RchiOBHm_Chr3g0450421

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000013
Physical Location & Seq
Reverse (-)
1963859 .. 1965641
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41776

Sequence Viewer

Length: 1416 bp
ATGCTCACTGAAGCTCCTATCATCATGCCACCGGATTGGAATCTACCATTTGAGCTTATGTGTGATGCCTCTGACTACGCAATTGGGGCTGTTTTGGGCCAAAGAGTGGATAAGCTTCCTCATGCCATCTACTACGCGTCTCGTACCTTGAATGACGCTCAGCTAAACTATTCTACCACTGAAAAAGAACTTCTTGCTGTAGTTTTTGCTTTAGAAAAGTTTAGGTCTTATTTGGTTGGAACAAAGATTACTATTTTCACTGACCATGCAGCTCTAAAGTATTTGCTTAACAAGAAGGAGGCAAAACCAAGGTTGATTAGATGGATGCTTCTACTCCAAGAGTTTGATCTTGAGATAAAAGACAAGAAGGGGAGCGAGAATGTTGTAGCTGACCACCTTAGCCGACTTGTCAATAACTCCAACACAGAAGAGAATTCTCTTCCTCTTCGTGAGAGCTTTCCAGATGAACAGTTGTTTGCTATGCAAGCTTCTGATCCTTGGTATGCGGACATCATCAACTATTTGGTCACCAAGAAAATTCCGGAGGATTTCACACGTGCTCAAAAGGACAAGTTGGTGAAGATGGCCAAATACTATGTGTGGGATGACCCCTATCTATGGAAGCATTGCCCAGATTTAGTGATAAGAAGGTGTGTACCCGAAACTGAATTTCATTCTATATTAACCTTTTGTCACTCTTATGCTTATGGAGGTCACTTTGGAGCTAAGAAGACTGCTCTCAAAGTATTAGAAAGTGGCTTCTTTTGGCCCACTTTGTTTAAGGATGCATATGCATTTTGTGTATCATGTGATCGTTGTCAACGTACAGGTAACTTGGGCCCAAGAGATCAAATGCCTCAAAATCCTATTCTTATTGTCGAAATCTTTGATGTTTGGGGCATAGATTTCATGGGACCTTTTCCTTCTTCAAATGGTTATCTTTACATTCTATTAGCTGTTGATTATGTCTCTAAATGGGTGGAAGCAAAGGCCACCCGGACTAATGATTCCAAAGTTGTTTTGAGTTTTCTTAAAGAGCATGTCTTTTCGAGATTTGGAACACCTAGAGCTATCATCAGCGATGGAGGGACTCATTTTTGCAATCGATCGTTTGAAGCTTTGTTGAAGAAGTACAATGTCACACATAGGGTCTCAACGCCCTACCATCCTCAGACAAGTGGCCAAGCGGAGGTTTCTAATCGACAAGTGAAGCAAATACTTGAGAAGACAGTTGGACCCACTCGGAAGGATTGGAGCTCACGCTTAGATGATGCTTTATGGGCATACCGAACTGCTTACAAGACCCCATTGGGATGTCTCCATATCGGCTTGTCTTTGGCAAACCATGTCACCTTCCAGTGGAACTTGAGCATAGGGCTTATTGGGCGATTAAGCAATTTAATATGGATATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

471

Amino Acids

54.09

Weight (kDa)

8.4

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 2 - 85 1.3e-28 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 12 - 115 2.1e-38 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 219 - 276 4e-11 Integrase zinc binding domain
rve PF00665 297 - 390 4.2e-17 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000013)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00750
fragaria_vesca FvH4_1g09710 FvH4_1g27931 FvH4_1g27951 FvH4_1g27952 FvH4_1g27956 FvH4_1g28083 FvH4_1g28442 FvH4_1g28532 FvH4_1g29491 FvH4_1g29492 FvH4_1g29493 FvH4_1g29494 FvH4_1g29682 FvH4_1g29685 FvH4_1g29771 FvH4_2g08113 FvH4_2g08114 FvH4_2g14571 FvH4_2g22452 FvH4_2g35543 FvH4_3g01281 FvH4_3g19211 FvH4_3g19212 FvH4_3g19232 FvH4_3g21342 FvH4_3g21381 FvH4_3g22811 FvH4_3g26051 FvH4_3g26316 FvH4_3g26555 FvH4_3g31201 FvH4_3g31892 FvH4_3g32071 FvH4_3g36983 FvH4_3g40761 FvH4_3g44964 FvH4_3g44965 FvH4_4g02082 FvH4_4g03221 FvH4_4g05351 FvH4_4g05352 FvH4_4g08761 FvH4_4g08973 FvH4_4g09161 FvH4_4g09241 FvH4_4g09322 FvH4_4g10092 FvH4_4g10251 