protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 753 - 909 | 3.3e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 948 - 1046 | 2.6e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 973 - 1076 | 1.3e-37 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 1228 - 1321 | 1.4e-15 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3824, 4092 |
| AarI | CACCTGC | 1 cut(s) | 1336 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| AatII | GACGTC | 2 cut(s) | 809, 2083 |
| Acc16I | TGCGCA | 1 cut(s) | 1596 |
| Acc36I | ACCTGC | 3 cut(s) | 521, 1336, 2747 |
| Acc65I | GGTACC | 2 cut(s) | 270, 3162 |
| AccB1I | GGYRCC | 5 cut(s) | 270, 656, 1673, 1828, 3162 |
| AccI | GTMKAC | 3 cut(s) | 512, 723, 2815 |
| AccIII | TCCGGA | 1 cut(s) | 3331 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclI | AACGTT | 7 cut(s) | 360, 1731, 1925, 2465, 3264, 3407, 4054 |
| AcoI | YGGCCR | 1 cut(s) | 2362 |
| AcuI | CTGAAG | 1 cut(s) | 1800 |
| AcvI | CACGTG | 2 cut(s) | 128, 3931 |
| AcyI | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| AdeI | CACNNNGTG | 1 cut(s) | 1704 |
| AfaI | GTAC | 6 cut(s) | 272, 1338, 2512, 2643, 3124, 3164 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 50, 1390, 1443, 2307, 2478 |
| AflII | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| AflIII | ACRYGT | 2 cut(s) | 125, 3599 |
| AgeI | ACCGGT | 1 cut(s) | 3620 |
| AjiI | CACGTC | 2 cut(s) | 392, 2892 |
| AjnI | CCWGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| AleI | CACNNNNGTG | 1 cut(s) | 2723 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3484, 3516 |
| Alw21I | GWGCWC | 2 cut(s) | 373, 1264 |
| Alw26I | GTCTC | 8 cut(s) | 813, 950, 1048, 1102, 1886, 1957, 2928, 4010 |
| Alw44I | GTGCAC | 2 cut(s) | 369, 1260 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| Aor13HI | TCCGGA | 1 cut(s) | 3331 |
| AoxI | GGCC | 9 cut(s) | 75, 107, 936, 945, 996, 2362, 2801, 2970, 4028 |
| ApaLI | GTGCAC | 2 cut(s) | 369, 1260 |
| ApeKI | GCWGC | 2 cut(s) | 11, 3152 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2256, 2288 |
| AseI | ATTAAT | 1 cut(s) | 3512 |
| AsiGI | ACCGGT | 1 cut(s) | 3620 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2864, 3102 |
| Asp718I | GGTACC | 2 cut(s) | 270, 3162 |
| AspA2I | CCTAGG | 2 cut(s) | 281, 3191 |
| AspLEI | GCGC | 2 cut(s) | 1597, 2772 |
| AsuHPI | GGTGA | 4 cut(s) | 320, 1090, 1364, 2169 |
| AsuII | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| AvaII | GGWCC | 6 cut(s) | 136, 778, 1455, 2734, 3027, 3707 |
| AvrII | CCTAGG | 2 cut(s) | 281, 3191 |
| AxyI | CCTNAGG | 2 cut(s) | 1317, 1686 |
| BaeGI | GKGCMC | 3 cut(s) | 373, 1264, 3257 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 254, 262, 287, 295, 3114, 3147 |
| BamHI | GGATCC | 1 cut(s) | 1138 |
| BanI | GGYRCC | 5 cut(s) | 270, 656, 1673, 1828, 3162 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3294, 3326 |
| BbrPI | CACGTG | 2 cut(s) | 128, 3931 |
| BbsI | GAAGAC | 1 cut(s) | 3309 |
