protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 816 - 970 | 5.3e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1034 - 1132 | 1.1e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1059 - 1162 | 3.5e-38 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1262 - 1319 | 3.9e-12 | Integrase zinc binding domain |
| rve | PF00665 | 1340 - 1423 | 8.8e-12 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4160 |
| AarI | CACCTGC | 1 cut(s) | 112 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2774 |
| Acc16I | TGCGCA | 1 cut(s) | 1782 |
| Acc36I | ACCTGC | 3 cut(s) | 112, 1522, 3005 |
| Acc65I | GGTACC | 1 cut(s) | 3420 |
| AccB1I | GGYRCC | 3 cut(s) | 1859, 2014, 3420 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 893 |
| AccBSI | CCGCTC | 1 cut(s) | 4784 |
| AccI | GTMKAC | 1 cut(s) | 909 |
| AccII | CGCG | 1 cut(s) | 4582 |
| AccIII | TCCGGA | 1 cut(s) | 3589 |
| AciI | CCGC | 5 cut(s) | 107, 215, 3635, 4582, 4784 |
| AclI | AACGTT | 4 cut(s) | 2830, 3522, 3665, 4354 |
| AcoI | YGGCCR | 1 cut(s) | 2548 |
| AcuI | CTGAAG | 1 cut(s) | 1986 |
| AcyI | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| AfaI | GTAC | 8 cut(s) | 362, 1524, 1847, 2379, 2698, 3382, 3422, 4857 |
| AflII | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| AflIII | ACRYGT | 2 cut(s) | 23, 3935 |
| AgeI | ACCGGT | 3 cut(s) | 2086, 2365, 3956 |
| AhlI | ACTAGT | 3 cut(s) | 200, 686, 1361 |
| AjnI | CCWGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| AleI | CACNNNNGTG | 2 cut(s) | 2402, 2981 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3742, 3774 |
| Alw21I | GWGCWC | 5 cut(s) | 200, 747, 1884, 3691, 4201 |
| Alw26I | GTCTC | 8 cut(s) | 5, 160, 1136, 1234, 1288, 2072, 3186, 4416 |
| Ama87I | CYCGRG | 1 cut(s) | 2433 |
| Aor13HI | TCCGGA | 1 cut(s) | 3589 |
| ApeKI | GCWGC | 3 cut(s) | 71, 74, 3410 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2442, 2474 |
| AseI | ATTAAT | 1 cut(s) | 3770 |
| AsiGI | ACCGGT | 3 cut(s) | 2086, 2365, 3956 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 492, 3122 |
| Asp718I | GGTACC | 1 cut(s) | 3420 |
| AspA2I | CCTAGG | 1 cut(s) | 3449 |
| AspLEI | GCGC | 4 cut(s) | 1783, 1862, 3030, 4582 |
| AsuHPI | GGTGA | 7 cut(s) | 93, 205, 226, 1550, 2305, 2355, 4807 |
| AsuII | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| AvaI | CYCGRG | 1 cut(s) | 2433 |
| AvrII | CCTAGG | 1 cut(s) | 3449 |
| AxyI | CCTNAGG | 1 cut(s) | 1503 |
| BaeGI | GKGCMC | 2 cut(s) | 139, 2907 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3372, 3405 |
| BalI | TGGCCA | 1 cut(s) | 2550 |
| BamHI | GGATCC | 1 cut(s) | 1324 |
| BanI | GGYRCC | 3 cut(s) | 1859, 2014, 3420 |
| BanII | GRGCYC | 3 cut(s) | 747, 1587, 1884 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 27, 59, 1945, 1977 |
