transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 105 - 164 | 4.8e-09 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1783 |
| AatII | GACGTC | 1 cut(s) | 1224 |
| Acc16I | TGCGCA | 1 cut(s) | 2043 |
| Acc36I | ACCTGC | 1 cut(s) | 1783 |
| AccB1I | GGYRCC | 2 cut(s) | 699, 2498 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 92, 2101, 2430 |
| AccII | CGCG | 1 cut(s) | 334 |
| AciI | CCGC | 2 cut(s) | 334, 2114 |
| AclWI | GGATC | 4 cut(s) | 1301, 1616, 1629, 2385 |
| AcsI | RAATTY | 5 cut(s) | 191, 1024, 1508, 1664, 1820 |
| AcuI | CTGAAG | 1 cut(s) | 2247 |
| AcvI | CACGTG | 1 cut(s) | 1547 |
| AcyI | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| AfaI | GTAC | 7 cut(s) | 776, 797, 1338, 1502, 2216, 2271, 2414 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 92, 443, 1003, 1240, 1264, 1320, 2101, 2430 |
| AflII | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| AflIII | ACRYGT | 2 cut(s) | 792, 1544 |
| AjiI | CACGTC | 1 cut(s) | 887 |
| AjnI | CCWGG | 2 cut(s) | 1002, 1624 |
| Alw21I | GWGCWC | 2 cut(s) | 689, 1529 |
| Alw26I | GTCTC | 5 cut(s) | 639, 1531, 1585, 2325, 2333 |
| Alw44I | GTGCAC | 1 cut(s) | 1525 |
| AlwI | GGATC | 4 cut(s) | 1301, 1616, 1629, 2385 |
| AoxI | GGCC | 6 cut(s) | 655, 908, 993, 1254, 2181, 2274 |
| ApaLI | GTGCAC | 1 cut(s) | 1525 |
| ApeKI | GCWGC | 3 cut(s) | 56, 518, 521 |
| ApoI | RAATTY | 5 cut(s) | 191, 1024, 1508, 1664, 1820 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1160, 1192 |
| AseI | ATTAAT | 1 cut(s) | 1701 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1782 |
| AspLEI | GCGC | 1 cut(s) | 2044 |
| AspS9I | GGNCC | 6 cut(s) | 531, 814, 834, 994, 1255, 2275 |
| AsuHPI | GGTGA | 7 cut(s) | 460, 959, 1754, 1807, 1839, 1961, 2083 |
| AvaII | GGWCC | 3 cut(s) | 531, 814, 834 |
| AxyI | CCTNAGG | 3 cut(s) | 347, 891, 912 |
| BaeGI | GKGCMC | 3 cut(s) | 437, 702, 1529 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1320, 1353 |
| BamHI | GGATCC | 1 cut(s) | 1621 |
| BanI | GGYRCC | 2 cut(s) | 699, 2498 |
| BauI | CACGAG | 1 cut(s) | 1422 |
| BbrPI | CACGTG | 1 cut(s) | 1547 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 2 cut(s) | 689, 1529 |
| BbvI | GCAGC | 3 cut(s) | 43, 505, 533 |
| BccI | CCATC | 9 cut(s) | 86, 735, 825, 1487, 1809, 1940, 2096, 2111, 2424 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2008, 2042 |
| BciT130I | CCWGG | 2 cut(s) | 1004, 1626 |
| BciVI | GTATCC | 4 cut(s) | 360, 1998, 2099, 2475 |
| BclI | TGATCA | 3 cut(s) | 709, 1471, 2169 |
| BcoDI | GTCTC | 5 cut(s) | 639, 1531, 1585, 2325, 2333 |
| BfaI | CTAG | 5 cut(s) | 1320, 1682, 1688, 1733, 2369 |
