RchiOBHm_Chr5g0043631

protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000013
Physical Location & Seq
Forward (+)
38678881 .. 38683354
4474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32189

Sequence Viewer

Length: 4020 bp
ATGGTTTCTAGAGATATTGTAGATCCTAAGAATGGGAATTCCATGGCTCTTGATAATTTGGGTGAGGCTATGAAGGCTAGGGACCCCAATGAAGCCATAAGTAACCCTAGGGATCCATCAAGTGGTCAAGCATCTACTCAAGCTCAAAAGCCAAGAAAGGGTCCAATTTGTGTGCCTCCTCTAGATATGACGGATTATGAGATTCCATTGCCTTATCCTCAAGTGAAGCGGAAGCAAGAGTTAAAGAAGAAGCAAGAAGCACAAACGAAAGAGTTCATTGAGTTGTTCAAGAAAGTCAACATCAATATCCCTTTGTTGGAAGCCATAAAGCAAGTGCCTTCTTATGCTAAATTTCTAAAGGATGTGTGCACAAACAAAAGAGCATTCAAGGAGCATGAACAAGTTTGTCTAAGTGAGAGTGTATCAGCTATTCTTCAAGGAAAATTGCCTCCTAAACTTAAAGATCCCGGTAGTTTCACCGTGCCATGCACTATTGGGTCAAGATTCTTTGACAAGGCGATGTTGGACTTAGGAGCAAGTATTAATTTGATGCCATATGATATTTATCGAACACTTGGTCTTGATGATCTTAAGCCTTTAAAAATTTCATTGAAAATGGCGGATAGGAGTATTGTCTACCCAAGAGGGATGCTAGAAGATGTGCTTGTGAAGATTGATTCTCTCTATGTGCCGGCGGATTTTGTTGTTCTTGACATGGCTAAGAGTATTGATGTTGAGGAGGATGAATCTCCTATATTGCTTGGTAGAGCATTCATGGCCACCGCCGATACCAACATTAGTGTAAAGAAGGGAATCTTGACGATGACCGTTTTTGATACTACTATTGGCTTTCGAATTTTTGATGCCATGAGAAGTCCTCTTCACTTAGGTGAGTGTTTTCGGGTAGATGTGGTTGATTCCATGGTGGAGAAGACTTTCATTGAAACAAGTGCCAAGGATTCTTTAGTAGCTTCTATTATGCATCATGGAGAAGAGTTCAATGACAAAAGTATTGAAGAAGATGATTCCACTATTGAAGTTGCTATGCCCACCTCTTCCTCACACACTCCTATTAGCATGCTTGATTTTCAACCGAAGTTGTTGCCGTCTATTATTTCTCCTCCTACACTTGAGCTAAAGCCTCTCCCATCTACTCTCAAGTATGCATTTTTGGGACCTAATGACACATTGCCGGTGGTTATCTCCTCCAAGCTTTGTGACGTTGATGAAGCCAAGTTATTGAAGGTGTTGAAAGAGCACAAAGGAGCTTTGGGGTGGACTATAATGGACATAAAGGGAATATGTGCTAGCAAGTGTATGCATCACATTTACATGGAGGAAGGTAGCAAGCCCTCTAGAGATGCTCAAAGAAGACTTAACCCTCCTATGATGGAAGTGGTCAAGAATGAGGTGACAAAGCTTCTAGATGCCGGTGTGATTTATCCTATTTCGGATTCAAAATGGGTTTCTCCTGTACAAGTCGTTCCTAAGAAAGGTGGAATGACGGTGGTGAAGAATGACAAAGGAGAAGATGTTCCTCAAAGGGTGCAAAATGGTTGGAGGGTATGCATAGATTATCGGAAGTTGAATAGTGCTACTAGAAAGGATCATTTCCCTCTACCTTTCATTGACTACATGTTGGAGAGATTGGCGGGACATTCCTATTTTTGCTTCTTAGATGGCTATAGTGGATATAATCAAATTGTGATTGCTCCCGAAGACCAAGAAAAGACGACTTTCACTTGTCCTTTTGGTACCTTTGCTTATAGGCGTATGCCCTTTGGCTTATGTAATGCTCCGGCAACCTTCCAAAGATGTATGATGGCTCTATTTCATGATATGACCGAAAAATTCATGGAAATCTTTATGGATGATTTTTCGGTTCATGGTAACACTTTCGATGATTGCCTACACCATTTGACCCTAGTCTTGAAGCGTTGTGAAGAAAGCAATTTGGTCTTGAATTGGGAGAAGTGCCATTTCATGGTGGAAGAGGGCATTGTCTTAGGTCATGTGGTTTCTAAGAGGGGAATTGAGGTGGACAAAGCAAAGATTGAAGTCATTGAAAAGCTACCTCCACCGGTGAACATCAAAGGTATAAGAAGCTTTTTGGGACATGCCGGCTTTTATCGAAGATTTATTCCAAATTTTTCCAAGATATCCAAGCCTCTATGTGATTTGTTAGCAAAAGATGCTCCTTGGGACTTCAATGAAGCTTGTCTCATTGCTTTCAATGAAATCAAGAGACTCTTGACTTGTGCTCCTATTATGTGTGCTCCCGATTGGTCACTCCCATTTGAGTTGATGTGTGATGCTTCCGATTTTGCCTTAGGGGCGGTGTTGGGACAAAAGCATGGGAGATTGATGCATGCCATCTATTATGCAAGTAGAACCTTGAATGAAGCTCAAGTGAATTACACAACAACGGAGAAAGAACTCTTGGCTATCATATTTGCATTAGAAAAGTTTCGGAGTTATCTCTTGGGTTCTAAAGTGATTGTGCACACGGACCACTCGGCATTGAAGTATCTCTTAGCCAAGAAAGACTCCAAGCCAAGACTTATTAGATGGGTTTTGCTTCTACAAGAGTTTGACATAGAGATTCATGACAAAGCCGGCAAGGAAAATGTGGTAGCGGACCATTTGTCAAGACTTATTGATGGGGGAGATGATTGTATTATTCCTATTGTTGATTCATTTCCGGATGAGCAACTCTTTACTGTTACATCAAGGGAGCTTCCATGGTTTGTTCACATTGTCAATTATTGGGCAAGTGGTGGTACATTTATTCCGGAGGATTGGGACTATCAAACCAAGAGGAGATTTAGAAGAGATGCATGTCGGTATGTATGGGATGACCCTATTCTATGGAAAGTTGGTCAAGACGAAGTTTTGAGAAGATGTGTGCCACAATGGGAAGTTCCTAATATTCTTGAGCATTGTCATTCCCACACTTGTGGTGGACATTTTGGTGGAAAGAAGACCGCTTTCAAGATCCTACAAGCCGGCTTCTTTTGGCCCACATTATTCAAAGATTCTCATGATTATGCCAAAAAGTGTGACCGATGTCAAAGAGTGGGGAGAATCACCTCTAGAGACCAAATGCCTTTGACTAACATCATTGAGGTGGAAATCTTTGACACATGGGGAATAGACTTTATGGGGCCCTTTCCTAATTCAAATGGGTTTGAGTACATTCTTGTTGCGGTGGATTACGTGTCAAAATGGGTAGAAGCGCAAGCAACTCGGACTAATGATGCTAAGGTAGTTCTTAAATTCCTCCAAGAGCACATCTTTACTAGATTTGGCACACCCAAGTTCATCATAAGTGATGGTGGTTCCCATTTTATCAACCGAGCATTTGCTTCACTTTTGAAGAAATATGGGGTTAAACACAAGGTCGCCACTCCCTACCACCCGCAAACAAGTAGGGAAGTGAAGGGAATTCTAGAGAAGACGGTGAATAGCTCAAGGAAGGATTGGAGTACCAAACTTGATGATGCTTTGTGGGCATACCGTACCGCATATAAGACCCCTTTGGGCATGACTCCATTCCGACTTGTTTATGGCAAGGCTTGCCACTTACCCGTAGAGCTTGAGCACAAGGCATTTTGGGCAATAAAGCAATTAAATTTTGATCTAGCCAAAGCGGGTGAGAAGCGAAAATTTGATCTCTATGAGTTGGAGGAAATAAGAAGGGAGGCTTATGATAGTACCAATTTGTTTAAGGAGAGGACAAAGGTAACACATGATAAAAGACTTGTTGAGAAGATCTTTGAGCCTCATCAAAAGGTGCTCCTATACAATTCTAAGCTTCATCTTTTCCCCGGAAAATTAAGATCTCGTTGGAGTGGACCGTATGAAGTGGTTGAGGTATTCCCACATGGAGCTATTGAAGTCAAGAACTTAAGGAATGGGGAAACATTCAAGGTCAATGGGCATCGCCTAAGGCCTTACTTTGACCATACTTATGAGGCTTGTAAAGAGGTGCAATTCCTTGATGACACCACTTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

1339

Amino Acids

152.82

Weight (kDa)

7.81

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 512 - 672 7.7e-31 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 737 - 834 7.5e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 761 - 864 6.9e-37 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 969 - 1026 5.9e-12 Integrase zinc binding domain
rve PF00665 1048 - 1140 2.4e-16 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000013)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00750
fragaria_vesca FvH4_1g09710 FvH4_1g27931 FvH4_1g27951 FvH4_1g27952 FvH4_1g27956 FvH4_1g28083 FvH4_1g28442 FvH4_1g28532 FvH4_1g29491 FvH4_1g29492 FvH4_1g29493 FvH4_1g29494 FvH4_1g29682 FvH4_1g29685 FvH4_1g29771 FvH4_2g08113 FvH4_2g08114 FvH4_2g14571 FvH4_2g22452 FvH4_2g35543 FvH4_3g01281 FvH4_3g19211 FvH4_3g19212 FvH4_3g19232 FvH4_3g21342 FvH4_3g21381 FvH4_3g22811 FvH4_3g26051 FvH4_3g26316 FvH4_3g26555 FvH4_3g31201 FvH4_3g31892 FvH4_3g32071 FvH4_3g36983 FvH4_3g40761 FvH4_3g44964 FvH4_3g44965 FvH4_4g02082 FvH4_4g03221 FvH4_4g05351 FvH4_4g05352 FvH4_4g08761 FvH4_4g08973 FvH4_4g09161 FvH4_4g09241 FvH4_4g09322 FvH4_4g10092 FvH4_4g10251 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14302 FvH4_4g14401 FvH4_4g14402 FvH4_4g14403 FvH4_4g14569 FvH4_4g15806 FvH4_4g15807 FvH4_4g15808 FvH4_4g16144 FvH4_4g16145 FvH4_4g16146 FvH4_4g17204 FvH4_4g17205 FvH4_4g17206 FvH4_4g17207 FvH4_4g17692 FvH4_4g24603 FvH4_5g22912 FvH4_5g34661 FvH4_6g00252 FvH4_6g00253 FvH4_6g18062 FvH4_6g22851 FvH4_6g22852 FvH4_6g32641 FvH4_6g36491 FvH4_6g36492 FvH4_6g37921 FvH4_6g48511 FvH4_7g01732 FvH4_7g01733 FvH4_7g03471 FvH4_7g04071 FvH4_7g04231 FvH4_7g12351 FvH4_7g14381 FvH4_7g20371 FvH4_7g20372 FvH4_7g22571 FvH4_7g25271 FvH4_7g25272 FvH4_7g25273
malus_domestica MD00G1099500.v1.1 MD00G1134900.v1.1 MD00G1199900.v1.1 MD02G1203700.v1.1 MD02G1206700.v1.1 MD07G1097600.v1.1 MD08G1099400.v1.1 MD08G1149900.v1.1 MD08G1150000.v1.1 MD08G1150100.v1.1 MD10G1200800.v1.1 MD15G1306700.v1.1 MD15G1306800.v1.1 MD15G1321900.v1.1 MD16G1251200.v1.1 MD17G1170700.v1.1 MD17G1170900.v1.1