| BbsI | GAAGAC | 1 cut(s) | 3065 |
| Bbv12I | GWGCWC | 5 cut(s) | 200, 747, 1884, 3691, 4201 |
| BbvI | GCAGC | 3 cut(s) | 58, 86, 3422 |
| BceAI | ACGGC | 3 cut(s) | 1650, 3215, 4466 |
| BciT130I | CCWGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| BciVI | GTATCC | 3 cut(s) | 1737, 3459, 4302 |
| BclI | TGATCA | 3 cut(s) | 2524, 3403, 3763 |
| BcoDI | GTCTC | 8 cut(s) | 5, 160, 1136, 1234, 1288, 2072, 3186, 4416 |
| BcuI | ACTAGT | 3 cut(s) | 200, 686, 1361 |
| BfmI | CTRYAG | 4 cut(s) | 72, 2470, 2659, 3022 |
| BfoI | RGCGCY | 2 cut(s) | 1863, 3031 |
| BfrI | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| BfuAI | ACCTGC | 3 cut(s) | 112, 1522, 3005 |
| BfuI | GTATCC | 3 cut(s) | 1737, 3459, 4302 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1130 |
| BglII | AGATCT | 2 cut(s) | 2950, 3365 |
| BisI | GCNGC | 3 cut(s) | 72, 75, 3411 |
| BlnI | CCTAGG | 1 cut(s) | 3449 |
| BlpI | GCTNAGC | 1 cut(s) | 2241 |
| BlsI | GCNGC | 3 cut(s) | 73, 76, 3412 |
| BmcAI | AGTACT | 1 cut(s) | 362 |
| Bme1390I | CCNGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| BmeT110I | CYCGRG | 1 cut(s) | 2433 |
| BmrFI | CCNGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| BmsI | GCATC | 9 cut(s) | 58, 646, 1801, 2130, 3218, 3286, 3904, 3935, 4354 |
| BpiI | GAAGAC | 1 cut(s) | 3065 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1268, 1300, 1571, 1603 |
| BpmI | CTGGAG | 2 cut(s) | 99, 4800 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4253 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2241 |
| Bpu14I | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| Bsa29I | ATCGAT | 1 cut(s) | 1486 |
| BsaHI | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| BsaI | GGTCTC | 2 cut(s) | 5, 3186 |
| BsaWI | WCCGGW | 5 cut(s) | 2041, 2086, 2365, 3589, 3956 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 75, 105, 1680, 1710, 4339, 4369 |
| Bse118I | RCCGGY | 3 cut(s) | 2086, 2365, 3956 |
| Bse1I | ACTGG | 2 cut(s) | 2452, 4783 |
| Bse21I | CCTNAGG | 1 cut(s) | 1503 |
| Bse3DI | GCAATG | 4 cut(s) | 210, 735, 1827, 2601 |
| BseAI | TCCGGA | 1 cut(s) | 3589 |
| BseBI | CCWGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| BseCI | ATCGAT | 1 cut(s) | 1486 |
| BseMI | GCAATG | 4 cut(s) | 210, 735, 1827, 2601 |
| BseMII | CTCAG | 2 cut(s) | 689, 1299 |
| BseNI | ACTGG | 2 cut(s) | 2452, 4783 |
| BseRI | GAGGAG | 7 cut(s) | 96, 552, 597, 1595, 1820, 2246, 3572 |
| BseSI | GKGCMC | 2 cut(s) | 139, 2907 |
| BseXI | GCAGC | 3 cut(s) | 58, 86, 3422 |
| BseYI | CCCAGC | 1 cut(s) | 1552 |
| BsgI | GTGCAG | 2 cut(s) | 1550, 3138 |
| Bsh1236I | CGCG | 1 cut(s) | 4582 |
| BshNI | GGYRCC | 3 cut(s) | 1859, 2014, 3420 |