| Bbv12I | GWGCWC | 2 cut(s) | 373, 1264 |
| BbvI | GCAGC | 2 cut(s) | 23, 3164 |
| BceAI | ACGGC | 4 cut(s) | 677, 1464, 2660, 2957 |
| BciT130I | CCWGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| BciVI | GTATCC | 3 cut(s) | 1551, 3201, 4002 |
| BclI | TGATCA | 4 cut(s) | 492, 2338, 3145, 3505 |
| BcoDI | GTCTC | 8 cut(s) | 813, 950, 1048, 1102, 1886, 1957, 2928, 4010 |
| BfmI | CTRYAG | 3 cut(s) | 2284, 2473, 2764 |
| BfoI | RGCGCY | 1 cut(s) | 2773 |
| BfrI | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| BfuAI | ACCTGC | 3 cut(s) | 521, 1336, 2747 |
| BfuI | GTATCC | 3 cut(s) | 1551, 3201, 4002 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 944, 2969 |
| BglII | AGATCT | 2 cut(s) | 1693, 2692 |
| BisI | GCNGC | 3 cut(s) | 12, 48, 3153 |
| BlnI | CCTAGG | 2 cut(s) | 281, 3191 |
| BlsI | GCNGC | 3 cut(s) | 13, 49, 3154 |
| Bme1390I | CCNGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| Bme18I | GGWCC | 6 cut(s) | 136, 778, 1455, 2734, 3027, 3707 |
| BmgBI | CACGTC | 2 cut(s) | 392, 2892 |
| BmrFI | CCNGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| BmsI | GCATC | 8 cut(s) | 1253, 1944, 2151, 2334, 2472, 3028, 3599, 4054 |
| BpiI | GAAGAC | 1 cut(s) | 3309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1082, 1114 |
| Bpu10I | CCTNAGC | 2 cut(s) | 732, 3917 |
| Bpu14I | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| Bsa29I | ATCGAT | 1 cut(s) | 1300 |
| BsaAI | YACGTR | 2 cut(s) | 128, 3931 |
| BsaHI | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| BsaI | GGTCTC | 2 cut(s) | 950, 2928 |
| BsaJI | CCNNGG | 8 cut(s) | 281, 792, 1142, 1629, 2506, 3191, 3368, 4023 |
| BsaWI | WCCGGW | 3 cut(s) | 1855, 3331, 3620 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1494, 1524, 4039, 4069 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 50, 1390, 1443, 2307, 2478 |
| Bse118I | RCCGGY | 2 cut(s) | 2360, 3620 |
| Bse1I | ACTGG | 2 cut(s) | 2180, 2266 |
| Bse21I | CCTNAGG | 2 cut(s) | 1317, 1686 |
| Bse3DI | GCAATG | 3 cut(s) | 893, 1641, 2415 |
| BseAI | TCCGGA | 1 cut(s) | 3331 |
| BseBI | CCWGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| BseCI | ATCGAT | 1 cut(s) | 1300 |
| BseDI | CCNNGG | 8 cut(s) | 281, 792, 1142, 1629, 2506, 3191, 3368, 4023 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 50, 1390, 1443, 2307, 2478 |
| BseMI | GCAATG | 3 cut(s) | 893, 1641, 2415 |
| BseMII | CTCAG | 4 cut(s) | 573, 1113, 2261, 2967 |
| BseNI | ACTGG | 2 cut(s) | 2180, 2266 |
| BseRI | GAGGAG | 4 cut(s) | 782, 1409, 1634, 2060 |
| BseSI | GKGCMC | 3 cut(s) | 373, 1264, 3257 |
| BseXI | GCAGC | 2 cut(s) | 23, 3164 |
| BseYI | CCCAGC | 1 cut(s) | 1366 |
| BsgI | GTGCAG | 2 cut(s) | 1364, 2880 |
| BshFI | GGCC | 9 cut(s) | 77, 109, 938, 947, 998, 2364, 2803, 2972, 4030 |
| BshNI | GGYRCC | 5 cut(s) | 270, 656, 1673, 1828, 3162 |
| BshTI | ACCGGT | 1 cut(s) | 3620 |
| BshVI | ATCGAT | 1 cut(s) | 1300 |
| BsiHKAI | GWGCWC | 2 cut(s) | 373, 1264 |
| BsiSI | CCGG | 4 cut(s) | 1856, 2361, 3332, 3621 |