pyrus_communis pycom01g00440 pycom01g00890 pycom01g01140 pycom01g01590 pycom01g01620 pycom01g01640 pycom01g01740 pycom01g02310 pycom01g02760 pycom01g03670 pycom01g04180 pycom01g04200 pycom02g18120 pycom02g18300 pycom02g22040 pycom03g09950 pycom03g10150 pycom03g11910 pycom03g11940 pycom03g18650 pycom04g06630 pycom04g06990 pycom04g07610 pycom04g07750 pycom04g08190 pycom04g09650 pycom04g10380 pycom04g12350 pycom04g12360 pycom05g01490 pycom05g03640 pycom05g06240 pycom05g06610 pycom05g08950 pycom06g05580 pycom06g06900 pycom06g07080 pycom07g10140 pycom07g10970 pycom07g13410 pycom07g15510 pycom07g15520 pycom08g13910 pycom09g12650 pycom09g13010 pycom09g13630 pycom09g13780 pycom09g13860 pycom09g14280 pycom10g07230 pycom1125g00040 pycom1153g00020 pycom11g09720 pycom11g09730 pycom11g09740 pycom11g16740 pycom11g17060 pycom11g20170 pycom1217g00060 pycom12382g00040 pycom12405g00030 pycom12406g00010 pycom12406g00020 pycom12419g00290 pycom12420g00030 pycom12420g00060 pycom12420g00070 pycom12420g00080 pycom12420g00110 pycom12423g00120 pycom12424g00040 pycom12424g00050 pycom12426g00020 pycom12426g00150 pycom12426g00160 pycom12426g00320 pycom12426g00650 pycom12426g00730 pycom12429g00030 pycom12439g00060 pycom12463g00030 pycom12468g00010 pycom12526g00030 pycom12526g00050 pycom12534g00010 pycom12556g00050 pycom12561g00280 pycom12568g00070 pycom12569g00010 pycom1256g00080 pycom1256g00120 pycom1256g00270 pycom1256g00280 pycom12575g00020 pycom12575g00060 pycom12577g00010 pycom12578g00010 pycom12589g00010 pycom12594g00010 pycom12596g00020 pycom12613g00040 pycom12613g00050 pycom12621g00020 pycom12630g00030 pycom12630g00090 pycom12633g00030 pycom12658g00080 pycom12659g00130 pycom12659g00240 pycom12661g00180 pycom12674g00010 pycom12675g00080 pycom12698g00020 pycom12g05860 pycom12g09040 pycom12g09680 pycom12g11990 pycom12g12930 pycom12g12940 pycom12g14090 pycom13g09490 pycom13g17080 pycom13g21650 pycom13g21860 pycom13g22080 pycom13g22290 pycom13g22300 pycom13g23220 pycom13g24040 pycom13g24190 pycom13g24790 pycom13g25360 pycom13g25680 pycom13g25770 pycom13g25780 pycom13g25910 pycom13g26110 pycom13g26270 pycom13g26380 pycom13g26390 pycom13g26480 pycom13g26920 pycom13g27220 pycom13g28550 pycom13g29330 pycom14g07990 pycom14g08020 pycom14g08690 pycom14g08860 pycom14g10000 pycom1534g00030 pycom15g21840 pycom15g29900 pycom15g31990 pycom15g34410 pycom1604g00100 pycom1667g00020 pycom16g19300 pycom16g21890 pycom16g21940 pycom1729g00050 pycom1729g00170 pycom1735g00030 pycom1735g00060 pycom1735g00080 pycom17g11600 pycom17g11920 pycom17g12980 pycom17g15280 pycom17g16060 pycom17g16510 pycom17g17570 pycom17g17580 pycom17g17590 pycom17g17710 pycom17g17720 pycom17g17940 pycom17g18100 pycom17g18550 pycom17g18810 pycom1844g00050 pycom1844g00060 pycom1845g00030 pycom1845g00090 pycom1866g00040 pycom1867g00030 pycom1880g00080 pycom1903g00030 pycom1903g00050 pycom1903g00080 pycom2002g00080 pycom2177g00050 pycom2205g00030 pycom2217g00050 pycom2229g00020 pycom243g00100 pycom2596g00020 pycom2751g00010 pycom2821g00080 pycom2933g00010 pycom2989g00010 pycom323g00010 pycom420g00370 pycom420g00380 pycom420g00830 pycom436g00020 pycom436g00090 pycom436g00250 pycom436g00320 pycom505g00020 pycom505g00060 pycom505g00070 pycom510g00040 pycom5153684g00020 pycom5153684g00460 pycom531g00010 pycom531g00020 pycom556g00100 pycom608g00070 pycom808g00020 pycom808g00390 pycom808g00430 pycom808g00440 pycom808g00660 pycom808g00690 pycom889g00020 pycom889g00070 pycom920g00010 pycom992g00020 pycom992g00030