| BfmI | CTRYAG | 2 cut(s) | 519, 1815 |
| BfrI | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| BfuAI | ACCTGC | 1 cut(s) | 1783 |
| BfuI | GTATCC | 4 cut(s) | 360, 1998, 2099, 2475 |
| BglII | AGATCT | 2 cut(s) | 1488, 1684 |
| BisI | GCNGC | 3 cut(s) | 57, 519, 522 |
| BlpI | GCTNAGC | 1 cut(s) | 1077 |
| BlsI | GCNGC | 3 cut(s) | 58, 520, 523 |
| Bme1390I | CCNGG | 2 cut(s) | 1004, 1626 |
| Bme18I | GGWCC | 3 cut(s) | 531, 814, 834 |
| BmgBI | CACGTC | 1 cut(s) | 887 |
| BmgT120I | GGNCC | 6 cut(s) | 531, 814, 834, 994, 1255, 2275 |
| BmiI | GGNNCC | 9 cut(s) | 461, 532, 701, 815, 877, 918, 1623, 2277, 2500 |
| BmrFI | CCNGG | 2 cut(s) | 1004, 1626 |
| BmrI | ACTGGG | 1 cut(s) | 1431 |
| BmsI | GCATC | 8 cut(s) | 78, 190, 505, 975, 1703, 1736, 2047, 2463 |
| BmuI | ACTGGG | 1 cut(s) | 1431 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2185, 2217 |
| BpmI | CTGGAG | 1 cut(s) | 546 |
| Bpu10I | CCTNAGC | 3 cut(s) | 561, 809, 1214 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1077 |
| BpuEI | CTTGAG | 6 cut(s) | 620, 678, 1010, 1017, 2210, 2306 |
| BsaAI | YACGTR | 2 cut(s) | 795, 1547 |
| BsaHI | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| BsaJI | CCNNGG | 4 cut(s) | 1003, 1625, 1935, 2095 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 92, 443, 1003, 1240, 1264, 1320, 2101, 2430 |
| Bse1I | ACTGG | 2 cut(s) | 196, 1437 |
| Bse21I | CCTNAGG | 3 cut(s) | 347, 891, 912 |
| Bse3DI | GCAATG | 4 cut(s) | 927, 1986, 2067, 2342 |
| BseBI | CCWGG | 2 cut(s) | 1004, 1626 |
| BseDI | CCNNGG | 4 cut(s) | 1003, 1625, 1935, 2095 |
| BseGI | GGATG | 8 cut(s) | 240, 453, 746, 817, 1273, 1468, 2122, 2435 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 92, 443, 1003, 1240, 1264, 1320, 2101, 2430 |
| BseMI | GCAATG | 4 cut(s) | 927, 1986, 2067, 2342 |
| BseMII | CTCAG | 9 cut(s) | 543, 606, 650, 905, 926, 1068, 1119, 1341, 1596 |
| BseNI | ACTGG | 2 cut(s) | 196, 1437 |
| BseRI | GAGGAG | 2 cut(s) | 66, 1277 |
| BseSI | GKGCMC | 3 cut(s) | 437, 702, 1529 |
| BseXI | GCAGC | 3 cut(s) | 43, 505, 533 |
| BseYI | CCCAGC | 1 cut(s) | 325 |
| BsgI | GTGCAG | 1 cut(s) | 1811 |
| Bsh1236I | CGCG | 1 cut(s) | 334 |
| BshFI | GGCC | 6 cut(s) | 657, 910, 995, 1256, 2183, 2276 |
| BshNI | GGYRCC | 2 cut(s) | 699, 2498 |
| BsiHKAI | GWGCWC | 2 cut(s) | 689, 1529 |
| BslFI | GGGAC | 6 cut(s) | 498, 827, 1110, 1208, 1232, 1939 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 92, 443, 1003, 1240, 1264, 1320, 2101, 2430 |
| BsmAI | GTCTC | 5 cut(s) | 639, 1531, 1585, 2325, 2333 |
| BsmFI | GGGAC | 6 cut(s) | 498, 827, 1110, 1208, 1232, 1939 |
