s) | 747 |
| BseCI | ATCGAT | 1 cut(s) | 51 |
| BseDI | CCNNGG | 2 cut(s) | 700, 802 |
| BseGI | GGATG | 4 cut(s) | 71, 313, 571, 678 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 298, 684, 688 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BseNI | ACTGG | 1 cut(s) | 899 |
| BseXI | GCAGC | 2 cut(s) | 249, 871 |
| BshFI | GGCC | 2 cut(s) | 536, 677 |
| BshNI | GGYRCC | 1 cut(s) | 836 |
| BshVI | ATCGAT | 1 cut(s) | 51 |
| BslFI | GGGAC | 2 cut(s) | 75, 786 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 298, 684, 688 |
| BsmAI | GTCTC | 1 cut(s) | 730 |
| BsmFI | GGGAC | 2 cut(s) | 75, 786 |
| BsmI | GAATGC | 1 cut(s) | 637 |
| BsnI | GGCC | 2 cut(s) | 536, 677 |
| Bsp1286I | GDGCHC | 1 cut(s) | 386 |
| Bsp143I | GATC | 2 cut(s) | 154, 354 |
| BspANI | GGCC | 2 cut(s) | 536, 677 |
| BspCNI | CTCAG | 1 cut(s) | 338 |
| BspDI | ATCGAT | 1 cut(s) | 51 |
| BspHI | TCATGA | 1 cut(s) | 667 |
| BspLI | GGNNCC | 4 cut(s) | 63, 208, 774, 838 |
| BspQI | GCTCTTC | 1 cut(s) | 888 |
| BspT107I | GGYRCC | 1 cut(s) | 836 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BsrI | ACTGG | 1 cut(s) | 899 |
| BssECI | CCNNGG | 2 cut(s) | 700, 802 |
| BssMI | GATC | 2 cut(s) | 154, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 700 |
| Bst2UI | CCWGG | 1 cut(s) | 747 |
| Bst4CI | ACNGT | 3 cut(s) | 379, 524, 873 |
| Bst6I | CTCTTC | 1 cut(s) | 888 |
| BstBAI | YACGTR | 1 cut(s) | 115 |
| BstDEI | CTNAG | 4 cut(s) | 325, 611, 657, 683 |
| BstDSI | CCRYGG | 1 cut(s) | 802 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 686 |
| BstF5I | GGATG | 4 cut(s) | 71, 313, 571, 678 |
| BstKTI | GATC | 2 cut(s) | 157, 357 |
| BstMAI | GTCTC | 1 cut(s) | 730 |
| BstMBI | GATC | 2 cut(s) | 154, 354 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 246, 428, 511, 533, 575 |
| BstNI | CCWGG | 1 cut(s) | 747 |
| BstSCI | CCNGG | 1 cut(s) | 745 |
| BstSNI | TACGTA | 1 cut(s) | 115 |
| BstV1I | GCAGC | 2 cut(s) | 249, 871 |
| BstV2I | GAAGAC | 1 cut(s) | 380 |
| Bsu15I | ATCGAT | 1 cut(s) | 51 |
| Bsu36I | CCTNAGG | 2 cut(s) | 325, 683 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BsuRI | GGCC | 2 cut(s) | 536, 677 |
| BsuTUI | ATCGAT | 1 cut(s) | 51 |
| BtgI | CCRYGG | 1 cut(s) | 802 |
| BtsCI | GGATG | 4 cut(s) | 71, 313, 571, 678 |
| BtsI | GCAGTG | 1 cut(s) | 111 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 906 |
| CciI | TCATGA | 1 cut(s) | 667 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 534, 773 |
| ClaI | ATCGAT | 1 cut(s) | 51 |
| Csp6I | GTAC | 4 cut(s) | 280, 310, 713, 874 |
| CviAII | CATG | 5 cut(s) | 58, 463, 668, 826, 939 |
| CviQI | GTAC | 4 cut(s) | 280, 310, 713, 874 |
| DdeI | CTNAG | 4 cut(s) | 325, 611, 657, 683 |