| BshTI | ACCGGT | 3 cut(s) | 2086, 2365, 3956 |
| BshVI | ATCGAT | 1 cut(s) | 1486 |
| BsiHKAI | GWGCWC | 5 cut(s) | 200, 747, 1884, 3691, 4201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2433 |
| BsiSI | CCGG | 5 cut(s) | 2042, 2087, 2366, 3590, 3957 |
| BslFI | GGGAC | 6 cut(s) | 387, 470, 774, 1605, 3171, 4341 |
| BsmAI | GTCTC | 8 cut(s) | 5, 160, 1136, 1234, 1288, 2072, 3186, 4416 |
| BsmBI | CGTCTC | 1 cut(s) | 2072 |
| BsmFI | GGGAC | 6 cut(s) | 387, 470, 774, 1605, 3171, 4341 |
| BsmI | GAATGC | 5 cut(s) | 374, 1311, 2416, 2673, 3122 |
| Bso31I | GGTCTC | 2 cut(s) | 5, 3186 |
| BsoBI | CYCGRG | 1 cut(s) | 2433 |
| Bsp119I | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| Bsp1286I | GDGCHC | 8 cut(s) | 139, 200, 747, 1587, 1884, 2907, 3691, 4201 |
| Bsp13I | TCCGGA | 1 cut(s) | 3589 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2241 |
| Bsp19I | CCATGG | 2 cut(s) | 271, 1815 |
| BspACI | CCGC | 5 cut(s) | 107, 215, 3635, 4582, 4784 |
| BspCNI | CTCAG | 2 cut(s) | 688, 1298 |
| BspDI | ATCGAT | 1 cut(s) | 1486 |
| BspEI | TCCGGA | 1 cut(s) | 3589 |
| BspFNI | CGCG | 1 cut(s) | 4582 |
| BspHI | TCATGA | 5 cut(s) | 777, 790, 1626, 2608, 4612 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 3 cut(s) | 112, 1522, 3005 |
| BspQI | GCTCTTC | 1 cut(s) | 1872 |
| BspT104I | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| BspT107I | GGYRCC | 3 cut(s) | 1859, 2014, 3420 |
| BspTI | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| BspTNI | GGTCTC | 2 cut(s) | 5, 3186 |
| BsrBI | CCGCTC | 1 cut(s) | 4784 |
| BsrDI | GCAATG | 4 cut(s) | 210, 735, 1827, 2601 |
| BsrFI | RCCGGY | 3 cut(s) | 2086, 2365, 3956 |
| BsrI | ACTGG | 2 cut(s) | 2452, 4783 |
| BssAI | RCCGGY | 3 cut(s) | 2086, 2365, 3956 |
| BssNI | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| BssT1I | CCWWGG | 9 cut(s) | 48, 271, 307, 395, 413, 729, 1815, 3449, 3626 |
| Bst2UI | CCWGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| Bst4CI | ACNGT | 6 cut(s) | 153, 365, 1250, 2401, 4003, 4324 |
| Bst6I | CTCTTC | 3 cut(s) | 954, 1872, 3608 |
| BstACI | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| BstAFI | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 134 |
| BstBI | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| BstC8I | GCNNGC | 2 cut(s) | 2548, 4190 |
| BstDSI | CCRYGG | 3 cut(s) | 271, 1815, 4323 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 52, 1627 |
| BstFNI | CGCG | 1 cut(s) | 4582 |
| BstH2I | RGCGCY | 2 cut(s) | 1863, 3031 |
| BstHHI | GCGC | 4 cut(s) | 1783, 1862, 3030, 4582 |
| BstMAI | GTCTC | 8 cut(s) | 5, 160, 1136, 1234, 1288, 2072, 3186, 4416 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 83, 134, 751, 1130, 1609, 2149, 3227, 4373, 4478 |