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14130 FvH4_4g14302 FvH4_4g14401 FvH4_4g14402 FvH4_4g14403 FvH4_4g14569 FvH4_4g15806 FvH4_4g15807 FvH4_4g15808 FvH4_4g16144 FvH4_4g16145 FvH4_4g16146 FvH4_4g17204 FvH4_4g17205 FvH4_4g17206 FvH4_4g17207 FvH4_4g17692 FvH4_4g24603 FvH4_5g22912 FvH4_5g34661 FvH4_6g00252 FvH4_6g00253 FvH4_6g18062 FvH4_6g22851 FvH4_6g22852 FvH4_6g32641 FvH4_6g36491 FvH4_6g36492 FvH4_6g37921 FvH4_6g48511 FvH4_7g01732 FvH4_7g01733 FvH4_7g03471 FvH4_7g04071 FvH4_7g04231 FvH4_7g12351 FvH4_7g14381 FvH4_7g20371 FvH4_7g20372 FvH4_7g22571 FvH4_7g25271 FvH4_7g25272 FvH4_7g25273
malus_domestica MD00G1099500.v1.1 MD00G1134900.v1.1 MD00G1199900.v1.1 MD02G1203700.v1.1 MD02G1206700.v1.1 MD07G1097600.v1.1 MD08G1099400.v1.1 MD08G1149900.v1.1 MD08G1150000.v1.1 MD08G1150100.v1.1 MD10G1200800.v1.1 MD15G1306700.v1.1 MD15G1306800.v1.1 MD15G1321900.v1.1 MD16G1251200.v1.1 MD17G1170700.v1.1 MD17G1170900.v1.1
pyrus_communis pycom01g00440 pycom01g00890 pycom01g01140 pycom01g01590 pycom01g01620 pycom01g01640 pycom01g01740 pycom01g02310 pycom01g02760 pycom01g03670 pycom01g04180 pycom01g04200 pycom02g18120 pycom02g18300 pycom02g22040 pycom03g09950 pycom03g10150 pycom03g11910 pycom03g11940 pycom03g18650 pycom04g06630 pycom04g06990 pycom04g07610 pycom04g07750 pycom04g08190 pycom04g09650 pycom04g10380 pycom04g12350 pycom04g12360 pycom05g01490 pycom05g03640 pycom05g06240 pycom05g06610 pycom05g08950 pycom06g05580 pycom06g06900 pycom06g07080 pycom07g10140 pycom07g10970 pycom07g13410 pycom07g15510 pycom07g15520 pycom08g13910 pycom09g12650 pycom09g13010 pycom09g13630 pycom09g13780 pycom09g13860 pycom09g14280 pycom10g07230 pycom1125g00040 pycom1153g00020 pycom11g09720 pycom11g09730 pycom11g09740 pycom11g16740 pycom11g17060 pycom11g20170 pycom1217g00060 pycom12382g00040 pycom12405g00030 pycom12406g00010 pycom12406g00020 pycom12419g00290 pycom12420g00030 pycom12420g00060 pycom12420g00070 pycom12420g00080 pycom12420g00110 pycom12423g00120 pycom12424g00040 pycom12424g00050 pycom12426g00020 pycom12426g00150 pycom12426g00160 pycom12426g00320 pycom12426g00650 pycom12426g00730 pycom12429g00030 pycom12439g00060 pycom12463g00030 pycom12468g00010 pycom12526g00030 pycom12526g00050 pycom12534g00010 pycom12556g00050 pycom12561g00280 pycom12568g00070 pycom12569g00010 pycom1256g00080 pycom1256g00120 pycom1256g00270 pycom1256g00280 pycom12575g00020 pycom12575g00060 pycom12577g00010 pycom12578g00010 pycom12589g00010 pycom12594g00010 pycom12596g00020 pycom12613g00040 pycom12613g00050 pycom12621g00020 pycom12630g00030 pycom12630g00090 pycom12633g00030 pycom12658g00080 pycom12659g00130 pycom12659g00240 pycom12661g00180 pycom12674g00010 pycom12675g00080 pycom12698g00020 pycom12g05860 pycom12g09040 pycom12g09680 pycom12g11990 pycom12g12930 pycom12g12940 