protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 86 - 178 | 6.1e-18 | Retrotransposon gag protein |
| RVT_1 | PF00078 | 938 - 1091 | 2.5e-26 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1154 - 1252 | 5.4e-33 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1179 - 1282 | 1.5e-37 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1382 - 1438 | 1.3e-10 | Integrase zinc binding domain |
| rve | PF00665 | 1460 - 1553 | 2.9e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 272 |
| Acc36I | ACCTGC | 3 cut(s) | 3365, 3378, 4235 |
| AccB1I | GGYRCC | 1 cut(s) | 3514 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 53, 485, 553, 3238 |
| AccBSI | CCGCTC | 1 cut(s) | 1200 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccIII | TCCGGA | 1 cut(s) | 3949 |
| AclI | AACGTT | 2 cut(s) | 3067, 4626 |
| AcoI | YGGCCR | 2 cut(s) | 3367, 5128 |
| AcuI | CTGAAG | 4 cut(s) | 164, 206, 266, 4209 |
| AcyI | GRCGYC | 2 cut(s) | 2005, 2626 |
| AflII | CTTAAG | 1 cut(s) | 1706 |
| AflIII | ACRYGT | 1 cut(s) | 2996 |
| AgeI | ACCGGT | 1 cut(s) | 5133 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 435 |
| AjnI | CCWGG | 5 cut(s) | 886, 1002, 1714, 2347, 3530 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2613, 2645 |
| AleI | CACNNNNGTG | 1 cut(s) | 3341 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2238, 2239, 2270, 2271 |
| Alw21I | GWGCWC | 9 cut(s) | 19, 773, 1343, 1471, 1619, 2046, 3558, 3693, 4863 |
| Alw26I | GTCTC | 7 cut(s) | 422, 1621, 1658, 1675, 2294, 2479, 3935 |
| Alw44I | GTGCAC | 2 cut(s) | 1615, 2042 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4154 |
| Ama87I | CYCGRG | 2 cut(s) | 272, 2610 |
| Aor13HI | TCCGGA | 1 cut(s) | 3949 |
| AoxI | GGCC | 8 cut(s) | 739, 1305, 1557, 2320, 3367, 4256, 4912, 5128 |
| ApaLI | GTGCAC | 2 cut(s) | 1615, 2042 |
| ApeKI | GCWGC | 7 cut(s) | 749, 960, 963, 2325, 3601, 3770, 3928 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2802, 2834 |
| AseI | ATTAAT | 1 cut(s) | 1791 |
| AsiGI | ACCGGT | 1 cut(s) | 5133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4886 |
| AspA2I | CCTAGG | 1 cut(s) | 4324 |
| AspLEI | GCGC | 4 cut(s) | 546, 2600, 3027, 3928 |
| AspS9I | GGNCC | 4 cut(s) | 1306, 2617, 4328, 4403 |
| AsuC2I | CCSGG | 2 cut(s) | 3054, 4691 |
| AsuII | TTCGAA | 1 cut(s) | 4460 |
| AvaI | CYCGRG | 2 cut(s) | 272, 2610 |
| AvaII | GGWCC | 3 cut(s) | 2617, 4328, 4403 |
| AvrII | CCTAGG | 1 cut(s) | 4324 |
| AxyI | CCTNAGG | 1 cut(s) | 4332 |
| BaeGI | GKGCMC | 3 cut(s) | 221, 1619, 2046 |
| BalI | TGGCCA | 2 cut(s) | 3369, 5130 |
| BamHI | GGATCC | 2 cut(s) | 1711, 4577 |
| BanI | GGYRCC | 1 cut(s) | 3514 |
| BanII | GRGCYC | 4 cut(s) | 3549, 3558, 3693, 4727 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2344, 2376 |
| BauI | CACGAG | 2 cut(s) | 1976, 3908 |
| BbsI | GAAGAC | 1 cut(s) | 2280 |
| Bbv12I | GWGCWC | 9 cut(s) | 19, 773, 1343, 1471, 1619, 2046, 3558, 3693, 4863 |
| BbvCI | CCTCAGC | 1 cut(s) | 562 |
| BbvI | GCAGC | 7 cut(s) | 736, 972, 975, 2337, 3613, 3782, 3915 |
| BceAI | ACGGC | 2 cut(s) | 1661, 3414 |
| BciT130I | CCWGG | 5 cut(s) | 888, 1004, 1716, 2349, 3532 |
| BciVI | GTATCC | 2 cut(s) | 2124, 2225 |
| BclI | TGATCA | 5 cut(s) | 634, 1513, 2667, 2884, 4123 |
| BcnI | CCSGG | 2 cut(s) | 3054, 4691 |
| BcoDI | GTCTC | 7 cut(s) | 422, 1621, 1658, 1675, 2294, 2479, 3935 |
| BfmI | CTRYAG | 3 cut(s) | 1941, 2364, 2830 |
| BfoI | RGCGCY | 2 cut(s) | 547, 2601 |
| BfrI | CTTAAG | 1 cut(s) | 1706 |
| BfuAI | ACCTGC | 3 cut(s) | 3365, 3378, 4235 |
| BfuI | GTATCC | 2 cut(s) | 2124, 2225 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 313 |