| BstNI | CCWGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| BstNSI | RCATGY | 6 cut(s) | 27, 559, 604, 3014, 3939, 4192 |
| BstSCI | CCNGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| BstSFI | CTRYAG | 4 cut(s) | 72, 2470, 2659, 3022 |
| BstSLI | GKGCMC | 2 cut(s) | 139, 2907 |
| BstUI | CGCG | 1 cut(s) | 4582 |
| BstV1I | GCAGC | 3 cut(s) | 58, 86, 3422 |
| BstV2I | GAAGAC | 1 cut(s) | 3065 |
| BstX2I | RGATCY | 4 cut(s) | 1106, 1324, 2950, 3365 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3177 |
| BstYI | RGATCY | 4 cut(s) | 1106, 1324, 2950, 3365 |
| Bsu15I | ATCGAT | 1 cut(s) | 1486 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1503 |
| BsuI | GTATCC | 3 cut(s) | 1737, 3459, 4302 |
| BsuTUI | ATCGAT | 1 cut(s) | 1486 |
| BtgI | CCRYGG | 3 cut(s) | 271, 1815, 4323 |
| BtsIMutI | CAGTG | 2 cut(s) | 2010, 2397 |
| BveI | ACCTGC | 3 cut(s) | 112, 1522, 3005 |
| Cac8I | GCNNGC | 2 cut(s) | 2548, 4190 |
| CciI | TCATGA | 5 cut(s) | 777, 790, 1626, 2608, 4612 |
| CfoI | GCGC | 4 cut(s) | 1783, 1862, 3030, 4582 |
| Cfr10I | RCCGGY | 3 cut(s) | 2086, 2365, 3956 |
| ClaI | ATCGAT | 1 cut(s) | 1486 |
| CseI | GACGC | 4 cut(s) | 2317, 3215, 3267, 3572 |
| Csp6I | GTAC | 8 cut(s) | 361, 1523, 1846, 2378, 2697, 3381, 3421, 4856 |
| CspAI | ACCGGT | 3 cut(s) | 2086, 2365, 3956 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4252, 4287 |
| CviQI | GTAC | 8 cut(s) | 361, 1523, 1846, 2378, 2697, 3381, 3421, 4856 |
| DinI | GGCGCC | 1 cut(s) | 1861 |
| DraI | TTTAAA | 1 cut(s) | 2856 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2774 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2774 |
| EaeI | YGGCCR | 1 cut(s) | 2548 |
| Eam1104I | CTCTTC | 3 cut(s) | 954, 1872, 3608 |
| EarI | CTCTTC | 3 cut(s) | 954, 1872, 3608 |
| Ecl136II | GAGCTC | 2 cut(s) | 745, 1882 |
| Eco130I | CCWWGG | 9 cut(s) | 48, 271, 307, 395, 413, 729, 1815, 3449, 3626 |
| Eco147I | AGGCCT | 1 cut(s) | 4568 |
| Eco24I | GRGCYC | 3 cut(s) | 747, 1587, 1884 |
| Eco31I | GGTCTC | 2 cut(s) | 5, 3186 |
| Eco53kI | GAGCTC | 2 cut(s) | 745, 1882 |
| Eco57I | CTGAAG | 1 cut(s) | 1986 |
| Eco81I | CCTNAGG | 1 cut(s) | 1503 |
| Eco88I | CYCGRG | 1 cut(s) | 2433 |
| EcoICRI | GAGCTC | 2 cut(s) | 745, 1882 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 52, 1627 |
| EcoO109I | RGGNCCY | 8 cut(s) | 278, 401, 964, 3060, 3285, 3968, 4043, 4328 |
| EcoRI | GAATTC | 3 cut(s) | 1018, 3991, 4787 |
| EcoRII | CCWGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| EcoT14I | CCWWGG | 9 cut(s) | 48, 271, 307, 395, 413, 729, 1815, 3449, 3626 |
| EcoT22I | ATGCAT | 3 cut(s) | 661, 1498, 3919 |
| EcoT38I | GRGCYC | 3 cut(s) | 747, 1587, 1884 |
| EgeI | GGCGCC | 1 cut(s) | 1861 |
| EheI | GGCGCC | 1 cut(s) | 1861 |