pycom12g14090 pycom13g09490 pycom13g17080 pycom13g21650 pycom13g21860 pycom13g22080 pycom13g22290 pycom13g22300 pycom13g23220 pycom13g24040 pycom13g24190 pycom13g24790 pycom13g25360 pycom13g25680 pycom13g25770 pycom13g25780 pycom13g25910 pycom13g26110 pycom13g26270 pycom13g26380 pycom13g26390 pycom13g26480 pycom13g26920 pycom13g27220 pycom13g28550 pycom13g29330 pycom14g07990 pycom14g08020 pycom14g08690 pycom14g08860 pycom14g10000 pycom1534g00030 pycom15g21840 pycom15g29900 pycom15g31990 pycom15g34410 pycom1604g00100 pycom1667g00020 pycom16g19300 pycom16g21890 pycom16g21940 pycom1729g00050 pycom1729g00170 pycom1735g00030 pycom1735g00060 pycom1735g00080 pycom17g11600 pycom17g11920 pycom17g12980 pycom17g15280 pycom17g16060 pycom17g16510 pycom17g17570 pycom17g17580 pycom17g17590 pycom17g17710 pycom17g17720 pycom17g17940 pycom17g18100 pycom17g18550 pycom17g18810 pycom1844g00050 pycom1844g00060 pycom1845g00030 pycom1845g00090 pycom1866g00040 pycom1867g00030 pycom1880g00080 pycom1903g00030 pycom1903g00050 pycom1903g00080 pycom2002g00080 pycom2177g00050 pycom2205g00030 pycom2217g00050 pycom2229g00020 pycom243g00100 pycom2596g00020 pycom2751g00010 pycom2821g00080 pycom2933g00010 pycom2989g00010 pycom323g00010 pycom420g00370 pycom420g00380 pycom420g00830 pycom436g00020 pycom436g00090 pycom436g00250 pycom436g00320 pycom505g00020 pycom505g00060 pycom505g00070 pycom510g00040 pycom5153684g00020 pycom5153684g00460 pycom531g00010 pycom531g00020 pycom556g00100 pycom608g00070 pycom808g00020 pycom808g00390 pycom808g00430 pycom808g00440 pycom808g00660 pycom808g00690 pycom889g00020 pycom889g00070 pycom920g00010 pycom992g00020 pycom992g00030
rosa_chinensis RchiOBHm_Chr0c01g0497691 RchiOBHm_Chr0c36g0502941 RchiOBHm_Chr1g0320831 RchiOBHm_Chr1g0320841 RchiOBHm_Chr1g0344611 RchiOBHm_Chr1g0358301 RchiOBHm_Chr1g0381281 RchiOBHm_Chr1g0381291 RchiOBHm_Chr2g0117701 RchiOBHm_Chr2g0130161 RchiOBHm_Chr2g0130421 RchiOBHm_Chr2g0132971 RchiOBHm_Chr2g0133871 RchiOBHm_Chr2g0154881 RchiOBHm_Chr2g0154911 RchiOBHm_Chr3g0450421 RchiOBHm_Chr3g0452811 RchiOBHm_Chr3g0469711 RchiOBHm_Chr3g0493781 RchiOBHm_Chr3g0495801 RchiOBHm_Chr4g0404441 RchiOBHm_Chr4g0405891 RchiOBHm_Chr4g0410431 RchiOBHm_Chr4g0415841 RchiOBHm_Chr4g0418061 RchiOBHm_Chr5g0043631 RchiOBHm_Chr6g0272771 RchiOBHm_Chr7g0180211 RchiOBHm_Chr7g0193951
rosa_multiflora Rmu_co8039452.1_g000001 Rmu_co8083434.1_g000001 Rmu_co8112738.1_g000001 Rmu_co8202386.1_g000001 Rmu_co8313305.1_g000001 Rmu_sc0000007.1_g000025 Rmu_sc0000083.1_g000007 Rmu_sc0000322.1_g000029 Rmu_sc0000516.1_g000040 Rmu_sc0000621.1_g000033 Rmu_sc0000914.1_g000005 Rmu_sc0001136.1_g000005 Rmu_sc0001306.1_g000046 Rmu_sc0001438.1_g000017 Rmu_sc0001438.1_g000018 Rmu_sc0001504.1_g000001 Rmu_sc0001675.1_g000001 Rmu_sc0001678.1_g000001 Rmu_sc0002082.1_g000080 