rosa_chinensis RchiOBHm_Chr0c01g0497691 RchiOBHm_Chr0c36g0502941 RchiOBHm_Chr1g0320831 RchiOBHm_Chr1g0320841 RchiOBHm_Chr1g0344611 RchiOBHm_Chr1g0358301 RchiOBHm_Chr1g0381281 RchiOBHm_Chr1g0381291 RchiOBHm_Chr2g0117701 RchiOBHm_Chr2g0130161 RchiOBHm_Chr2g0130421 RchiOBHm_Chr2g0132971 RchiOBHm_Chr2g0133871 RchiOBHm_Chr2g0154881 RchiOBHm_Chr2g0154911 RchiOBHm_Chr3g0450421 RchiOBHm_Chr3g0452811 RchiOBHm_Chr3g0469711 RchiOBHm_Chr3g0493781 RchiOBHm_Chr3g0495801 RchiOBHm_Chr4g0404441 RchiOBHm_Chr4g0405891 RchiOBHm_Chr4g0410431 RchiOBHm_Chr4g0415841 RchiOBHm_Chr4g0418061 RchiOBHm_Chr5g0043631 RchiOBHm_Chr6g0272771 RchiOBHm_Chr7g0180211 RchiOBHm_Chr7g0193951
rosa_multiflora Rmu_co8039452.1_g000001 Rmu_co8083434.1_g000001 Rmu_co8112738.1_g000001 Rmu_co8202386.1_g000001 Rmu_co8313305.1_g000001 Rmu_sc0000007.1_g000025 Rmu_sc0000083.1_g000007 Rmu_sc0000322.1_g000029 Rmu_sc0000516.1_g000040 Rmu_sc0000621.1_g000033 Rmu_sc0000914.1_g000005 Rmu_sc0001136.1_g000005 Rmu_sc0001306.1_g000046 Rmu_sc0001438.1_g000017 Rmu_sc0001438.1_g000018 Rmu_sc0001504.1_g000001 Rmu_sc0001675.1_g000001 Rmu_sc0001678.1_g000001 Rmu_sc0002082.1_g000080 Rmu_sc0002206.1_g000035 Rmu_sc0002457.1_g000001 Rmu_sc0003002.1_g000012 Rmu_sc0003232.1_g000021 Rmu_sc0003376.1_g000002 Rmu_sc0003432.1_g000001 Rmu_sc0003574.1_g000002 Rmu_sc0003753.1_g000023 Rmu_sc0004239.1_g000003 Rmu_sc0004866.1_g000020 Rmu_sc0004904.1_g000009 Rmu_sc0005470.1_g000003 Rmu_sc0005835.1_g000005 Rmu_sc0005925.1_g000002 Rmu_sc0006358.1_g000001 Rmu_sc0006366.1_g000022 Rmu_sc0006401.1_g000001 Rmu_sc0006489.1_g000001 Rmu_sc0006652.1_g000001 Rmu_sc0007038.1_g000014 Rmu_sc0007067.1_g000001 Rmu_sc0007480.1_g000005 Rmu_sc0008412.1_g000001 Rmu_sc0008719.1_g000001 Rmu_sc0009019.1_g000001 Rmu_sc0009438.1_g000008 Rmu_sc0009785.1_g000015 Rmu_sc0010170.1_g000002 Rmu_sc0012567.1_g000001 Rmu_sc0014039.1_g000002 Rmu_sc0014727.1_g000003 Rmu_sc0016222.1_g000001 Rmu_sc0017735.1_g000001 Rmu_sc0017868.1_g000001 Rmu_sc0017956.1_g000001 Rmu_sc0018810.1_g000001 Rmu_sc0019109.1_g000001 Rmu_sc0020243.1_g000001 Rmu_sc0020660.1_g000001 Rmu_sc0022433.1_g000001 Rmu_sc0022595.1_g000001 Rmu_sc0023258.1_g000001 Rmu_sc0024488.1_g000001 Rmu_sc0025858.1_g000001 Rmu_sc0026481.1_g000003 Rmu_sc0028000.1_g000001 Rmu_sc0031652.1_g000001 Rmu_sc0032644.1_g000001 Rmu_sc0033297.1_g000001 Rmu_sc0040410.1_g000001 Rmu_sc0042790.1_g000002 Rmu_ssc0000011.1_g000053 Rmu_ssc0000089.1_g000019 Rmu_ssc0000350.1_g000017
rosa_roxburghii Rroxscaffold_10G00433140 Rroxscaffold_1G00030920 Rroxscaffold_1G00030960 Rroxscaffold_1G00031010 Rroxscaffold_2G00085620 Rroxscaffold_2G00117570 Rroxscaffold_2G00117640 Rroxscaffold_3G00239020 Rroxscaffold_3G00245490 Rroxscaffold_4G00318740 Rroxscaffold_5G00333750 Rroxscaffold_5G00351140 Rroxscaffold_5G00351170 Rroxscaffold_6G00391220 Rroxscaffold_6G00391230 Rroxscaffold_7G00194870 Rroxscaffold_7G00196310 Rroxscaffold_7G00203910 Rroxscaffold_8G00436890 Rroxscaffold_9G00437900
rosa_rugosa Rorug04G0034000 Rorug04G0049300
rosa_samantha Rh2BG324800 Rh3CG286600 Rh4AG154200 Rh4BG060200 Rh5AG465000