| ErhI | CCWWGG | 9 cut(s) | 48, 271, 307, 395, 413, 729, 1815, 3449, 3626 |
| Esp3I | CGTCTC | 1 cut(s) | 2072 |
| FaqI | GGGAC | 6 cut(s) | 387, 470, 774, 1605, 3171, 4341 |
| FauNDI | CATATG | 1 cut(s) | 3919 |
| FbaI | TGATCA | 3 cut(s) | 2524, 3403, 3763 |
| FblI | GTMKAC | 1 cut(s) | 909 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 75, 3411 |
| FriOI | GRGCYC | 3 cut(s) | 747, 1587, 1884 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 75, 3411 |
| FspI | TGCGCA | 1 cut(s) | 1782 |
| GlaI | GCGC | 4 cut(s) | 1782, 1861, 3029, 4581 |
| GluI | GCNGC | 3 cut(s) | 72, 75, 3411 |
| GsaI | CCCAGC | 1 cut(s) | 1556 |
| GsuI | CTGGAG | 2 cut(s) | 99, 4800 |
| HaeII | RGCGCY | 2 cut(s) | 1863, 3031 |
| HapII | CCGG | 5 cut(s) | 2042, 2087, 2366, 3590, 3957 |
| HgaI | GACGC | 4 cut(s) | 2317, 3215, 3267, 3572 |
| HhaI | GCGC | 4 cut(s) | 1783, 1862, 3030, 4582 |
| Hin1I | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| Hin6I | GCGC | 4 cut(s) | 1781, 1860, 3028, 4580 |
| HinP1I | GCGC | 4 cut(s) | 1781, 1860, 3028, 4580 |
| HincII | GTYRAC | 3 cut(s) | 1599, 2115, 4352 |
| HindII | GTYRAC | 3 cut(s) | 1599, 2115, 4352 |
| HindIII | AAGCTT | 3 cut(s) | 803, 2129, 4245 |
| HpaII | CCGG | 5 cut(s) | 2042, 2087, 2366, 3590, 3957 |
| HphI | GGTGA | 7 cut(s) | 93, 205, 226, 1550, 2305, 2355, 4807 |
| Hpy166II | GTNNAC | 8 cut(s) | 247, 477, 772, 910, 1599, 2115, 4274, 4352 |
| Hpy8I | GTNNAC | 8 cut(s) | 247, 477, 772, 910, 1599, 2115, 4274, 4352 |
| HpyCH4III | ACNGT | 6 cut(s) | 153, 365, 1250, 2401, 4003, 4324 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 83, 134, 751, 1130, 1609, 2149, 3227, 4373, 4478 |
| Hsp92I | GRCGYC | 3 cut(s) | 1860, 2328, 3564 |
| HspAI | GCGC | 4 cut(s) | 1781, 1860, 3028, 4580 |
| KasI | GGCGCC | 1 cut(s) | 1859 |
| KflI | GGGWCCC | 1 cut(s) | 401 |
| Kpn2I | TCCGGA | 1 cut(s) | 3589 |
| KpnI | GGTACC | 1 cut(s) | 3424 |
| Ksp22I | TGATCA | 3 cut(s) | 2524, 3403, 3763 |
| LguI | GCTCTTC | 1 cut(s) | 1872 |
| LmnI | GCTCC | 9 cut(s) | 83, 1222, 1394, 1582, 2237, 2319, 3139, 4462, 4781 |
| Lsp1109I | GCAGC | 3 cut(s) | 58, 86, 3422 |
| LweI | GCATC | 9 cut(s) | 58, 646, 1801, 2130, 3218, 3286, 3904, 3935, 4354 |
| MbiI | CCGCTC | 1 cut(s) | 4784 |
| MfeI | CAATTG | 4 cut(s) | 221, 2163, 3222, 4401 |
| MflI | RGATCY | 4 cut(s) | 1106, 1324, 2950, 3365 |
| MhlI | GDGCHC | 8 cut(s) | 139, 200, 747, 1587, 1884, 2907, 3691, 4201 |
| MlsI | TGGCCA | 1 cut(s) | 2550 |
| MluNI | TGGCCA | 1 cut(s) | 2550 |
| Mly113I | GGCGCC | 1 cut(s) | 1860 |
| MlyI | GAGTC | 3 cut(s) | 33, 4357, 4777 |
| MmeI | TCCRAC | 6 cut(s) | 544, 834, 861, 2150, 3443, 3858 |
| Mox20I | TGGCCA | 1 cut(s) | 2550 |
| Mph1103I | ATGCAT | 3 cut(s) | 661, 1498, 3919 |