Rmu_sc0002206.1_g000035 Rmu_sc0002457.1_g000001 Rmu_sc0003002.1_g000012 Rmu_sc0003232.1_g000021 Rmu_sc0003376.1_g000002 Rmu_sc0003432.1_g000001 Rmu_sc0003574.1_g000002 Rmu_sc0003753.1_g000023 Rmu_sc0004239.1_g000003 Rmu_sc0004866.1_g000020 Rmu_sc0004904.1_g000009 Rmu_sc0005470.1_g000003 Rmu_sc0005835.1_g000005 Rmu_sc0005925.1_g000002 Rmu_sc0006358.1_g000001 Rmu_sc0006366.1_g000022 Rmu_sc0006401.1_g000001 Rmu_sc0006489.1_g000001 Rmu_sc0006652.1_g000001 Rmu_sc0007038.1_g000014 Rmu_sc0007067.1_g000001 Rmu_sc0007480.1_g000005 Rmu_sc0008412.1_g000001 Rmu_sc0008719.1_g000001 Rmu_sc0009019.1_g000001 Rmu_sc0009438.1_g000008 Rmu_sc0009785.1_g000015 Rmu_sc0010170.1_g000002 Rmu_sc0012567.1_g000001 Rmu_sc0014039.1_g000002 Rmu_sc0014727.1_g000003 Rmu_sc0016222.1_g000001 Rmu_sc0017735.1_g000001 Rmu_sc0017868.1_g000001 Rmu_sc0017956.1_g000001 Rmu_sc0018810.1_g000001 Rmu_sc0019109.1_g000001 Rmu_sc0020243.1_g000001 Rmu_sc0020660.1_g000001 Rmu_sc0022433.1_g000001 Rmu_sc0022595.1_g000001 Rmu_sc0023258.1_g000001 Rmu_sc0024488.1_g000001 Rmu_sc0025858.1_g000001 Rmu_sc0026481.1_g000003 Rmu_sc0028000.1_g000001 Rmu_sc0031652.1_g000001 Rmu_sc0032644.1_g000001 Rmu_sc0033297.1_g000001 Rmu_sc0040410.1_g000001 Rmu_sc0042790.1_g000002 Rmu_ssc0000011.1_g000053 Rmu_ssc0000089.1_g000019 Rmu_ssc0000350.1_g000017
rosa_roxburghii Rroxscaffold_10G00433140 Rroxscaffold_1G00030920 Rroxscaffold_1G00030960 Rroxscaffold_1G00031010 Rroxscaffold_2G00085620 Rroxscaffold_2G00117570 Rroxscaffold_2G00117640 Rroxscaffold_3G00239020 Rroxscaffold_3G00245490 Rroxscaffold_4G00318740 Rroxscaffold_5G00333750 Rroxscaffold_5G00351140 Rroxscaffold_5G00351170 Rroxscaffold_6G00391220 Rroxscaffold_6G00391230 Rroxscaffold_7G00194870 Rroxscaffold_7G00196310 Rroxscaffold_7G00203910 Rroxscaffold_8G00436890 Rroxscaffold_9G00437900
rosa_rugosa Rorug04G0034000 Rorug04G0049300
rosa_samantha Rh2BG324800 Rh3CG286600 Rh4AG154200 Rh4BG060200 Rh5AG465000
rosa_wichuraiana Rw0G001700 Rw0G002220 Rw0G002610 Rw0G003900 Rw0G005180 Rw0G005190 Rw0G005330 Rw0G010320 Rw0G010460 Rw0G011800 Rw0G012250 Rw0G012750 Rw0G012760 Rw0G012770 Rw0G015330 Rw0G018210 Rw0G020550 Rw0G020700 Rw0G020810 Rw0G021790 Rw0G022660 Rw0G022910 Rw1G008700 Rw1G008870 Rw1G009360 Rw1G009610 Rw1G009750 Rw1G009760 Rw1G009910 Rw1G010630 Rw1G010650 Rw2G022280 Rw2G023370 Rw2G023960 Rw2G025190 Rw2G025550 Rw2G025590 Rw2G025620 Rw2G025720 Rw2G025730 Rw2G025790 Rw2G025810 Rw2G025880 Rw2G026750 Rw2G033860 Rw2G037040 Rw3G025490 Rw3G026360 Rw3G027500 Rw3G027510 Rw3G027820 Rw3G028390 Rw3G028500 Rw3G028640 Rw3G029070 Rw3G029140 Rw3G029220 Rw3G029610 Rw4G002830 Rw4G009210 Rw4G009560 Rw4G010400 Rw4G010860 Rw4G011150 Rw4G011260 Rw4G011700 Rw4G012670 Rw4G018460 Rw4G020770 Rw5G029790 Rw5G029800 Rw5G030040 Rw5G030860 Rw5G030940 Rw5G030950 Rw5G030970 