Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 427 |
| AclWI | GGATC | 1 cut(s) | 569 |
| AcsI | RAATTY | 1 cut(s) | 422 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 15, 178 |
| AgsI | TTSAA | 5 cut(s) | 32, 130, 218, 256, 317 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 580, 612 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| Alw21I | GWGCWC | 1 cut(s) | 529 |
| AlwI | GGATC | 1 cut(s) | 569 |
| Aor13HI | TCCGGA | 1 cut(s) | 427 |
| ApeKI | GCWGC | 2 cut(s) | 248, 704 |
| ApoI | RAATTY | 1 cut(s) | 422 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AsuII | TTCGAA | 1 cut(s) | 692 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| BauI | CACGAG | 1 cut(s) | 522 |
| Bbv12I | GWGCWC | 1 cut(s) | 529 |
| BbvI | GCAGC | 2 cut(s) | 235, 691 |
| BccI | CCATC | 2 cut(s) | 294, 596 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BfaI | CTAG | 5 cut(s) | 191, 288, 491, 498, 745 |
| BisI | GCNGC | 2 cut(s) | 249, 705 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlpI | GCTNAGC | 1 cut(s) | 555 |
| BlsI | GCNGC | 2 cut(s) | 250, 706 |
| BmsI | GCATC | 3 cut(s) | 34, 56, 715 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 555 |
| Bpu14I | TTCGAA | 1 cut(s) | 692 |
| BpuEI | CTTGAG | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 3 cut(s) | 177, 287, 464 |
| BsaWI | WCCGGW | 2 cut(s) | 427, 736 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 15, 178 |
| BseAI | TCCGGA | 1 cut(s) | 427 |
| BseDI | CCNNGG | 3 cut(s) | 177, 287, 464 |
| BseGI | GGATG | 3 cut(s) | 406, 436, 577 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 15, 178 |
| BseMII | CTCAG | 3 cut(s) | 150, 368, 624 |
| BseRI | GAGGAG | 2 cut(s) | 410, 431 |
| BseXI | GCAGC | 2 cut(s) | 235, 691 |
| BsiHKAI | GWGCWC | 1 cut(s) | 529 |
| BsiSI | CCGG | 2 cut(s) | 428, 737 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 15, 178 |
| Bsp119I | TTCGAA | 1 cut(s) | 692 |
| Bsp1286I | GDGCHC | 1 cut(s) | 529 |
| Bsp13I | TCCGGA | 1 cut(s) | 427 |
| Bsp143I | GATC | 1 cut(s) | 574 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 555 |
| BspCNI | CTCAG | 3 cut(s) | 151, 369, 625 |
| BspEI | TCCGGA | 1 cut(s) | 427 |
| BspPI | GGATC | 1 cut(s) | 569 |
| BspT104I | TTCGAA | 1 cut(s) | 692 |
| BssECI | CCNNGG | 3 cut(s) | 177, 287, 464 |
| BssMI | GATC | 1 cut(s) | 574 |
| BssSI | CACGAG | 1 cut(s) | 522 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 464 |
| Bst2BI | CACGAG | 1 cut(s) | 522 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 446 |
| BstBI | TTCGAA | 1 cut(s) | 692 |
| BstDEI | CTNAG | 5 cut(s) | 159, 377, 412, 555, 633 |
| BstDSI | CCRYGG | 1 cut(s) | 177 |
| BstF5I | GGATG | 3 cut(s) | 406, 436, 577 |
| BstKTI | GATC | 1 cut(s) | 577 |
| BstMBI | GATC | 1 cut(s) | 574 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 65 |
| BstV1I | GCAGC | 2 cut(s) | 235, 691 |
| BtgI | CCRYGG | 1 cut(s) | 177 |
| BtsCI | GGATG | 3 cut(s) | 406, 436, 577 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| CseI | GACGC | 1 cut(s) | 143 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 548, 583 |
| CviAII | CATG | 4 cut(s) | 37, 101, 245, 392 |
| CviJI | RGCY | 3 cut(s) | 68, 97, 385 |
| CviKI_1 | RGCY | 3 cut(s) | 68, 97, 385 |
| DdeI | CTNAG | 5 cut(s) | 159, 377, 412, 555, 633 |
| DpnI | GATC | 1 cut(s) | 576 |
| DpnII | GATC | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 446 |
| EarI | CTCTTC | 2 cut(s) | 27, 446 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 464 |
| Eco32I | GATATC | 1 cut(s) | 328 |