rosa_wichuraiana Rw0G001700 Rw0G002220 Rw0G002610 Rw0G003900 Rw0G005180 Rw0G005190 Rw0G005330 Rw0G010320 Rw0G010460 Rw0G011800 Rw0G012250 Rw0G012750 Rw0G012760 Rw0G012770 Rw0G015330 Rw0G018210 Rw0G020550 Rw0G020700 Rw0G020810 Rw0G021790 Rw0G022660 Rw0G022910 Rw1G008700 Rw1G008870 Rw1G009360 Rw1G009610 Rw1G009750 Rw1G009760 Rw1G009910 Rw1G010630 Rw1G010650 Rw2G022280 Rw2G023370 Rw2G023960 Rw2G025190 Rw2G025550 Rw2G025590 Rw2G025620 Rw2G025720 Rw2G025730 Rw2G025790 Rw2G025810 Rw2G025880 Rw2G026750 Rw2G033860 Rw2G037040 Rw3G025490 Rw3G026360 Rw3G027500 Rw3G027510 Rw3G027820 Rw3G028390 Rw3G028500 Rw3G028640 Rw3G029070 Rw3G029140 Rw3G029220 Rw3G029610 Rw4G002830 Rw4G009210 Rw4G009560 Rw4G010400 Rw4G010860 Rw4G011150 Rw4G011260 Rw4G011700 Rw4G012670 Rw4G018460 Rw4G020770 Rw5G029790 Rw5G029800 Rw5G030040 Rw5G030860 Rw5G030940 Rw5G030950 Rw5G030970 Rw5G031090 Rw5G031230 Rw5G031240 Rw5G031290 Rw5G031330 Rw5G031340 Rw5G031350 Rw5G031360 Rw5G031420 Rw5G031430 Rw5G031470 Rw5G031530 Rw5G045200 Rw5G049340 Rw5G049830 Rw6G001320 Rw6G003070 Rw6G007640 Rw6G011560 Rw6G012460 Rw6G014020 Rw6G014530 Rw6G014590 Rw6G015150 Rw6G015160 Rw6G015200 Rw6G015210 Rw6G015220 Rw6G015270 Rw6G015280 Rw6G015310 Rw6G015330 Rw6G015400 Rw6G016140 Rw6G016410 Rw6G016860 Rw6G028980 Rw6G035110 Rw7G023030 Rw7G024040 Rw7G025740 Rw7G028390 Rw7G028530 Rw7G028600 Rw7G028610 Rw7G028620 Rw7G028630 Rw7G028640 Rw7G028920 Rw7G031450 Rw7G034150 Rw7G038570 Rw7G041520 Rw7G042470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1754
AccB1I GGYRCC 1 cut(s) 1754
AccB7I CCANNNNNTGG 2 cut(s) 122, 1984
AccI GTMKAC 1 cut(s) 636
AccIII TCCGGA 2 cut(s) 2701, 2791
AclWI GGATC 6 cut(s) 17, 107, 120, 458, 1614, 2989
AcoI YGGCCR 1 cut(s) 777
AfaI GTAC 7 cut(s) 1476, 1756, 2782, 3194, 3487, 3520, 3715
AfiI CCNNNNNNNGG 6 cut(s) 32, 122, 158, 316, 1493, 1984
AflII CTTAAG 2 cut(s) 590, 3907
AflIII ACRYGT 2 cut(s) 1635, 3216
AgeI ACCGGT 1 cut(s) 2080
AhdI GACNNNNNGTC 1 cut(s) 2644
AjuI GAANNNNNNNTTGG 2 cut(s) 2423, 2455
AleI CACNNNNGTG 2 cut(s) 888, 2955
AloI GAACNNNNNNTCC 2 cut(s) 1518, 1550
Alw21I GWGCWC 8 cut(s) 371, 1260, 2263, 2278, 2505, 3291, 3603, 3798
Alw26I GTCTC 3 cut(s) 2225, 2239, 3090
Alw44I GTGCAC 2 cut(s) 367, 2501
AlwI GGATC 6 cut(s) 17, 107, 120, 458, 1614, 2989
Aor13HI TCCGGA 2 cut(s) 2701, 2791
AoxI GGCC 4 cut(s) 777, 3017, 3164, 3950
ApaI GGGCCC 1 cut(s) 3168
ApaLI GTGCAC 2 cut(s) 367, 2501
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AseI ATTAAT 1 cut(s) 543
AsiGI ACCGGT 1 cut(s) 2080
Asp700I GAANNNNTTC 4 cut(s) 272, 935, 1533, 2466
Asp718I GGTACC 1 cut(s) 1754
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 1 cut(s) 3238
AspS9I GGNCC 9 cut(s) 82, 161, 1175, 2509, 2638, 3018, 3164, 3165, 3854
AsuC2I CCSGG 2 cut(s) 468, 3828
AsuHPI GGTGA 9 cut(s) 74, 469, 902, 1423, 1522, 2095, 3079, 3472, 3665
AsuII TTCGAA 1 cut(s) 853
AsuNHI GCTAGC 1 cut(s) 1307
AvaII GGWCC 6 cut(s) 82, 161, 1175, 2509, 2638, 3854
AvrII CCTAGG 1 cut(s) 107
AxyI CCTNAGG 2 cut(s) 2329, 3947
BaeGI GKGCMC 3 cut(s) 371, 2505, 3168
BalI TGGCCA 1 cut(s) 779
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 1754
BanII GRGCYC 1 cut(s) 3168
BbsI GAAGAC 5 cut(s) 938, 1378, 1725, 2987, 3461
Bbv12I GWGCWC 8 cut(s) 371, 1260, 2263, 2278, 2505, 3291, 3603, 3798
BccI CCATC 9 cut(s) 124, 1156, 1384, 1673, 1816, 2381, 2562, 2654, 3326
BceAI ACGGC 1 cut(s) 1090
BcgI CGANNNNNNTGC 4 cut(s) 1084, 1118, 3227, 3261
BcnI CCSGG 2 cut(s) 468, 3828
BcoDI GTCTC 3 cut(s) 2225, 2239, 3090
BfmI CTRYAG 1 cut(s) 1684
BfrI CTTAAG 2 cut(s) 590, 3907
BglI GCCNNNNNGGC 1 cut(s) 2333
BglII AGATCT 2 cut(s) 3771, 3839
BlnI CCTAGG 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 468, 3828
Bme18I GGWCC 6 cut(s) 82, 161, 1175, 2509, 2638, 3854
BmeRI GACNNNNNGTC 1 cut(s) 2644