Rw5G031090 Rw5G031230 Rw5G031240 Rw5G031290 Rw5G031330 Rw5G031340 Rw5G031350 Rw5G031360 Rw5G031420 Rw5G031430 Rw5G031470 Rw5G031530 Rw5G045200 Rw5G049340 Rw5G049830 Rw6G001320 Rw6G003070 Rw6G007640 Rw6G011560 Rw6G012460 Rw6G014020 Rw6G014530 Rw6G014590 Rw6G015150 Rw6G015160 Rw6G015200 Rw6G015210 Rw6G015220 Rw6G015270 Rw6G015280 Rw6G015310 Rw6G015330 Rw6G015400 Rw6G016140 Rw6G016410 Rw6G016860 Rw6G028980 Rw6G035110 Rw7G023030 Rw7G024040 Rw7G025740 Rw7G028390 Rw7G028530 Rw7G028600 Rw7G028610 Rw7G028620 Rw7G028630 Rw7G028640 Rw7G028920 Rw7G031450 Rw7G034150 Rw7G038570 Rw7G041520 Rw7G042470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AccII CGCG 1 cut(s) 137
AccIII TCCGGA 1 cut(s) 541
AciI CCGC 2 cut(s) 506, 1187
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 2 cut(s) 585, 1180
AcsI RAATTY 3 cut(s) 433, 537, 668
AcuI CTGAAG 1 cut(s) 30
AcvI CACGTG 1 cut(s) 557
AfaI GTAC 4 cut(s) 145, 657, 826, 1133
AfiI CCNNNNNNNGG 4 cut(s) 106, 618, 1189, 1359
AflIII ACRYGT 2 cut(s) 135, 554
AgsI TTSAA 4 cut(s) 151, 930, 1115, 1126
Alw21I GWGCWC 2 cut(s) 562, 1259
Alw26I GTCTC 4 cut(s) 144, 973, 1156, 1322
AlwI GGATC 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 6 cut(s) 97, 585, 767, 838, 990, 1180
ApaI GGGCCC 1 cut(s) 842
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 433, 537, 668
AspS9I GGNCC 6 cut(s) 97, 768, 838, 839, 914, 1235
AsuC2I CCSGG 1 cut(s) 997
AsuHPI GGTGA 3 cut(s) 520, 589, 1342
AvaII GGWCC 2 cut(s) 914, 1235
BaeGI GKGCMC 1 cut(s) 842
BalI TGGCCA 2 cut(s) 587, 1182
BanII GRGCYC 2 cut(s) 842, 1259
BbrPI CACGTG 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 737, 1232
Bbv12I GWGCWC 2 cut(s) 562, 1259
BbvI GCAGC 1 cut(s) 281
BccI CCATC 5 cut(s) 134, 315, 577, 1076, 1173
BcnI CCSGG 1 cut(s) 997
BcoDI GTCTC 4 cut(s) 144, 973, 1156, 1322
BfaI CTAG 1 cut(s) 1065
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 270
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 997
Bme18I GGWCC 2 cut(s) 914, 1235
BmgT120I GGNCC 6 cut(s) 97, 768, 838, 839, 914, 1235
BmiI GGNNCC 3 cut(s) 840, 915, 1237
BmrFI CCNGG 1 cut(s) 997
BmsI GCATC 4 cut(s) 55, 315, 775, 1261
BpiI GAAGAC 2 cut(s) 737, 1232
Bpu10I CCTNAGC 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 159
BpuEI CTTGAG 3 cut(s) 371, 1241, 1387
BpuMI CCSGG 1 cut(s) 997
Bsa29I ATCGAT 1 cut(s) 1105
BsaAI YACGTR 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 1156
BsaJI CCNNGG 2 cut(s) 308, 497
BsaWI WCCGGW 2 cut(s) 31, 541
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 618, 1189, 1359
Bse1I ACTGG 1 cut(s) 1357
Bse3DI GCAATG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 541
BseCI ATCGAT 1 cut(s) 1105
BseDI CCNNGG 2 cut(s) 308, 497
BseGI GGATG 5 cut(s) 330, 610, 790, 1165, 1319
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 106, 618, 1189, 1359
