transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 124 |
| AccIII | TCCGGA | 1 cut(s) | 151 |
| AciI | CCGC | 1 cut(s) | 146 |
| AclWI | GGATC | 1 cut(s) | 162 |
| AcuI | CTGAAG | 1 cut(s) | 96 |
| AdeI | CACNNNGTG | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 375 |
| AflIII | ACRYGT | 1 cut(s) | 314 |
| AgsI | TTSAA | 3 cut(s) | 137, 163, 213 |
| AlwI | GGATC | 1 cut(s) | 162 |
| Aor13HI | TCCGGA | 1 cut(s) | 151 |
| AoxI | GGCC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 1 cut(s) | 367 |
| AsuHPI | GGTGA | 1 cut(s) | 13 |
| BanI | GGYRCC | 1 cut(s) | 124 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| BccI | CCATC | 3 cut(s) | 113, 206, 273 |
| BfaI | CTAG | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 1 cut(s) | 367 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 1 cut(s) | 151 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 375 |
| Bse3DI | GCAATG | 1 cut(s) | 61 |
| BseAI | TCCGGA | 1 cut(s) | 151 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 3 cut(s) | 105, 253, 284 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 375 |
| BseMI | GCAATG | 1 cut(s) | 61 |
| BseMII | CTCAG | 1 cut(s) | 245 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BshNI | GGYRCC | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 375 |
| BsnI | GGCC | 1 cut(s) | 368 |
| Bsp13I | TCCGGA | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 154 |
| Bsp19I | CCATGG | 1 cut(s) | 27 |
| BspACI | CCGC | 1 cut(s) | 146 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspCNI | CTCAG | 1 cut(s) | 246 |
| BspEI | TCCGGA | 1 cut(s) | 151 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspPI | GGATC | 1 cut(s) | 162 |
| BspT107I | GGYRCC | 1 cut(s) | 124 |
| BsrDI | GCAATG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 2 cut(s) | 223, 361 |
| BstDEI | CTNAG | 1 cut(s) | 254 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstF5I | GGATG | 3 cut(s) | 105, 253, 284 |
| BstKTI | GATC | 1 cut(s) | 157 |
| BstMBI | GATC | 1 cut(s) | 154 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| BtsCI | GGATG | 3 cut(s) | 105, 253, 284 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 1 cut(s) | 367 |
| Csp6I | GTAC | 1 cut(s) | 251 |
| CviAII | CATG | 1 cut(s) | 28 |
| CviJI | RGCY | 3 cut(s) | 40, 309, 368 |
| CviKI_1 | RGCY | 3 cut(s) | 40, 309, 368 |
| CviQI | GTAC | 1 cut(s) | 251 |
| DdeI | CTNAG | 1 cut(s) | 254 |
| DpnI | GATC | 1 cut(s) | 156 |
| DpnII | GATC | 1 cut(s) | 154 |
| DraIII | CACNNNGTG | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco32I | GATATC | 1 cut(s) | 295 |
| Eco57I | CTGAAG | 1 cut(s) | 96 |
| EcoRV | GATATC | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 1 cut(s) | 31 |
| FaiI | YATR | 2 cut(s) | 29, 168 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FatI | CATG | 1 cut(s) | 27 |
| FokI | GGATG | 3 cut(s) | 92, 260, 291 |
| FspBI | CTAG | 1 cut(s) | 51 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HapII | CCGG | 1 cut(s) | 152 |
| Hin1II | CATG | 1 cut(s) | 31 |
| HinfI | GANTC | 1 cut(s) | 118 |
| HpaII | CCGG | 1 cut(s) | 152 |
| HphI | GGTGA | 1 cut(s) | 13 |
| Hpy166II | GTNNAC | 2 cut(s) | 219, 325 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 219, 325 |
| HpyAV | CCTTC | 2 cut(s) | 120, 338 |
| HpyCH4III | ACNGT | 2 cut(s) | 223, 361 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyF3I | CTNAG | 1 cut(s) | 254 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Hsp92II | CATG | 1 cut(s) | 31 |
| Kpn2I | TCCGGA | 1 cut(s) | 151 |
| Kzo9I | GATC | 1 cut(s) | 154 |
| LpnPI | CCDG | 2 cut(s) | 107, 165 |
| MaeI | CTAG | 1 cut(s) | 51 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 1 cut(s) | 156 |
| MboI | GATC | 1 cut(s) | 154 |
| MboII | GAAGA | 1 cut(s) | 201 |
| MluCI | AATT | 2 cut(s) | 81, 303 |
| MnlI | CCTC | 4 cut(s) | 249, 334, 358, 369 |
| MroI | TCCGGA | 1 cut(s) | 151 |
| MseI | TTAA | 2 cut(s) | 141, 237 |
| MslI | CAYNNNNRTG | 2 cut(s) | 26, 203 |
| MspI | CCGG | 1 cut(s) | 152 |
| NcoI | CCATGG | 1 cut(s) | 27 |
| NdeII | GATC | 1 cut(s) | 154 |
| NlaIII | CATG | 1 cut(s) | 31 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 367 |
| RsaI | GTAC | 1 cut(s) | 252 |
| RsaNI | GTAC | 1 cut(s) | 251 |
| RseI | CAYNNNNRTG | 2 cut(s) | 26, 203 |
| SaqAI | TTAA | 2 cut(s) | 141, 237 |
| Sau3AI | GATC | 1 cut(s) | 154 |
| Sau96I | GGNCC | 1 cut(s) | 367 |
| SetI | ASST | 5 cut(s) | 12, 130, 194, 319, 380 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 26, 203 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| Sse9I | AATT | 2 cut(s) | 81, 303 |
| SsiI | CCGC | 1 cut(s) | 146 |
| SspMI | CTAG | 1 cut(s) | 51 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 2 cut(s) | 223, 361 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TasI | AATT | 2 cut(s) | 81, 303 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TfiI | GAWTC | 1 cut(s) | 118 |
| Tru1I | TTAA | 2 cut(s) | 141, 237 |
| Tru9I | TTAA | 2 cut(s) | 141, 237 |
| TscAI | CASTG | 1 cut(s) | 120 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 120 |
| XspI | CTAG | 1 cut(s) | 51 |