| BsmI | GAATGC | 2 cut(s) | 232, 257 |
| BsnI | GGCC | 6 cut(s) | 657, 910, 995, 1256, 2183, 2276 |
| Bsp1286I | GDGCHC | 4 cut(s) | 437, 689, 702, 1529 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1077 |
| Bsp19I | CCATGG | 1 cut(s) | 1935 |
| BspACI | CCGC | 2 cut(s) | 334, 2114 |
| BspANI | GGCC | 6 cut(s) | 657, 910, 995, 1256, 2183, 2276 |
| BspCNI | CTCAG | 9 cut(s) | 544, 605, 649, 904, 925, 1069, 1120, 1342, 1595 |
| BspFNI | CGCG | 1 cut(s) | 334 |
| BspHI | TCATGA | 1 cut(s) | 1887 |
| BspLI | GGNNCC | 9 cut(s) | 461, 532, 701, 815, 877, 918, 1623, 2277, 2500 |
| BspMAI | CTGCAG | 2 cut(s) | 523, 1819 |
| BspMI | ACCTGC | 1 cut(s) | 1783 |
| BspPI | GGATC | 4 cut(s) | 1301, 1616, 1629, 2385 |
| BspT107I | GGYRCC | 2 cut(s) | 699, 2498 |
| BspTI | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| BsrDI | GCAATG | 4 cut(s) | 927, 1986, 2067, 2342 |
| BsrI | ACTGG | 2 cut(s) | 196, 1437 |
| BssECI | CCNNGG | 4 cut(s) | 1003, 1625, 1935, 2095 |
| BssNI | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| BssSI | CACGAG | 1 cut(s) | 1422 |
| BssT1I | CCWWGG | 2 cut(s) | 1935, 2095 |
| Bst2BI | CACGAG | 1 cut(s) | 1422 |
| Bst2UI | CCWGG | 2 cut(s) | 1004, 1626 |
| Bst4CI | ACNGT | 3 cut(s) | 343, 1579, 2179 |
| Bst6I | CTCTTC | 2 cut(s) | 113, 2226 |
| BstACI | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| BstAFI | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| BstBAI | YACGTR | 2 cut(s) | 795, 1547 |
| BstDSI | CCRYGG | 1 cut(s) | 1935 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| BstF5I | GGATG | 8 cut(s) | 240, 453, 746, 817, 1273, 1468, 2122, 2435 |
| BstFNI | CGCG | 1 cut(s) | 334 |
| BstHHI | GCGC | 1 cut(s) | 2044 |
| BstMAI | GTCTC | 5 cut(s) | 639, 1531, 1585, 2325, 2333 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1087 |
| BstNI | CCWGG | 2 cut(s) | 1004, 1626 |
| BstNSI | RCATGY | 2 cut(s) | 69, 2472 |
| BstSCI | CCNGG | 2 cut(s) | 1002, 1624 |
| BstSFI | CTRYAG | 2 cut(s) | 519, 1815 |
| BstSLI | GKGCMC | 3 cut(s) | 437, 702, 1529 |
| BstUI | CGCG | 1 cut(s) | 334 |
| BstV1I | GCAGC | 3 cut(s) | 43, 505, 533 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BstX2I | RGATCY | 3 cut(s) | 1488, 1621, 1684 |
| BstYI | RGATCY | 3 cut(s) | 1488, 1621, 1684 |
| Bsu36I | CCTNAGG | 3 cut(s) | 347, 891, 912 |
| BsuI | GTATCC | 4 cut(s) | 360, 1998, 2099, 2475 |
| BsuRI | GGCC | 6 cut(s) | 657, 910, 995, 1256, 2183, 2276 |
| BtgI | CCRYGG | 1 cut(s) | 1935 |
| BtrI | CACGTC | 1 cut(s) | 887 |
| BtsCI | GGATG | 8 cut(s) | 240, 453, 746, 817, 1273, 1468, 2122, 2435 |