BmgT120I GGNCC 9 cut(s) 82, 161, 1175, 2509, 2638, 3018, 3164, 3165, 3854
BmiI GGNNCC 9 cut(s) 83, 84, 114, 162, 1176, 1756, 3165, 3166, 3340
BmrFI CCNGG 2 cut(s) 468, 3828
BmtI GCTAGC 1 cut(s) 1311
BoxI GACNNNNGTC 2 cut(s) 1925, 3066
BpiI GAAGAC 5 cut(s) 938, 1378, 1725, 2987, 3461
BplI GAGNNNNNCTC 2 cut(s) 862, 894
Bpu10I CCTNAGC 1 cut(s) 3261
Bpu14I TTCGAA 1 cut(s) 853
BpuEI CTTGAG 8 cut(s) 123, 204, 1142, 1151, 2391, 2954, 3454, 3617
BpuMI CCSGG 2 cut(s) 468, 3828
BsaAI YACGTR 1 cut(s) 3217
BsaBI GATNNNNATC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 3090
BsaJI CCNNGG 7 cut(s) 42, 107, 921, 954, 2198, 2741, 3826
BsaWI WCCGGW 3 cut(s) 2080, 2701, 2791
BsaXI ACNNNNNCTCC 4 cut(s) 1518, 1548, 2245, 2275
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 122, 158, 316, 1493, 1984
Bse118I RCCGGY 7 cut(s) 691, 1192, 1430, 2080, 2120, 2615, 3005
Bse21I CCTNAGG 2 cut(s) 2329, 3947
Bse3DI GCAATG 3 cut(s) 206, 1187, 2223
Bse8I GATNNNNATC 1 cut(s) 564
BseAI TCCGGA 2 cut(s) 2701, 2791
BseDI CCNNGG 7 cut(s) 42, 107, 921, 954, 2198, 2741, 3826
BseGI GGATG 6 cut(s) 367, 654, 748, 1876, 2710, 2860
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 6 cut(s) 32, 122, 158, 316, 1493, 1984
BseMI GCAATG 3 cut(s) 206, 1187, 2223
BseRI GAGGAG 5 cut(s) 168, 752, 1110, 1195, 2833
BseSI GKGCMC 3 cut(s) 371, 2505, 3168
BshFI GGCC 4 cut(s) 779, 3019, 3166, 3952
BshNI GGYRCC 1 cut(s) 1754
BshTI ACCGGT 1 cut(s) 2080
BsiHKAI GWGCWC 8 cut(s) 371, 1260, 2263, 2278, 2505, 3291, 3603, 3798
BslFI GGGAC 7 cut(s) 95, 1188, 1668, 2127, 2216, 2358, 2816
BslI CCNNNNNNNGG 6 cut(s) 32, 122, 158, 316, 1493, 1984
BsmAI GTCTC 3 cut(s) 2225, 2239, 3090
BsmFI GGGAC 7 cut(s) 95, 1188, 1668, 2127, 2216, 2358, 2816
BsmI GAATGC 2 cut(s) 383, 770
BsnI GGCC 4 cut(s) 779, 3019, 3166, 3952
Bso31I GGTCTC 1 cut(s) 3090
Bsp119I TTCGAA 1 cut(s) 853
Bsp120I GGGCCC 1 cut(s) 3164
Bsp1286I GDGCHC 9 cut(s) 371, 1260, 2263, 2278, 2505, 3168, 3291, 3603, 3798
Bsp13I TCCGGA 2 cut(s) 2701, 2791
Bsp1407I TGTACA 1 cut(s) 1474
Bsp19I CCATGG 3 cut(s) 42, 921, 2741
BspANI GGCC 4 cut(s) 779, 3019, 3166, 3952
BspEI TCCGGA 2 cut(s) 2701, 2791
BspHI TCATGA 3 cut(s) 1834, 2605, 3040
BspLI GGNNCC 9 cut(s) 83, 84, 114, 162, 1176, 1756, 3165, 3166, 3340
BspOI GCTAGC 1 cut(s) 1311
BspPI GGATC 6 cut(s) 17, 107, 120, 458, 1614, 2989
BspT104I TTCGAA 1 cut(s) 853
BspT107I GGYRCC 1 cut(s) 1754
BspTI CTTAAG 2 cut(s) 590, 3907
BspTNI GGTCTC 1 cut(s) 3090
BsrDI GCAATG 3 cut(s) 206, 1187, 2223
BsrFI RCCGGY 7 cut(s) 691, 1192, 1430, 2080, 2120, 2615, 3005
BsrGI TGTACA 1 cut(s) 1474
BssAI RCCGGY 7 cut(s) 691, 1192, 1430, 2080, 2120, 2615, 3005
BssECI CCNNGG 7 cut(s) 42, 107, 921, 954, 2198, 2741, 3826
BssT1I CCWWGG 6 cut(s) 42, 107, 921, 954, 2198, 2741
Bst4CI ACNGT 7 cut(s) 481, 829, 1507, 2722, 3460, 3518, 3858
Bst6I CTCTTC 5 cut(s) 885, 987, 1060, 1986, 2824
BstAFI CTTAAG 2 cut(s) 590, 3907
BstAPI GCANNNNNTGC 2 cut(s) 2192, 3576
BstAUI TGTACA 1 cut(s) 1474
BstBAI YACGTR 1 cut(s) 3217
BstBI TTCGAA 1 cut(s) 853
BstDSI CCRYGG 3 cut(s) 42, 921, 2741
BstENI CCTNNNNNAGG 1 cut(s) 1491
BstF5I GGATG 6 cut(s) 367, 654, 748, 1876, 2710, 2860
BstHHI GCGC 1 cut(s) 3238
BstMAI GTCTC 3 cut(s) 2225, 2239, 3090
BstMWI GCNNNNNNNGC 7 cut(s) 74, 776, 2192, 2333, 3509, 3576, 3614
BstNSI RCATGY 5 cut(s) 1081, 1639, 2120, 2372, 2841
BstPAI GACNNNNGTC 2 cut(s) 1925, 3066
BstSCI CCNGG 2 cut(s) 466, 3826