| DpnI | GATC | 2 cut(s) | 156, 356 |
| DpnII | GATC | 2 cut(s) | 154, 354 |
| DraI | TTTAAA | 1 cut(s) | 847 |
| DraIII | CACNNNGTG | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 1 cut(s) | 888 |
| EarI | CTCTTC | 1 cut(s) | 888 |
| Eco105I | TACGTA | 1 cut(s) | 115 |
| Eco130I | CCWWGG | 1 cut(s) | 700 |
| Eco24I | GRGCYC | 1 cut(s) | 386 |
| Eco47I | GGWCC | 2 cut(s) | 62, 773 |
| Eco81I | CCTNAGG | 2 cut(s) | 325, 683 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 686 |
| EcoRII | CCWGG | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 700 |
| EcoT38I | GRGCYC | 1 cut(s) | 386 |
| ErhI | CCWWGG | 1 cut(s) | 700 |
| FaeI | CATG | 5 cut(s) | 61, 466, 671, 829, 942 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 536, 568 |
| FaqI | GGGAC | 2 cut(s) | 75, 786 |
| FatI | CATG | 5 cut(s) | 57, 462, 667, 825, 938 |
| FauNDI | CATATG | 1 cut(s) | 625 |
| FbaI | TGATCA | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 2 cut(s) | 238, 860 |
| FokI | GGATG | 4 cut(s) | 58, 300, 578, 665 |
| FriOI | GRGCYC | 1 cut(s) | 386 |
| Fsp4HI | GCNGC | 2 cut(s) | 238, 860 |
| FspBI | CTAG | 1 cut(s) | 762 |
| GluI | GCNGC | 2 cut(s) | 238, 860 |
| HaeIII | GGCC | 2 cut(s) | 536, 677 |
| Hin1II | CATG | 5 cut(s) | 61, 466, 671, 829, 942 |
| HindIII | AAGCTT | 1 cut(s) | 492 |
| HinfI | GANTC | 4 cut(s) | 48, 263, 466, 725 |
| HphI | GGTGA | 1 cut(s) | 689 |
| Hpy166II | GTNNAC | 1 cut(s) | 930 |
| Hpy188III | TCNNGA | 5 cut(s) | 327, 358, 541, 668, 923 |
| Hpy8I | GTNNAC | 1 cut(s) | 930 |
| HpyAV | CCTTC | 2 cut(s) | 388, 682 |
| HpyCH4III | ACNGT | 3 cut(s) | 379, 524, 873 |
| HpyCH4IV | ACGT | 2 cut(s) | 114, 730 |
| HpyCH4V | TGCA | 3 cut(s) | 249, 422, 527 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 246, 428, 511, 533, 575 |
| HpyF3I | CTNAG | 4 cut(s) | 325, 611, 657, 683 |
| HpySE526I | ACGT | 2 cut(s) | 114, 730 |
| Hsp92II | CATG | 5 cut(s) | 61, 466, 671, 829, 942 |
| Ksp22I | TGATCA | 1 cut(s) | 154 |
| Kzo9I | GATC | 2 cut(s) | 154, 354 |
| LguI | GCTCTTC | 1 cut(s) | 888 |
| LmnI | GCTCC | 2 cut(s) | 511, 806 |
| LpnPI | CCDG | 5 cut(s) | 312, 555, 732, 759, 912 |
| Lsp1109I | GCAGC | 2 cut(s) | 249, 871 |
| LweI | GCATC | 2 cut(s) | 409, 556 |
| MaeI | CTAG | 1 cut(s) | 762 |
| MaeII | ACGT | 2 cut(s) | 114, 730 |
| MaeIII | GTNAC | 1 cut(s) | 786 |
| MalI | GATC | 2 cut(s) | 156, 356 |
| MboI | GATC | 2 cut(s) | 154, 354 |
| MboII | GAAGA | 5 cut(s) | 286, 385, 617, 841, 905 |
| MhlI | GDGCHC | 1 cut(s) | 386 |
| MluCI | AATT | 2 cut(s) | 172, 752 |
| MlyI | GAGTC | 2 cut(s) | 475, 719 |
| MmeI | TCCRAC | 2 cut(s) | 582, 613 |
| MnlI | CCTC | 7 cut(s) | 85, 327, 334, 402, 613, 850, 883 |