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 2 cut(s) 173, 1184
BseNI ACTGG 1 cut(s) 1357
BseSI GKGCMC 1 cut(s) 842
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 1109
BshFI GGCC 6 cut(s) 99, 587, 769, 840, 992, 1182
BshVI ATCGAT 1 cut(s) 1105
BsiEI CGRYCG 1 cut(s) 1109
BsiHKAI GWGCWC 2 cut(s) 562, 1259
BsiSI CCGG 3 cut(s) 32, 542, 997
BslFI GGGAC 2 cut(s) 927, 1102
BslI CCNNNNNNNGG 4 cut(s) 106, 618, 1189, 1359
BsmAI GTCTC 4 cut(s) 144, 973, 1156, 1322
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 927, 1102
BsnI GGCC 6 cut(s) 99, 587, 769, 840, 992, 1182
Bso31I GGTCTC 1 cut(s) 1156
Bsp120I GGGCCC 1 cut(s) 838
Bsp1286I GDGCHC 3 cut(s) 562, 842, 1259
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 5 cut(s) 346, 493, 811, 847, 1106
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 2 cut(s) 506, 1187
BspANI GGCC 6 cut(s) 99, 587, 769, 840, 992, 1182
BspCNI CTCAG 2 cut(s) 172, 1183
BspDI ATCGAT 1 cut(s) 1105
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 3 cut(s) 840, 915, 1237
BspPI GGATC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 1156
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 1 cut(s) 1357
BssECI CCNNGG 2 cut(s) 308, 497
BssMI GATC 5 cut(s) 346, 493, 811, 847, 1106
BssT1I CCWWGG 2 cut(s) 308, 497
Bst4CI ACNGT 2 cut(s) 471, 1231
Bst6I CTCTTC 3 cut(s) 423, 444, 450
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 5 cut(s) 159, 398, 726, 1170, 1264
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 5 cut(s) 330, 610, 790, 1165, 1319
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 5 cut(s) 349, 496, 814, 850, 1109
BstMAI GTCTC 4 cut(s) 144, 973, 1156, 1322
BstMBI GATC 5 cut(s) 346, 493, 811, 847, 1106
BstMCI CGRYCG 1 cut(s) 1109
BstMWI GCNNNNNNNGC 4 cut(s) 86, 485, 1280, 1384
BstNSI RCATGY 1 cut(s) 1043
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 995
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 842
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 2 cut(s) 737, 1232
BstXI CCANNNNNNTGG 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 1105
BsuRI GGCC 6 cut(s) 99, 587, 769, 840, 992, 1182
BsuTUI ATCGAT 1 cut(s) 1105
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 5 cut(s) 330, 610, 790, 1165, 1319
BtsIMutI CAGTG 4 cut(s) 6, 177, 258, 1364
Cac8I GCNNGC 1 cut(s) 486
Cfr13I GGNCC 6 cut(s) 97, 768, 838, 839, 914, 1235
ClaI ATCGAT 1 cut(s) 1105
CseI GACGC 2 cut(s) 126, 164
Csp6I GTAC 4 cut(s) 144, 656, 825, 1132
CviAII CATG 7 cut(s) 25, 122, 266, 807, 910, 1040, 1346
CviQI GTAC 4 cut(s) 144, 656, 825, 1132
DdeI CTNAG 5 cut(s) 159, 398, 726, 1170, 1264
DpnI GATC 5 cut(s) 348, 495, 813, 849, 1108
DpnII GATC 5 cut(s) 346, 493, 811, 847, 1106
EaeI YGGCCR 2 cut(s) 585, 1180
Eam1104I CTCTTC 3 cut(s) 423, 444, 450