| BtsI | GCAGTG | 1 cut(s) | 2109 |
| BtsIMutI | CAGTG | 2 cut(s) | 2109, 2271 |
| BveI | ACCTGC | 1 cut(s) | 1783 |
| CciI | TCATGA | 1 cut(s) | 1887 |
| CfoI | GCGC | 1 cut(s) | 2044 |
| Cfr13I | GGNCC | 6 cut(s) | 531, 814, 834, 994, 1255, 2275 |
| CseI | GACGC | 4 cut(s) | 179, 417, 1868, 2110 |
| Csp6I | GTAC | 7 cut(s) | 775, 796, 1337, 1501, 2215, 2270, 2413 |
| CviQI | GTAC | 7 cut(s) | 775, 796, 1337, 1501, 2215, 2270, 2413 |
| Eam1104I | CTCTTC | 2 cut(s) | 113, 2226 |
| EarI | CTCTTC | 2 cut(s) | 113, 2226 |
| Eco130I | CCWWGG | 2 cut(s) | 1935, 2095 |
| Eco147I | AGGCCT | 1 cut(s) | 910 |
| Eco32I | GATATC | 2 cut(s) | 1125, 2446 |
| Eco47I | GGWCC | 3 cut(s) | 531, 814, 834 |
| Eco57I | CTGAAG | 1 cut(s) | 2247 |
| Eco72I | CACGTG | 1 cut(s) | 1547 |
| Eco81I | CCTNAGG | 3 cut(s) | 347, 891, 912 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| EcoO109I | RGGNCCY | 3 cut(s) | 531, 994, 2275 |
| EcoRI | GAATTC | 2 cut(s) | 191, 1820 |
| EcoRII | CCWGG | 2 cut(s) | 1002, 1624 |
| EcoRV | GATATC | 2 cut(s) | 1125, 2446 |
| EcoT14I | CCWWGG | 2 cut(s) | 1935, 2095 |
| EcoT22I | ATGCAT | 2 cut(s) | 71, 1729 |
| ErhI | CCWWGG | 2 cut(s) | 1935, 2095 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1770, 1802 |
| FaqI | GGGAC | 6 cut(s) | 498, 827, 1110, 1208, 1232, 1939 |
| FauI | CCCGC | 1 cut(s) | 327 |
| FbaI | TGATCA | 3 cut(s) | 709, 1471, 2169 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 519, 522 |
| FokI | GGATG | 8 cut(s) | 227, 460, 753, 804, 1280, 1475, 2129, 2442 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 519, 522 |
| FspBI | CTAG | 5 cut(s) | 1320, 1682, 1688, 1733, 2369 |
| FspI | TGCGCA | 1 cut(s) | 2043 |
| GlaI | GCGC | 1 cut(s) | 2043 |
| GluI | GCNGC | 3 cut(s) | 57, 519, 522 |
| GsaI | CCCAGC | 1 cut(s) | 329 |
| GsuI | CTGGAG | 1 cut(s) | 546 |
| HaeIII | GGCC | 6 cut(s) | 657, 910, 995, 1256, 2183, 2276 |
| HgaI | GACGC | 4 cut(s) | 179, 417, 1868, 2110 |
| HhaI | GCGC | 1 cut(s) | 2044 |
| Hin1I | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| Hin6I | GCGC | 1 cut(s) | 2042 |
| HinP1I | GCGC | 1 cut(s) | 2042 |
| HincII | GTYRAC | 2 cut(s) | 1052, 1108 |
| HindII | GTYRAC | 2 cut(s) | 1052, 1108 |
| HindIII | AAGCTT | 1 cut(s) | 1139 |
| HphI | GGTGA | 7 cut(s) | 460, 959, 1754, 1807, 1839, 1961, 2083 |
| Hpy166II | GTNNAC | 5 cut(s) | 1052, 1108, 1527, 1798, 2217 |
| Hpy188I | TCNGA | 9 cut(s) | 18, 855, 906, 1129, 1351, 1471, 1806, 1999, 2085 |
| Hpy188III | TCNNGA | 7 cut(s) | 272, 415, 497, 1594, 1733, 1888, 2381 |
| Hpy8I | GTNNAC | 5 cut(s) | 1052, 1108, 1527, 1798, 2217 |
| Hpy99I | CGWCG | 1 cut(s) | 433 |