BstSFI CTRYAG 1 cut(s) 1684
BstSLI GKGCMC 3 cut(s) 371, 2505, 3168
BstV2I GAAGAC 5 cut(s) 938, 1378, 1725, 2987, 3461
BstX2I RGATCY 6 cut(s) 22, 112, 463, 2994, 3771, 3839
BstXI CCANNNNNNTGG 1 cut(s) 2957
BstYI RGATCY 6 cut(s) 22, 112, 463, 2994, 3771, 3839
Bsu36I CCTNAGG 2 cut(s) 2329, 3947
BsuRI GGCC 4 cut(s) 779, 3019, 3166, 3952
BtgI CCRYGG 3 cut(s) 42, 921, 2741
BtgZI GCGATG 2 cut(s) 533, 3926
BtsCI GGATG 6 cut(s) 367, 654, 748, 1876, 2710, 2860
CciI TCATGA 3 cut(s) 1834, 2605, 3040
CfoI GCGC 1 cut(s) 3238
Cfr10I RCCGGY 7 cut(s) 691, 1192, 1430, 2080, 2120, 2615, 3005
Cfr13I GGNCC 9 cut(s) 82, 161, 1175, 2509, 2638, 3018, 3164, 3165, 3854
Csp6I GTAC 7 cut(s) 1475, 1755, 2781, 3193, 3486, 3519, 3714
CspAI ACCGGT 1 cut(s) 2080
CviQI GTAC 7 cut(s) 1475, 1755, 2781, 3193, 3486, 3519, 3714
DraI TTTAAA 1 cut(s) 600
DriI GACNNNNNGTC 1 cut(s) 2644
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 5 cut(s) 885, 987, 1060, 1986, 2824
Eam1105I GACNNNNNGTC 1 cut(s) 2644
EarI CTCTTC 5 cut(s) 885, 987, 1060, 1986, 2824
EciI GGCGGA 2 cut(s) 635, 710
Eco130I CCWWGG 6 cut(s) 42, 107, 921, 954, 2198, 2741
Eco147I AGGCCT 1 cut(s) 3952
Eco24I GRGCYC 1 cut(s) 3168
Eco31I GGTCTC 1 cut(s) 3090
Eco32I GATATC 1 cut(s) 2160
Eco47I GGWCC 6 cut(s) 82, 161, 1175, 2509, 2638, 3854
Eco81I CCTNAGG 2 cut(s) 2329, 3947
EcoNI CCTNNNNNAGG 1 cut(s) 1491
EcoO109I RGGNCCY 4 cut(s) 82, 1175, 3164, 3165
EcoRI GAATTC 2 cut(s) 37, 3444
EcoRV GATATC 1 cut(s) 2160
EcoT14I CCWWGG 6 cut(s) 42, 107, 921, 954, 2198, 2741
EcoT22I ATGCAT 6 cut(s) 984, 1168, 1323, 1571, 2370, 2839
EcoT38I GRGCYC 1 cut(s) 3168
ErhI CCWWGG 6 cut(s) 42, 107, 921, 954, 2198, 2741
FaqI GGGAC 7 cut(s) 95, 1188, 1668, 2127, 2216, 2358, 2816
FauI CCCGC 3 cut(s) 1645, 3426, 3643
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 636
FokI GGATG 6 cut(s) 374, 661, 755, 1883, 2717, 2867
FriOI GRGCYC 1 cut(s) 3168
GlaI GCGC 1 cut(s) 3237
HaeIII GGCC 4 cut(s) 779, 3019, 3166, 3952
HhaI GCGC 1 cut(s) 3238
Hin6I GCGC 1 cut(s) 3236
HinP1I GCGC 1 cut(s) 3236
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 5 cut(s) 1211, 1418, 2104, 2214, 3812
HphI GGTGA 9 cut(s) 74, 469, 902, 1423, 1522, 2095, 3079, 3472, 3665
Hpy188I TCNGA 6 cut(s) 1453, 1581, 2320, 2472, 3249, 3557
HpyAV CCTTC 9 cut(s) 67, 348, 802, 1237, 1334, 1816, 3433, 3469, 3690
HpyCH4III ACNGT 7 cut(s) 481, 829, 1507, 2722, 3460, 3518, 3858
HpyCH4IV ACGT 2 cut(s) 1221, 3216
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 776, 2192, 2333, 3509, 3576, 3614
HpySE526I ACGT 2 cut(s) 1221, 3216
HspAI GCGC 1 cut(s) 3236
KflI GGGWCCC 1 cut(s) 82
Kpn2I TCCGGA 2 cut(s) 2701, 2791
KpnI GGTACC 1 cut(s) 1758
KroI GCCGGC 4 cut(s) 691, 2120, 2615, 3005
KroNI GCCGGC 4 cut(s) 693, 2122, 2617, 3007
MaeII ACGT 2 cut(s) 1221, 3216
MaeIII GTNAC 8 cut(s) 101, 1217, 1411, 1889, 2286, 2722, 3059, 3742
MflI RGATCY 6 cut(s) 22, 112, 463, 2994, 3771, 3839
MhlI GDGCHC 9 cut(s) 371, 1260, 2263, 2278, 2505, 3168, 3291, 3603, 3798
MlsI TGGCCA 1 cut(s) 779
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 3 cut(s) 2241, 2540, 3541
MmeI TCCRAC 7 cut(s) 297, 504, 1538, 1620, 3580, 3663, 3827
Mox20I TGGCCA 1 cut(s) 779
Mph1103I ATGCAT 6 cut(s) 984, 1168, 1323, 1571, 2370, 2839
MroI TCCGGA 2 cut(s) 2701, 2791
MroNI GCCGGC 4 cut(s) 691, 2120, 2615, 3005
MroXI GAANNNNTTC 4 cut(s) 272, 935, 1533, 2466