EarI CTCTTC 3 cut(s) 423, 444, 450
Ecl136II GAGCTC 1 cut(s) 1257
Eco130I CCWWGG 2 cut(s) 308, 497
Eco24I GRGCYC 2 cut(s) 842, 1259
Eco31I GGTCTC 1 cut(s) 1156
Eco47I GGWCC 2 cut(s) 914, 1235
Eco53kI GAGCTC 1 cut(s) 1257
Eco57I CTGAAG 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 1257
EcoO109I RGGNCCY 1 cut(s) 914
EcoO65I GGTNACC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 308, 497
EcoT22I ATGCAT 2 cut(s) 790, 796
EcoT38I GRGCYC 2 cut(s) 842, 1259
ErhI CCWWGG 2 cut(s) 308, 497
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 7 cut(s) 28, 125, 269, 810, 913, 1043, 1349
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 2 cut(s) 927, 1102
FatI CATG 7 cut(s) 24, 121, 265, 806, 909, 1039, 1345
FauNDI CATATG 1 cut(s) 790
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 5 cut(s) 337, 617, 797, 1152, 1326
FriOI GRGCYC 2 cut(s) 842, 1259
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 1065
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 6 cut(s) 99, 587, 769, 840, 992, 1182
HapII CCGG 3 cut(s) 32, 542, 997
HgaI GACGC 2 cut(s) 126, 164
Hin1II CATG 7 cut(s) 28, 125, 269, 810, 913, 1043, 1349
HincII GTYRAC 1 cut(s) 821
HindII GTYRAC 1 cut(s) 821
HindIII AAGCTT 3 cut(s) 113, 486, 1116
HinfI GANTC 3 cut(s) 40, 1007, 1090
HpaII CCGG 3 cut(s) 32, 542, 997
HphI GGTGA 3 cut(s) 520, 589, 1342
Hpy166II GTNNAC 2 cut(s) 656, 821
Hpy188I TCNGA 4 cut(s) 73, 493, 1173, 1245
Hpy188III TCNNGA 5 cut(s) 350, 449, 461, 542, 1050
Hpy8I GTNNAC 2 cut(s) 656, 821
HpyAV CCTTC 6 cut(s) 289, 361, 642, 933, 1240, 1363
HpyCH4III ACNGT 2 cut(s) 471, 1231
HpyCH4IV ACGT 2 cut(s) 556, 823
HpyCH4V TGCA 5 cut(s) 269, 484, 788, 794, 1101
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 485, 1280, 1384
HpyF3I CTNAG 5 cut(s) 159, 398, 726, 1170, 1264
HpySE526I ACGT 2 cut(s) 556, 823
Hsp92II CATG 7 cut(s) 28, 125, 269, 810, 913, 1043, 1349
Kpn2I TCCGGA 1 cut(s) 541
Kzo9I GATC 5 cut(s) 346, 493, 811, 847, 1106
LmnI GCTCC 4 cut(s) 19, 372, 722, 1254
LpnPI CCDG 7 cut(s) 45, 474, 555, 645, 813, 1010, 1370
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 4 cut(s) 55, 315, 775, 1261
MaeI CTAG 1 cut(s) 1065
MaeII ACGT 2 cut(s) 556, 823
MaeIII GTNAC 6 cut(s) 526, 692, 713, 830, 1138, 1348
MalI GATC 5 cut(s) 348, 495, 813, 849, 1108
MboI GATC 5 cut(s) 346, 493, 811, 847, 1106
MboII GAAGA 8 cut(s) 431, 437, 440, 592, 742, 918, 1138, 1237
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 3 cut(s) 562, 842, 1259
MlsI TGGCCA 2 cut(s) 587, 1182
MluCI AATT 5 cut(s) 81, 433, 537, 668, 1396
MluI ACGCGT 1 cut(s) 135
MluNI TGGCCA 2 cut(s) 587, 1182
MlyI GAGTC 1 cut(s) 1084
MmeI TCCRAC 3 cut(s) 217, 444, 1213
Mox20I TGGCCA 2 cut(s) 587, 1182
Mph1103I ATGCAT 2 cut(s) 790, 796
MroI TCCGGA 1 cut(s) 541
MscI TGGCCA 2 cut(s) 587, 1182