| HpyCH4III | ACNGT | 3 cut(s) | 343, 1579, 2179 |
| HpyCH4IV | ACGT | 4 cut(s) | 794, 886, 1221, 1546 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1087 |
| HpySE526I | ACGT | 4 cut(s) | 794, 886, 1221, 1546 |
| Hsp92I | GRCGYC | 5 cut(s) | 171, 428, 1221, 1879, 2121 |
| HspAI | GCGC | 1 cut(s) | 2042 |
| Ksp22I | TGATCA | 3 cut(s) | 709, 1471, 2169 |
| LmnI | GCTCC | 5 cut(s) | 53, 401, 565, 875, 937 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 505, 533 |
| LweI | GCATC | 8 cut(s) | 78, 190, 505, 975, 1703, 1736, 2047, 2463 |
| MaeI | CTAG | 5 cut(s) | 1320, 1682, 1688, 1733, 2369 |
| MaeII | ACGT | 4 cut(s) | 794, 886, 1221, 1546 |
| MaeIII | GTNAC | 5 cut(s) | 337, 1042, 1373, 2122, 2295 |
| MfeI | CAATTG | 2 cut(s) | 29, 506 |
| MflI | RGATCY | 3 cut(s) | 1488, 1621, 1684 |
| MhlI | GDGCHC | 4 cut(s) | 437, 689, 702, 1529 |
| MlyI | GAGTC | 3 cut(s) | 755, 1184, 1838 |
| MmeI | TCCRAC | 3 cut(s) | 812, 813, 1747 |
| Mph1103I | ATGCAT | 2 cut(s) | 71, 1729 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1782 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1835 |
| MspA1I | CMGCKG | 2 cut(s) | 89, 524 |
| MspCI | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| MspR9I | CCNGG | 2 cut(s) | 1004, 1626 |
| MunI | CAATTG | 2 cut(s) | 29, 506 |
| Mva1269I | GAATGC | 2 cut(s) | 232, 257 |
| MvaI | CCWGG | 2 cut(s) | 1004, 1626 |
| MvnI | CGCG | 1 cut(s) | 334 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1087 |
| NcoI | CCATGG | 1 cut(s) | 1935 |
| NlaIV | GGNNCC | 9 cut(s) | 461, 532, 701, 815, 877, 918, 1623, 2277, 2500 |
| NmuCI | GTSAC | 1 cut(s) | 2122 |
| NsbI | TGCGCA | 1 cut(s) | 2043 |
| NsiI | ATGCAT | 2 cut(s) | 71, 1729 |
| NspI | RCATGY | 2 cut(s) | 69, 2472 |
| PagI | TCATGA | 1 cut(s) | 1887 |
| PaqCI | CACCTGC | 1 cut(s) | 1783 |
| PceI | AGGCCT | 1 cut(s) | 910 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2015 |
| PctI | GAATGC | 2 cut(s) | 232, 257 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1782 |
| PfeI | GAWTC | 7 cut(s) | 13, 386, 764, 865, 1466, 2000, 2033 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 92, 2101, 2430 |
| PkrI | GCNGC | 3 cut(s) | 58, 520, 523 |
| PleI | GAGTC | 3 cut(s) | 754, 1183, 1838 |
| PmaCI | CACGTG | 1 cut(s) | 1547 |
| PmlI | CACGTG | 1 cut(s) | 1547 |
| PpsI | GAGTC | 3 cut(s) | 754, 1183, 1838 |
| Ppu21I | YACGTR | 2 cut(s) | 795, 1547 |
| PpuMI | RGGWCCY | 1 cut(s) | 531 |
| PshBI | ATTAAT | 1 cut(s) | 1701 |
| Psp5II | RGGWCCY | 1 cut(s) | 531 |
| Psp6I | CCWGG | 2 cut(s) | 1002, 1624 |
| PspCI | CACGTG | 1 cut(s) | 1547 |
| PspFI | CCCAGC | 1 cut(s) | 325 |