| MseI | TTAA | 4 cut(s) | 180, 413, 594, 846 |
| MslI | CAYNNNNRTG | 4 cut(s) | 20, 98, 368, 461 |
| MspR9I | CCNGG | 1 cut(s) | 747 |
| Mva1269I | GAATGC | 1 cut(s) | 637 |
| MvaI | CCWGG | 1 cut(s) | 747 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 246, 428, 511, 533, 575 |
| NdeI | CATATG | 1 cut(s) | 625 |
| NdeII | GATC | 2 cut(s) | 154, 354 |
| NlaIII | CATG | 5 cut(s) | 61, 466, 671, 829, 942 |
| NlaIV | GGNNCC | 4 cut(s) | 63, 208, 774, 838 |
| PagI | TCATGA | 1 cut(s) | 667 |
| PciSI | GCTCTTC | 1 cut(s) | 888 |
| PctI | GAATGC | 1 cut(s) | 637 |
| PfeI | GAWTC | 2 cut(s) | 48, 263 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 298 |
| PkrI | GCNGC | 2 cut(s) | 239, 861 |
| PleI | GAGTC | 2 cut(s) | 474, 719 |
| PpsI | GAGTC | 2 cut(s) | 474, 719 |
| Ppu21I | YACGTR | 1 cut(s) | 115 |
| Psp6I | CCWGG | 1 cut(s) | 745 |
| PspGI | CCWGG | 1 cut(s) | 745 |
| PspN4I | GGNNCC | 4 cut(s) | 63, 208, 774, 838 |
| PspPI | GGNCC | 3 cut(s) | 62, 534, 773 |
| RsaI | GTAC | 4 cut(s) | 281, 311, 714, 875 |
| RsaNI | GTAC | 4 cut(s) | 280, 310, 713, 874 |
| RseI | CAYNNNNRTG | 4 cut(s) | 20, 98, 368, 461 |
| SapI | GCTCTTC | 1 cut(s) | 888 |
| SaqAI | TTAA | 4 cut(s) | 180, 413, 594, 846 |
| SatI | GCNGC | 2 cut(s) | 238, 860 |
| Sau3AI | GATC | 2 cut(s) | 154, 354 |
| Sau96I | GGNCC | 3 cut(s) | 62, 534, 773 |
| ScaI | AGTACT | 1 cut(s) | 714 |
| SchI | GAGTC | 2 cut(s) | 475, 719 |
| ScrFI | CCNGG | 1 cut(s) | 747 |
| SduI | GDGCHC | 1 cut(s) | 386 |
| SfaNI | GCATC | 2 cut(s) | 409, 556 |
| SinI | GGWCC | 2 cut(s) | 62, 773 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 20, 98, 368, 461 |
| SmlI | CTYRAG | 1 cut(s) | 923 |
| SmoI | CTYRAG | 1 cut(s) | 923 |
| SnaBI | TACGTA | 1 cut(s) | 115 |
| Sse9I | AATT | 2 cut(s) | 172, 752 |
| SspMI | CTAG | 1 cut(s) | 762 |
| StyD4I | CCNGG | 1 cut(s) | 745 |
| StyI | CCWWGG | 1 cut(s) | 700 |
| TaaI | ACNGT | 3 cut(s) | 379, 524, 873 |
| TaiI | ACGT | 2 cut(s) | 117, 733 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 2 cut(s) | 172, 752 |
| TatI | WGTACW | 2 cut(s) | 279, 712 |
| TfiI | GAWTC | 2 cut(s) | 48, 263 |
| Tru1I | TTAA | 4 cut(s) | 180, 413, 594, 846 |
| Tru9I | TTAA | 4 cut(s) | 180, 413, 594, 846 |
| TscAI | CASTG | 2 cut(s) | 111, 906 |
| TseI | GCWGC | 2 cut(s) | 237, 859 |
| TspDTI | ATGAA | 5 cut(s) | 46, 287, 386, 722, 842 |
| TspGWI | ACGGA | 2 cut(s) | 667, 819 |
| TspRI | CASTG | 2 cut(s) | 111, 906 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 298 |
| VpaK11BI | GGWCC | 2 cut(s) | 62, 773 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 686 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XspI | CTAG | 1 cut(s) | 762 |
| ZrmI | AGTACT | 1 cut(s) | 714 |