MscI TGGCCA 1 cut(s) 779
MslI CAYNNNNRTG 7 cut(s) 888, 1331, 2955, 2970, 3045, 3125, 3969
Msp20I TGGCCA 1 cut(s) 779
MspCI CTTAAG 2 cut(s) 590, 3907
MspR9I CCNGG 2 cut(s) 468, 3828
Mva1269I GAATGC 2 cut(s) 383, 770
MwoI GCNNNNNNNGC 7 cut(s) 74, 776, 2192, 2333, 3509, 3576, 3614
NaeI GCCGGC 4 cut(s) 693, 2122, 2617, 3007
NciI CCSGG 2 cut(s) 468, 3828
NcoI CCATGG 3 cut(s) 42, 921, 2741
NdeI CATATG 1 cut(s) 556
NgoMIV GCCGGC 4 cut(s) 691, 2120, 2615, 3005
NheI GCTAGC 1 cut(s) 1307
NlaIV GGNNCC 9 cut(s) 83, 84, 114, 162, 1176, 1756, 3165, 3166, 3340
NmeAIII GCCGAG 1 cut(s) 2495
NmuCI GTSAC 4 cut(s) 1217, 1411, 2286, 3059
NsiI ATGCAT 6 cut(s) 984, 1168, 1323, 1571, 2370, 2839
NspI RCATGY 5 cut(s) 1081, 1639, 2120, 2372, 2841
NspV TTCGAA 1 cut(s) 853
OliI CACNNNNGTG 2 cut(s) 888, 2955
PaeI GCATGC 2 cut(s) 1081, 2372
PagI TCATGA 3 cut(s) 1834, 2605, 3040
PceI AGGCCT 1 cut(s) 3952
PciI ACATGT 1 cut(s) 1635
PctI GAATGC 2 cut(s) 383, 770
PdiI GCCGGC 4 cut(s) 693, 2122, 2617, 3007
PdmI GAANNNNTTC 4 cut(s) 272, 935, 1533, 2466
PflMI CCANNNNNTGG 2 cut(s) 122, 1984
PinAI ACCGGT 1 cut(s) 2080
PleI GAGTC 3 cut(s) 2241, 2540, 3541
PpsI GAGTC 3 cut(s) 2241, 2540, 3541
Ppu21I YACGTR 1 cut(s) 3217
PpuMI RGGWCCY 2 cut(s) 82, 1175
PscI ACATGT 1 cut(s) 1635
PshAI GACNNNNGTC 2 cut(s) 1925, 3066
PshBI ATTAAT 1 cut(s) 543
Psp5II RGGWCCY 2 cut(s) 82, 1175
PspN4I GGNNCC 9 cut(s) 83, 84, 114, 162, 1176, 1756, 3165, 3166, 3340
PspOMI GGGCCC 1 cut(s) 3164
PspPI GGNCC 9 cut(s) 82, 161, 1175, 2509, 2638, 3018, 3164, 3165, 3854
PspPPI RGGWCCY 2 cut(s) 82, 1175
PsrI GAACNNNNNNTAC 2 cut(s) 1467, 1499
PsuI RGATCY 6 cut(s) 22, 112, 463, 2994, 3771, 3839
RsaI GTAC 7 cut(s) 1476, 1756, 2782, 3194, 3487, 3520, 3715
RsaNI GTAC 7 cut(s) 1475, 1755, 2781, 3193, 3486, 3519, 3714
RseI CAYNNNNRTG 7 cut(s) 888, 1331, 2955, 2970, 3045, 3125, 3969
Sau96I GGNCC 9 cut(s) 82, 161, 1175, 2509, 2638, 3018, 3164, 3165, 3854
SchI GAGTC 3 cut(s) 2241, 2540, 3541
ScrFI CCNGG 2 cut(s) 468, 3828
SduI GDGCHC 9 cut(s) 371, 1260, 2263, 2278, 2505, 3168, 3291, 3603, 3798
SfcI CTRYAG 1 cut(s) 1684
SfuI TTCGAA 1 cut(s) 853
SgrAI CRCCGGYG 1 cut(s) 2080
SinI GGWCC 6 cut(s) 82, 161, 1175, 2509, 2638, 3854
SmiMI CAYNNNNRTG 7 cut(s) 888, 1331, 2955, 2970, 3045, 3125, 3969
SphI GCATGC 2 cut(s) 1081, 2372
SseBI AGGCCT 1 cut(s) 3952
SspI AATATT 1 cut(s) 2929
StuI AGGCCT 1 cut(s) 3952
StyD4I CCNGG 2 cut(s) 466, 3826
StyI CCWWGG 6 cut(s) 42, 107, 921, 954, 2198, 2741
TaaI ACNGT 7 cut(s) 481, 829, 1507, 2722, 3460, 3518, 3858
TaiI ACGT 2 cut(s) 1224, 3219
TaqI TCGA 4 cut(s) 568, 853, 1899, 2131
TaqII GACCGA 2 cut(s) 1859, 3078
TatI WGTACW 2 cut(s) 1474, 3192
TseFI GTSAC 4 cut(s) 1217, 1411, 2286, 3059
Tsp45I GTSAC 4 cut(s) 1217, 1411, 2286, 3059
TspGWI ACGGA 3 cut(s) 206, 2441, 2522
Van91I CCANNNNNTGG 2 cut(s) 122, 1984
Vha464I CTTAAG 2 cut(s) 590, 3907
VneI GTGCAC 2 cut(s) 367, 2501
VpaK11BI GGWCC 6 cut(s) 82, 161, 1175, 2509, 2638, 3854
VspI ATTAAT 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 1491
XbaI TCTAGA 6 cut(s) 8, 181, 1355, 1423, 3092, 3448
XceI RCATGY 5 cut(s) 1081, 1639, 2120, 2372, 2841
XcmI CCANNNNNNNNNTGG 1 cut(s) 2957
XmaJI CCTAGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 636
XmnI GAANNNNTTC 4 cut(s) 272, 935, 1533, 2466
Zsp2I ATGCAT 6 cut(s) 984, 1168, 1323, 1571, 2370, 2839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.