| BslFI | GGGAC | 3 cut(s) | 1419, 3005, 3720 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 50, 1390, 1443, 2307, 2478 |
| BsmAI | GTCTC | 8 cut(s) | 813, 950, 1048, 1102, 1886, 1957, 2928, 4010 |
| BsmBI | CGTCTC | 3 cut(s) | 813, 1102, 1886 |
| BsmFI | GGGAC | 3 cut(s) | 1419, 3005, 3720 |
| BsmI | GAATGC | 2 cut(s) | 2230, 2864 |
| BsnI | GGCC | 9 cut(s) | 77, 109, 938, 947, 998, 2364, 2803, 2972, 4030 |
| Bso31I | GGTCTC | 2 cut(s) | 950, 2928 |
| Bsp119I | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| Bsp1286I | GDGCHC | 3 cut(s) | 373, 1264, 3257 |
| Bsp13I | TCCGGA | 1 cut(s) | 3331 |
| Bsp19I | CCATGG | 1 cut(s) | 1629 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 9 cut(s) | 77, 109, 938, 947, 998, 2364, 2803, 2972, 4030 |
| BspCNI | CTCAG | 4 cut(s) | 574, 1112, 2260, 2966 |
| BspDI | ATCGAT | 1 cut(s) | 1300 |
| BspEI | TCCGGA | 1 cut(s) | 3331 |
| BspHI | TCATGA | 3 cut(s) | 631, 1440, 2422 |
| BspMI | ACCTGC | 3 cut(s) | 521, 1336, 2747 |
| BspT104I | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| BspT107I | GGYRCC | 5 cut(s) | 270, 656, 1673, 1828, 3162 |
| BspTI | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| BspTNI | GGTCTC | 2 cut(s) | 950, 2928 |
| BsrDI | GCAATG | 3 cut(s) | 893, 1641, 2415 |
| BsrFI | RCCGGY | 2 cut(s) | 2360, 3620 |
| BsrI | ACTGG | 2 cut(s) | 2180, 2266 |
| BssAI | RCCGGY | 2 cut(s) | 2360, 3620 |
| BssECI | CCNNGG | 8 cut(s) | 281, 792, 1142, 1629, 2506, 3191, 3368, 4023 |
| BssNI | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| BssT1I | CCWWGG | 5 cut(s) | 281, 792, 1629, 3191, 3368 |
| Bst2UI | CCWGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| Bst4CI | ACNGT | 4 cut(s) | 1064, 2215, 2257, 4024 |
| Bst6I | CTCTTC | 3 cut(s) | 768, 1918, 3350 |
| BstACI | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| BstAFI | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| BstBAI | YACGTR | 2 cut(s) | 128, 3931 |
| BstBI | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| BstC8I | GCNNGC | 6 cut(s) | 45, 684, 2362, 3429, 3854, 3978 |
| BstDSI | CCRYGG | 2 cut(s) | 1629, 4023 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1441, 2476 |
| BstH2I | RGCGCY | 1 cut(s) | 2773 |
| BstHHI | GCGC | 2 cut(s) | 1597, 2772 |
| BstMAI | GTCTC | 8 cut(s) | 813, 950, 1048, 1102, 1886, 1957, 2928, 4010 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 527, 944, 1423, 2969, 3437, 4073 |
| BstNI | CCWGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| BstNSI | RCATGY | 5 cut(s) | 197, 2756, 3431, 3603, 3856 |
| BstSCI | CCNGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| BstSFI | CTRYAG | 3 cut(s) | 2284, 2473, 2764 |
| BstSLI | GKGCMC | 3 cut(s) | 373, 1264, 3257 |
| BstV1I | GCAGC | 2 cut(s) | 23, 3164 |
| BstV2I | GAAGAC | 1 cut(s) | 3309 |
| BstX2I | RGATCY | 5 cut(s) | 23, 920, 1138, 1693, 2692 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2919 |
| BstYI | RGATCY | 5 cut(s) | 23, 920, 1138, 1693, 2692 |