MseI TTAA 6 cut(s) 288, 683, 780, 1032, 1391, 1400
MslI CAYNNNNRTG 2 cut(s) 699, 1312
Msp20I TGGCCA 2 cut(s) 587, 1182
MspI CCGG 3 cut(s) 32, 542, 997
MspR9I CCNGG 1 cut(s) 997
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 86, 485, 1280, 1384
NciI CCSGG 1 cut(s) 997
NdeI CATATG 1 cut(s) 790
NdeII GATC 5 cut(s) 346, 493, 811, 847, 1106
NlaIII CATG 7 cut(s) 28, 125, 269, 810, 913, 1043, 1349
NlaIV GGNNCC 3 cut(s) 840, 915, 1237
NmuCI GTSAC 5 cut(s) 526, 692, 713, 1138, 1348
NsiI ATGCAT 2 cut(s) 790, 796
NspI RCATGY 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 820
PfeI GAWTC 2 cut(s) 40, 1007
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 1 cut(s) 271
Ple19I CGATCG 1 cut(s) 1109
PleI GAGTC 1 cut(s) 1084
PmaCI CACGTG 1 cut(s) 557
PmlI CACGTG 1 cut(s) 557
PpsI GAGTC 1 cut(s) 1084
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 1259
Psp5II RGGWCCY 1 cut(s) 914
PspCI CACGTG 1 cut(s) 557
PspEI GGTNACC 1 cut(s) 526
PspN4I GGNNCC 3 cut(s) 840, 915, 1237
PspOMI GGGCCC 1 cut(s) 838
PspPI GGNCC 6 cut(s) 97, 768, 838, 839, 914, 1235
PspPPI RGGWCCY 1 cut(s) 914
PsrI GAACNNNNNNTAC 2 cut(s) 232, 264
PvuI CGATCG 1 cut(s) 1109
RsaI GTAC 4 cut(s) 145, 657, 826, 1133
RsaNI GTAC 4 cut(s) 144, 656, 825, 1132
RseI CAYNNNNRTG 2 cut(s) 699, 1312
SacI GAGCTC 1 cut(s) 1259
SaqAI TTAA 6 cut(s) 288, 683, 780, 1032, 1391, 1400
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 5 cut(s) 346, 493, 811, 847, 1106
Sau96I GGNCC 6 cut(s) 97, 768, 838, 839, 914, 1235
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 1 cut(s) 997
SduI GDGCHC 3 cut(s) 562, 842, 1259
SfaNI GCATC 4 cut(s) 55, 315, 775, 1261
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 914, 1235
SmiMI CAYNNNNRTG 2 cut(s) 699, 1312
SmlI CTYRAG 3 cut(s) 350, 1220, 1366
SmoI CTYRAG 3 cut(s) 350, 1220, 1366
Sse9I AATT 5 cut(s) 81, 433, 537, 668, 1396
SsiI CCGC 2 cut(s) 506, 1187
SspMI CTAG 1 cut(s) 1065
SstI GAGCTC 1 cut(s) 1259
StyD4I CCNGG 1 cut(s) 995
StyI CCWWGG 2 cut(s) 308, 497
TaaI ACNGT 2 cut(s) 471, 1231
TaiI ACGT 2 cut(s) 559, 826
TaqI TCGA 4 cut(s) 879, 1049, 1105, 1201
TasI AATT 5 cut(s) 81, 433, 537, 668, 1396
TatI WGTACW 1 cut(s) 1131
TfiI GAWTC 2 cut(s) 40, 1007
Tru1I TTAA 6 cut(s) 288, 683, 780, 1032, 1391, 1400
Tru9I TTAA 6 cut(s) 288, 683, 780, 1032, 1391, 1400
TscAI CASTG 4 cut(s) 13, 184, 265, 1364
TseFI GTSAC 5 cut(s) 526, 692, 713, 1138, 1348
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 5 cut(s) 526, 692, 713, 1138, 1348
TspDTI ATGAA 3 cut(s) 480, 662, 898
TspRI CASTG 4 cut(s) 13, 184, 265, 1364
Van91I CCANNNNNTGG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 914, 1235
XapI RAATTY 3 cut(s) 433, 537, 668
XceI RCATGY 1 cut(s) 1043
XspI CTAG 1 cut(s) 1065
Zsp2I ATGCAT 2 cut(s) 790, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.