| PspGI | CCWGG | 2 cut(s) | 1002, 1624 |
| PspN4I | GGNNCC | 9 cut(s) | 461, 532, 701, 815, 877, 918, 1623, 2277, 2500 |
| PspPI | GGNCC | 6 cut(s) | 531, 814, 834, 994, 1255, 2275 |
| PspPPI | RGGWCCY | 1 cut(s) | 531 |
| PstI | CTGCAG | 2 cut(s) | 523, 1819 |
| PsuI | RGATCY | 3 cut(s) | 1488, 1621, 1684 |
| PvuII | CAGCTG | 2 cut(s) | 89, 524 |
| RsaI | GTAC | 7 cut(s) | 776, 797, 1338, 1502, 2216, 2271, 2414 |
| RsaNI | GTAC | 7 cut(s) | 775, 796, 1337, 1501, 2215, 2270, 2413 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1835 |
| SatI | GCNGC | 3 cut(s) | 57, 519, 522 |
| Sau96I | GGNCC | 6 cut(s) | 531, 814, 834, 994, 1255, 2275 |
| SchI | GAGTC | 3 cut(s) | 755, 1184, 1838 |
| ScrFI | CCNGG | 2 cut(s) | 1004, 1626 |
| SduI | GDGCHC | 4 cut(s) | 437, 689, 702, 1529 |
| SfaNI | GCATC | 8 cut(s) | 78, 190, 505, 975, 1703, 1736, 2047, 2463 |
| SfcI | CTRYAG | 2 cut(s) | 519, 1815 |
| SinI | GGWCC | 3 cut(s) | 531, 814, 834 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1835 |
| SmlI | CTYRAG | 9 cut(s) | 599, 693, 989, 1032, 1082, 1616, 1748, 2189, 2285 |
| SmoI | CTYRAG | 9 cut(s) | 599, 693, 989, 1032, 1082, 1616, 1748, 2189, 2285 |
| SseBI | AGGCCT | 1 cut(s) | 910 |
| SsiI | CCGC | 2 cut(s) | 334, 2114 |
| SspMI | CTAG | 5 cut(s) | 1320, 1682, 1688, 1733, 2369 |
| StuI | AGGCCT | 1 cut(s) | 910 |
| StyD4I | CCNGG | 2 cut(s) | 1002, 1624 |
| StyI | CCWWGG | 2 cut(s) | 1935, 2095 |
| TaaI | ACNGT | 3 cut(s) | 343, 1579, 2179 |
| TaiI | ACGT | 4 cut(s) | 797, 889, 1224, 1549 |
| TaqI | TCGA | 2 cut(s) | 1944, 2018 |
| TatI | WGTACW | 1 cut(s) | 2412 |
| TfiI | GAWTC | 7 cut(s) | 13, 386, 764, 865, 1466, 2000, 2033 |
| TscAI | CASTG | 2 cut(s) | 2116, 2271 |
| TseFI | GTSAC | 1 cut(s) | 2122 |
| TseI | GCWGC | 3 cut(s) | 56, 518, 521 |
| Tsp45I | GTSAC | 1 cut(s) | 2122 |
| TspGWI | ACGGA | 2 cut(s) | 857, 1915 |
| TspRI | CASTG | 2 cut(s) | 2116, 2271 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 92, 2101, 2430 |
| Vha464I | CTTAAG | 3 cut(s) | 1082, 1616, 1748 |
| VneI | GTGCAC | 1 cut(s) | 1525 |
| VpaK11BI | GGWCC | 3 cut(s) | 531, 814, 834 |
| VspI | ATTAAT | 1 cut(s) | 1701 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1001 |
| XapI | RAATTY | 5 cut(s) | 191, 1024, 1508, 1664, 1820 |
| XbaI | TCTAGA | 1 cut(s) | 1732 |
| XceI | RCATGY | 2 cut(s) | 69, 2472 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 203, 869, 2140 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1782 |
| XspI | CTAG | 5 cut(s) | 1320, 1682, 1688, 1733, 2369 |
| ZraI | GACGTC | 1 cut(s) | 1222 |
| Zsp2I | ATGCAT | 2 cut(s) | 71, 1729 |