| Bsu15I | ATCGAT | 1 cut(s) | 1300 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1317, 1686 |
| BsuI | GTATCC | 3 cut(s) | 1551, 3201, 4002 |
| BsuRI | GGCC | 9 cut(s) | 77, 109, 938, 947, 998, 2364, 2803, 2972, 4030 |
| BsuTUI | ATCGAT | 1 cut(s) | 1300 |
| BtgI | CCRYGG | 2 cut(s) | 1629, 4023 |
| BtrI | CACGTC | 2 cut(s) | 392, 2892 |
| BtsIMutI | CAGTG | 1 cut(s) | 1824 |
| BveI | ACCTGC | 3 cut(s) | 521, 1336, 2747 |
| Cac8I | GCNNGC | 6 cut(s) | 45, 684, 2362, 3429, 3854, 3978 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| CciI | TCATGA | 3 cut(s) | 631, 1440, 2422 |
| CfoI | GCGC | 2 cut(s) | 1597, 2772 |
| Cfr10I | RCCGGY | 2 cut(s) | 2360, 3620 |
| ClaI | ATCGAT | 1 cut(s) | 1300 |
| CseI | GACGC | 4 cut(s) | 1200, 1634, 2957, 3314 |
| Csp6I | GTAC | 6 cut(s) | 271, 1337, 2511, 2642, 3123, 3163 |
| CspAI | ACCGGT | 1 cut(s) | 3620 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3452, 3487 |
| CviQI | GTAC | 6 cut(s) | 271, 1337, 2511, 2642, 3123, 3163 |
| DraIII | CACNNNGTG | 1 cut(s) | 1704 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2588 |
| EaeI | YGGCCR | 1 cut(s) | 2362 |
| Eam1104I | CTCTTC | 3 cut(s) | 768, 1918, 3350 |
| EarI | CTCTTC | 3 cut(s) | 768, 1918, 3350 |
| Eco130I | CCWWGG | 5 cut(s) | 281, 792, 1629, 3191, 3368 |
| Eco31I | GGTCTC | 2 cut(s) | 950, 2928 |
| Eco32I | GATATC | 1 cut(s) | 1999 |
| Eco47I | GGWCC | 6 cut(s) | 136, 778, 1455, 2734, 3027, 3707 |
| Eco57I | CTGAAG | 1 cut(s) | 1800 |
| Eco72I | CACGTG | 2 cut(s) | 128, 3931 |
| Eco81I | CCTNAGG | 2 cut(s) | 1317, 1686 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1441, 2476 |
| EcoO109I | RGGNCCY | 5 cut(s) | 75, 778, 2802, 3027, 3707 |
| EcoRI | GAATTC | 2 cut(s) | 1493, 3655 |
| EcoRII | CCWGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| EcoRV | GATATC | 1 cut(s) | 1999 |
| EcoT14I | CCWWGG | 5 cut(s) | 281, 792, 1629, 3191, 3368 |
| EcoT22I | ATGCAT | 4 cut(s) | 1246, 1312, 3583, 4069 |
| ErhI | CCWWGG | 5 cut(s) | 281, 792, 1629, 3191, 3368 |
| Esp3I | CGTCTC | 3 cut(s) | 813, 1102, 1886 |
| FaqI | GGGAC | 3 cut(s) | 1419, 3005, 3720 |
| FauNDI | CATATG | 1 cut(s) | 3583 |
| FbaI | TGATCA | 4 cut(s) | 492, 2338, 3145, 3505 |
| FblI | GTMKAC | 3 cut(s) | 512, 723, 2815 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 48, 3153 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 48, 3153 |
| FspI | TGCGCA | 1 cut(s) | 1596 |
| GlaI | GCGC | 2 cut(s) | 1596, 2771 |
| GluI | GCNGC | 3 cut(s) | 12, 48, 3153 |
| GsaI | CCCAGC | 1 cut(s) | 1370 |
| HaeII | RGCGCY | 1 cut(s) | 2773 |
| HaeIII | GGCC | 9 cut(s) | 77, 109, 938, 947, 998, 2364, 2803, 2972, 4030 |
| HapII | CCGG | 4 cut(s) | 1856, 2361, 3332, 3621 |
| HgaI | GACGC | 4 cut(s) | 1200, 1634, 2957, 3314 |
| HhaI | GCGC | 2 cut(s) | 1597, 2772 |
| Hin1I | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| Hin6I | GCGC | 2 cut(s) | 1595, 2770 |
| HinP1I | GCGC | 2 cut(s) | 1595, 2770 |
| HincII | GTYRAC | 5 cut(s) | 34, 247, 759, 1413, 4052 |