| MroI | TCCGGA | 1 cut(s) | 3589 |
| MroXI | GAANNNNTTC | 2 cut(s) | 492, 3122 |
| MscI | TGGCCA | 1 cut(s) | 2550 |
| MslI | CAYNNNNRTG | 4 cut(s) | 795, 1461, 2402, 2981 |
| Msp20I | TGGCCA | 1 cut(s) | 2550 |
| MspA1I | CMGCKG | 3 cut(s) | 77, 1289, 1556 |
| MspCI | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| MspI | CCGG | 5 cut(s) | 2042, 2087, 2366, 3590, 3957 |
| MspR9I | CCNGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| MunI | CAATTG | 4 cut(s) | 221, 2163, 3222, 4401 |
| Mva1269I | GAATGC | 5 cut(s) | 374, 1311, 2416, 2673, 3122 |
| MvaI | CCWGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| MvnI | CGCG | 1 cut(s) | 4582 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 83, 134, 751, 1130, 1609, 2149, 3227, 4373, 4478 |
| NarI | GGCGCC | 1 cut(s) | 1860 |
| NcoI | CCATGG | 2 cut(s) | 271, 1815 |
| NdeI | CATATG | 1 cut(s) | 3919 |
| NmuCI | GTSAC | 6 cut(s) | 99, 988, 2443, 2870, 3203, 3842 |
| NsbI | TGCGCA | 1 cut(s) | 1782 |
| NsiI | ATGCAT | 3 cut(s) | 661, 1498, 3919 |
| NspI | RCATGY | 6 cut(s) | 27, 559, 604, 3014, 3939, 4192 |
| NspV | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| OliI | CACNNNNGTG | 2 cut(s) | 2402, 2981 |
| PaeI | GCATGC | 1 cut(s) | 4192 |
| PaeR7I | CTCGAG | 1 cut(s) | 2433 |
| PagI | TCATGA | 5 cut(s) | 777, 790, 1626, 2608, 4612 |
| PaqCI | CACCTGC | 1 cut(s) | 112 |
| PceI | AGGCCT | 1 cut(s) | 4568 |
| PciI | ACATGT | 2 cut(s) | 23, 3935 |
| PciSI | GCTCTTC | 1 cut(s) | 1872 |
| PctI | GAATGC | 5 cut(s) | 374, 1311, 2416, 2673, 3122 |
| PdmI | GAANNNNTTC | 2 cut(s) | 492, 3122 |
| PflFI | GACNNNGTC | 2 cut(s) | 1463, 4806 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 893 |
| PfoI | TCCNGGA | 1 cut(s) | 3281 |
| PinAI | ACCGGT | 3 cut(s) | 2086, 2365, 3956 |
| PkrI | GCNGC | 3 cut(s) | 73, 76, 3412 |
| PleI | GAGTC | 3 cut(s) | 33, 4356, 4776 |
| PluTI | GGCGCC | 1 cut(s) | 1863 |
| PpsI | GAGTC | 3 cut(s) | 33, 4356, 4776 |
| PpuMI | RGGWCCY | 7 cut(s) | 278, 401, 964, 3285, 3968, 4043, 4328 |
| PscI | ACATGT | 2 cut(s) | 23, 3935 |
| PshBI | ATTAAT | 1 cut(s) | 3770 |
| PsiI | TTATAA | 1 cut(s) | 4160 |
| Psp124BI | GAGCTC | 2 cut(s) | 747, 1884 |
| Psp1406I | AACGTT | 4 cut(s) | 2830, 3522, 3665, 4354 |
| Psp5II | RGGWCCY | 7 cut(s) | 278, 401, 964, 3285, 3968, 4043, 4328 |
| Psp6I | CCWGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| PspFI | CCCAGC | 1 cut(s) | 1552 |
| PspGI | CCWGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| PspPPI | RGGWCCY | 7 cut(s) | 278, 401, 964, 3285, 3968, 4043, 4328 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4687, 4719 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| PsuI | RGATCY | 4 cut(s) | 1106, 1324, 2950, 3365 |