| EcoRV | GATATC | 1 cut(s) | 328 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 464 |
| EcoT22I | ATGCAT | 1 cut(s) | 49 |
| ErhI | CCWWGG | 2 cut(s) | 287, 464 |
| FaeI | CATG | 4 cut(s) | 40, 104, 248, 395 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 156, 188, 448, 480, 525, 557 |
| FatI | CATG | 4 cut(s) | 36, 100, 244, 391 |
| Fnu4HI | GCNGC | 2 cut(s) | 249, 705 |
| FokI | GGATG | 3 cut(s) | 413, 443, 584 |
| Fsp4HI | GCNGC | 2 cut(s) | 249, 705 |
| FspBI | CTAG | 5 cut(s) | 191, 288, 491, 498, 745 |
| GluI | GCNGC | 2 cut(s) | 249, 705 |
| HapII | CCGG | 2 cut(s) | 428, 737 |
| HgaI | GACGC | 1 cut(s) | 143 |
| Hin1II | CATG | 4 cut(s) | 40, 104, 248, 395 |
| HinfI | GANTC | 4 cut(s) | 19, 304, 629, 719 |
| HpaII | CCGG | 2 cut(s) | 428, 737 |
| Hpy166II | GTNNAC | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 6 cut(s) | 52, 446, 601, 634, 667, 724 |
| Hpy188III | TCNNGA | 3 cut(s) | 317, 428, 533 |
| Hpy8I | GTNNAC | 1 cut(s) | 235 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 2 cut(s) | 360, 616 |
| HpyCH4V | TGCA | 3 cut(s) | 47, 59, 391 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 65 |
| HpyF3I | CTNAG | 5 cut(s) | 159, 377, 412, 555, 633 |
| HpySE526I | ACGT | 2 cut(s) | 360, 616 |
| Hsp92II | CATG | 4 cut(s) | 40, 104, 248, 395 |
| Kpn2I | TCCGGA | 1 cut(s) | 427 |
| Kzo9I | GATC | 1 cut(s) | 574 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LpnPI | CCDG | 3 cut(s) | 24, 389, 441 |
| Lsp1109I | GCAGC | 2 cut(s) | 235, 691 |
| LweI | GCATC | 3 cut(s) | 34, 56, 715 |
| MaeI | CTAG | 5 cut(s) | 191, 288, 491, 498, 745 |
| MaeII | ACGT | 2 cut(s) | 360, 616 |
| MaeIII | GTNAC | 1 cut(s) | 493 |
| MalI | GATC | 1 cut(s) | 576 |
| MboI | GATC | 1 cut(s) | 574 |
| MboII | GAAGA | 2 cut(s) | 14, 433 |
| MhlI | GDGCHC | 1 cut(s) | 529 |
| MluCI | AATT | 4 cut(s) | 225, 422, 447, 484 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 8 cut(s) | 108, 127, 271, 388, 391, 409, 445, 671 |
| Mph1103I | ATGCAT | 1 cut(s) | 49 |
| MroI | TCCGGA | 1 cut(s) | 427 |
| MseI | TTAA | 3 cut(s) | 518, 543, 639 |
| MspI | CCGG | 2 cut(s) | 428, 737 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 65 |
| NdeII | GATC | 1 cut(s) | 574 |
| NlaIII | CATG | 4 cut(s) | 40, 104, 248, 395 |
| NsiI | ATGCAT | 1 cut(s) | 49 |
| NspV | TTCGAA | 1 cut(s) | 692 |
| PfeI | GAWTC | 3 cut(s) | 304, 629, 719 |
| PkrI | GCNGC | 2 cut(s) | 250, 706 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| SaqAI | TTAA | 3 cut(s) | 518, 543, 639 |
| SatI | GCNGC | 2 cut(s) | 249, 705 |
| Sau3AI | GATC | 1 cut(s) | 574 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SduI | GDGCHC | 1 cut(s) | 529 |
| SetI | ASST | 7 cut(s) | 70, 289, 293, 363, 378, 456, 619 |
| SfaNI | GCATC | 3 cut(s) | 34, 56, 715 |
| SfuI | TTCGAA | 1 cut(s) | 692 |
| SmlI | CTYRAG | 1 cut(s) | 118 |
| SmoI | CTYRAG | 1 cut(s) | 118 |
| Sse9I | AATT | 4 cut(s) | 225, 422, 447, 484 |
| SspMI | CTAG | 5 cut(s) | 191, 288, 491, 498, 745 |
| StyI | CCWWGG | 2 cut(s) | 287, 464 |
| TaiI | ACGT | 2 cut(s) | 363, 619 |
| TaqI | TCGA | 2 cut(s) | 330, 692 |
| TasI | AATT | 4 cut(s) | 225, 422, 447, 484 |
| TfiI | GAWTC | 3 cut(s) | 304, 629, 719 |
| Tru1I | TTAA | 3 cut(s) | 518, 543, 639 |
| Tru9I | TTAA | 3 cut(s) | 518, 543, 639 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseI | GCWGC | 2 cut(s) | 248, 704 |
| TspDTI | ATGAA | 3 cut(s) | 195, 447, 642 |
| TspRI | CASTG | 1 cut(s) | 244 |
| XapI | RAATTY | 1 cut(s) | 422 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XspI | CTAG | 5 cut(s) | 191, 288, 491, 498, 745 |
| Zsp2I | ATGCAT | 1 cut(s) | 49 |