| HindII | GTYRAC | 5 cut(s) | 34, 247, 759, 1413, 4052 |
| HindIII | AAGCTT | 1 cut(s) | 519 |
| HinfI | GANTC | 8 cut(s) | 82, 601, 1182, 1822, 2162, 3351, 3800, 4048 |
| HpaI | GTTAAC | 1 cut(s) | 247 |
| HpaII | CCGG | 4 cut(s) | 1856, 2361, 3332, 3621 |
| HphI | GGTGA | 4 cut(s) | 320, 1090, 1364, 2169 |
| HpyCH4III | ACNGT | 4 cut(s) | 1064, 2215, 2257, 4024 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 527, 944, 1423, 2969, 3437, 4073 |
| Hsp92I | GRCGYC | 5 cut(s) | 806, 1626, 2080, 2949, 3306 |
| HspAI | GCGC | 2 cut(s) | 1595, 2770 |
| Kpn2I | TCCGGA | 1 cut(s) | 3331 |
| KpnI | GGTACC | 2 cut(s) | 274, 3166 |
| KroI | GCCGGC | 1 cut(s) | 2360 |
| KroNI | GCCGGC | 1 cut(s) | 2362 |
| Ksp22I | TGATCA | 4 cut(s) | 492, 2338, 3145, 3505 |
| KspAI | GTTAAC | 1 cut(s) | 247 |
| LmnI | GCTCC | 5 cut(s) | 40, 1396, 2051, 2133, 2881 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 3164 |
| LweI | GCATC | 8 cut(s) | 1253, 1944, 2151, 2334, 2472, 3028, 3599, 4054 |
| MaeIII | GTNAC | 9 cut(s) | 645, 694, 802, 1896, 2257, 2399, 2621, 2945, 3931 |
| MfeI | CAATTG | 3 cut(s) | 1289, 1977, 4101 |
| MflI | RGATCY | 5 cut(s) | 23, 920, 1138, 1693, 2692 |
| MhlI | GDGCHC | 3 cut(s) | 373, 1264, 3257 |
| MlyI | GAGTC | 3 cut(s) | 610, 2156, 4057 |
| MmeI | TCCRAC | 5 cut(s) | 286, 323, 409, 1964, 3185 |
| Mph1103I | ATGCAT | 4 cut(s) | 1246, 1312, 3583, 4069 |
| MroI | TCCGGA | 1 cut(s) | 3331 |
| MroNI | GCCGGC | 1 cut(s) | 2360 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2864, 3102 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1275, 2723 |
| MspA1I | CMGCKG | 2 cut(s) | 1103, 1370 |
| MspCI | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| MspI | CCGG | 4 cut(s) | 1856, 2361, 3332, 3621 |
| MspR9I | CCNGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| MunI | CAATTG | 3 cut(s) | 1289, 1977, 4101 |
| Mva1269I | GAATGC | 2 cut(s) | 2230, 2864 |
| MvaI | CCWGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 527, 944, 1423, 2969, 3437, 4073 |
| NaeI | GCCGGC | 1 cut(s) | 2362 |
| NcoI | CCATGG | 1 cut(s) | 1629 |
| NdeI | CATATG | 1 cut(s) | 3583 |
| NgoMIV | GCCGGC | 1 cut(s) | 2360 |
| NmuCI | GTSAC | 5 cut(s) | 694, 802, 2257, 2945, 3931 |
| NsbI | TGCGCA | 1 cut(s) | 1596 |
| NsiI | ATGCAT | 4 cut(s) | 1246, 1312, 3583, 4069 |
| NspI | RCATGY | 5 cut(s) | 197, 2756, 3431, 3603, 3856 |
| NspV | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| OliI | CACNNNNGTG | 1 cut(s) | 2723 |
| PaeI | GCATGC | 2 cut(s) | 3431, 3856 |
| PagI | TCATGA | 3 cut(s) | 631, 1440, 2422 |
| PaqCI | CACCTGC | 1 cut(s) | 1336 |
| PciI | ACATGT | 1 cut(s) | 3599 |
| PctI | GAATGC | 2 cut(s) | 2230, 2864 |
| PdiI | GCCGGC | 1 cut(s) | 2362 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2864, 3102 |
| PfeI | GAWTC | 5 cut(s) | 82, 1182, 1822, 3351, 3800 |
| PfoI | TCCNGGA | 1 cut(s) | 313 |
| PinAI | ACCGGT | 1 cut(s) | 3620 |
| PkrI | GCNGC | 3 cut(s) | 13, 49, 3154 |
| PleI | GAGTC | 3 cut(s) | 609, 2156, 4056 |