| PsyI | GACNNNGTC | 2 cut(s) | 1463, 4806 |
| PvuII | CAGCTG | 3 cut(s) | 77, 1289, 1556 |
| RsaI | GTAC | 8 cut(s) | 362, 1524, 1847, 2379, 2698, 3382, 3422, 4857 |
| RsaNI | GTAC | 8 cut(s) | 361, 1523, 1846, 2378, 2697, 3381, 3421, 4856 |
| RseI | CAYNNNNRTG | 4 cut(s) | 795, 1461, 2402, 2981 |
| SacI | GAGCTC | 2 cut(s) | 747, 1884 |
| SapI | GCTCTTC | 1 cut(s) | 1872 |
| SatI | GCNGC | 3 cut(s) | 72, 75, 3411 |
| ScaI | AGTACT | 1 cut(s) | 362 |
| SchI | GAGTC | 3 cut(s) | 33, 4357, 4777 |
| ScrFI | CCNGG | 7 cut(s) | 447, 1329, 2694, 3283, 3614, 4126, 4692 |
| SduI | GDGCHC | 8 cut(s) | 139, 200, 747, 1587, 1884, 2907, 3691, 4201 |
| SfaNI | GCATC | 9 cut(s) | 58, 646, 1801, 2130, 3218, 3286, 3904, 3935, 4354 |
| SfcI | CTRYAG | 4 cut(s) | 72, 2470, 2659, 3022 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1130 |
| SfoI | GGCGCC | 1 cut(s) | 1861 |
| Sfr274I | CTCGAG | 1 cut(s) | 2433 |
| SfuI | TTCGAA | 4 cut(s) | 431, 1371, 2793, 4558 |
| SlaI | CTCGAG | 1 cut(s) | 2433 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 795, 1461, 2402, 2981 |
| SpeI | ACTAGT | 3 cut(s) | 200, 686, 1361 |
| SphI | GCATGC | 1 cut(s) | 4192 |
| SseBI | AGGCCT | 1 cut(s) | 4568 |
| SsiI | CCGC | 5 cut(s) | 107, 215, 3635, 4582, 4784 |
| SspDI | GGCGCC | 1 cut(s) | 1859 |
| SspI | AATATT | 3 cut(s) | 948, 3755, 4843 |
| SstI | GAGCTC | 2 cut(s) | 747, 1884 |
| StuI | AGGCCT | 1 cut(s) | 4568 |
| StyD4I | CCNGG | 7 cut(s) | 445, 1327, 2692, 3281, 3612, 4124, 4690 |
| StyI | CCWWGG | 9 cut(s) | 48, 271, 307, 395, 413, 729, 1815, 3449, 3626 |
| TaaI | ACNGT | 6 cut(s) | 153, 365, 1250, 2401, 4003, 4324 |
| TaqI | TCGA | 9 cut(s) | 431, 1371, 1486, 1982, 2434, 2455, 2793, 4008, 4558 |
| TatI | WGTACW | 2 cut(s) | 360, 1522 |
| TscAI | CASTG | 2 cut(s) | 2010, 2404 |
| TseFI | GTSAC | 6 cut(s) | 99, 988, 2443, 2870, 3203, 3842 |
| TseI | GCWGC | 3 cut(s) | 71, 74, 3410 |
| Tsp45I | GTSAC | 6 cut(s) | 99, 988, 2443, 2870, 3203, 3842 |
| TspGWI | ACGGA | 3 cut(s) | 335, 1901, 2984 |
| TspRI | CASTG | 2 cut(s) | 2010, 2404 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1463, 4806 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 893 |
| Vha464I | CTTAAG | 6 cut(s) | 1451, 2030, 2144, 2803, 3704, 4811 |
| VspI | ATTAAT | 1 cut(s) | 3770 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 52, 1627 |
| XbaI | TCTAGA | 4 cut(s) | 2023, 2569, 4673, 4706 |
| XceI | RCATGY | 6 cut(s) | 27, 559, 604, 3014, 3939, 4192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3574 |
| XhoI | CTCGAG | 1 cut(s) | 2433 |
| XmaJI | CCTAGG | 1 cut(s) | 3449 |
| XmiI | GTMKAC | 1 cut(s) | 909 |
| XmnI | GAANNNNTTC | 2 cut(s) | 492, 3122 |
| ZrmI | AGTACT | 1 cut(s) | 362 |
| Zsp2I | ATGCAT | 3 cut(s) | 661, 1498, 3919 |