| PmaCI | CACGTG | 2 cut(s) | 128, 3931 |
| PmlI | CACGTG | 2 cut(s) | 128, 3931 |
| PpsI | GAGTC | 3 cut(s) | 609, 2156, 4056 |
| Ppu21I | YACGTR | 2 cut(s) | 128, 3931 |
| PpuMI | RGGWCCY | 3 cut(s) | 778, 3027, 3707 |
| PscI | ACATGT | 1 cut(s) | 3599 |
| PshBI | ATTAAT | 1 cut(s) | 3512 |
| PsiI | TTATAA | 2 cut(s) | 3824, 4092 |
| Psp1406I | AACGTT | 7 cut(s) | 360, 1731, 1925, 2465, 3264, 3407, 4054 |
| Psp5II | RGGWCCY | 3 cut(s) | 778, 3027, 3707 |
| Psp6I | CCWGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| PspCI | CACGTG | 2 cut(s) | 128, 3931 |
| PspFI | CCCAGC | 1 cut(s) | 1366 |
| PspGI | CCWGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| PspPPI | RGGWCCY | 3 cut(s) | 778, 3027, 3707 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 5 cut(s) | 23, 920, 1138, 1693, 2692 |
| PvuII | CAGCTG | 2 cut(s) | 1103, 1370 |
| RsaI | GTAC | 6 cut(s) | 272, 1338, 2512, 2643, 3124, 3164 |
| RsaNI | GTAC | 6 cut(s) | 271, 1337, 2511, 2642, 3123, 3163 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1275, 2723 |
| SatI | GCNGC | 3 cut(s) | 12, 48, 3153 |
| SchI | GAGTC | 3 cut(s) | 610, 2156, 4057 |
| ScrFI | CCNGG | 5 cut(s) | 315, 1143, 2508, 3356, 3790 |
| SduI | GDGCHC | 3 cut(s) | 373, 1264, 3257 |
| SfaNI | GCATC | 8 cut(s) | 1253, 1944, 2151, 2334, 2472, 3028, 3599, 4054 |
| SfcI | CTRYAG | 3 cut(s) | 2284, 2473, 2764 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 944 |
| SfuI | TTCGAA | 5 cut(s) | 299, 446, 1185, 1527, 2607 |
| SinI | GGWCC | 6 cut(s) | 136, 778, 1455, 2734, 3027, 3707 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1275, 2723 |
| SphI | GCATGC | 2 cut(s) | 3431, 3856 |
| SsiI | CCGC | 1 cut(s) | 47 |
| StyD4I | CCNGG | 5 cut(s) | 313, 1141, 2506, 3354, 3788 |
| StyI | CCWWGG | 5 cut(s) | 281, 792, 1629, 3191, 3368 |
| TaaI | ACNGT | 4 cut(s) | 1064, 2215, 2257, 4024 |
| TaqI | TCGA | 9 cut(s) | 299, 446, 1185, 1300, 1497, 1527, 2269, 2607, 3672 |
| TatI | WGTACW | 1 cut(s) | 1336 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 5 cut(s) | 82, 1182, 1822, 3351, 3800 |
| TscAI | CASTG | 1 cut(s) | 1824 |
| TseFI | GTSAC | 5 cut(s) | 694, 802, 2257, 2945, 3931 |
| TseI | GCWGC | 2 cut(s) | 11, 3152 |
| Tsp45I | GTSAC | 5 cut(s) | 694, 802, 2257, 2945, 3931 |
| TspGWI | ACGGA | 1 cut(s) | 2726 |
| TspRI | CASTG | 1 cut(s) | 1824 |
| Vha464I | CTTAAG | 4 cut(s) | 1546, 1958, 2617, 3446 |
| VneI | GTGCAC | 2 cut(s) | 369, 1260 |
| VpaK11BI | GGWCC | 6 cut(s) | 136, 778, 1455, 2734, 3027, 3707 |
| VspI | ATTAAT | 1 cut(s) | 3512 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1441, 2476 |
| XbaI | TCTAGA | 1 cut(s) | 3569 |
| XceI | RCATGY | 5 cut(s) | 197, 2756, 3431, 3603, 3856 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3316 |
| XmaJI | CCTAGG | 2 cut(s) | 281, 3191 |
| XmiI | GTMKAC | 3 cut(s) | 512, 723, 2815 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2864, 3102 |
| ZraI | GACGTC | 2 cut(s) | 807, 2081 |
| Zsp2I | ATGCAT | 4 cut(s) | 1246, 1312, 3583, 4069 |