| BisI | GCNGC | 8 cut(s) | 750, 961, 964, 2323, 2326, 3602, 3771, 3929 |
| BlnI | CCTAGG | 1 cut(s) | 4324 |
| BlpI | GCTNAGC | 1 cut(s) | 2601 |
| BlsI | GCNGC | 8 cut(s) | 751, 962, 965, 2324, 2327, 3603, 3772, 3930 |
| BmcAI | AGTACT | 1 cut(s) | 362 |
| Bme1390I | CCNGG | 7 cut(s) | 888, 1004, 1716, 2349, 3054, 3532, 4691 |
| Bme18I | GGWCC | 3 cut(s) | 2617, 4328, 4403 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 435 |
| BmeT110I | CYCGRG | 2 cut(s) | 272, 2610 |
| BmgT120I | GGNCC | 4 cut(s) | 1306, 2617, 4328, 4403 |
| BmiI | GGNNCC | 5 cut(s) | 1008, 1713, 3516, 4404, 4579 |
| BmrFI | CCNGG | 7 cut(s) | 888, 1004, 1716, 2349, 3054, 3532, 4691 |
| BpiI | GAAGAC | 1 cut(s) | 2280 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1655, 1687, 3341, 3373 |
| BpmI | CTGGAG | 3 cut(s) | 588, 2772, 5127 |
| Bpu10I | CCTNAGC | 1 cut(s) | 562 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2601 |
| Bpu14I | TTCGAA | 1 cut(s) | 4460 |
| BpuMI | CCSGG | 2 cut(s) | 3054, 4691 |
| Bsa29I | ATCGAT | 2 cut(s) | 705, 1787 |
| BsaBI | GATNNNNATC | 1 cut(s) | 829 |
| BsaHI | GRCGYC | 2 cut(s) | 2005, 2626 |
| BsaI | GGTCTC | 1 cut(s) | 1675 |
| BsaWI | WCCGGW | 4 cut(s) | 404, 3949, 4846, 5133 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1438, 1468, 2745, 2775 |
| Bse118I | RCCGGY | 1 cut(s) | 5133 |
| Bse1I | ACTGG | 3 cut(s) | 980, 1156, 5110 |
| Bse21I | CCTNAGG | 1 cut(s) | 4332 |
| Bse3DI | GCAATG | 4 cut(s) | 1388, 2163, 2738, 3052 |
| Bse8I | GATNNNNATC | 1 cut(s) | 829 |
| BseAI | TCCGGA | 1 cut(s) | 3949 |
| BseBI | CCWGG | 5 cut(s) | 888, 1004, 1716, 2349, 3532 |
| BseCI | ATCGAT | 2 cut(s) | 705, 1787 |
| BseJI | GATNNNNATC | 1 cut(s) | 829 |
| BseMI | GCAATG | 4 cut(s) | 1388, 2163, 2738, 3052 |
| BseMII | CTCAG | 4 cut(s) | 576, 1185, 2115, 4146 |
| BseNI | ACTGG | 3 cut(s) | 980, 1156, 5110 |
| BseRI | GAGGAG | 1 cut(s) | 1301 |
| BseSI | GKGCMC | 3 cut(s) | 221, 1619, 2046 |
| BseXI | GCAGC | 7 cut(s) | 736, 972, 975, 2337, 3613, 3782, 3915 |
| BsgI | GTGCAG | 2 cut(s) | 66, 636 |
| BshFI | GGCC | 8 cut(s) | 741, 1307, 1559, 2322, 3369, 4258, 4914, 5130 |
| BshNI | GGYRCC | 1 cut(s) | 3514 |
| BshTI | ACCGGT | 1 cut(s) | 5133 |
| BshVI | ATCGAT | 2 cut(s) | 705, 1787 |
| BsiHKAI | GWGCWC | 9 cut(s) | 19, 773, 1343, 1471, 1619, 2046, 3558, 3693, 4863 |
| BsiHKCI | CYCGRG | 2 cut(s) | 272, 2610 |
| BsiSI | CCGG | 6 cut(s) | 405, 3053, 3950, 4690, 4847, 5134 |
| BslFI | GGGAC | 8 cut(s) | 423, 1128, 1208, 2297, 2985, 4130, 4416, 4816 |
| BsmAI | GTCTC | 7 cut(s) | 422, 1621, 1658, 1675, 2294, 2479, 3935 |
| BsmBI | CGTCTC | 2 cut(s) | 1658, 2479 |
| BsmFI | GGGAC | 8 cut(s) | 423, 1128, 1208, 2297, 2985, 4130, 4416, 4816 |
| BsmI | GAATGC | 5 cut(s) | 937, 1698, 2776, 3476, 4554 |
| BsnI | GGCC | 8 cut(s) | 741, 1307, 1559, 2322, 3369, 4258, 4914, 5130 |
| Bso31I | GGTCTC | 1 cut(s) | 1675 |
| BsoBI | CYCGRG | 2 cut(s) | 272, 2610 |
| Bsp119I | TTCGAA | 1 cut(s) | 4460 |
| Bsp13I | TCCGGA | 1 cut(s) | 3949 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2601 |
| Bsp19I | CCATGG | 2 cut(s) | 1821, 3986 |
| BspANI | GGCC | 8 cut(s) | 741, 1307, 1559, 2322, 3369, 4258, 4914, 5130 |
| BspCNI | CTCAG | 4 cut(s) | 575, 1186, 2116, 4147 |
| BspDI | ATCGAT | 2 cut(s) | 705, 1787 |
| BspEI | TCCGGA | 1 cut(s) | 3949 |
| BspHI | TCATGA | 3 cut(s) | 2013, 2911, 5008 |
| BspLI | GGNNCC | 5 cut(s) | 1008, 1713, 3516, 4404, 4579 |
| BspMI | ACCTGC | 3 cut(s) | 3365, 3378, 4235 |
| BspQI | GCTCTTC | 1 cut(s) | 3968 |
| BspT104I | TTCGAA | 1 cut(s) | 4460 |
| BspT107I | GGYRCC | 1 cut(s) | 3514 |
| BspTI | CTTAAG | 1 cut(s) | 1706 |
| BspTNI | GGTCTC | 1 cut(s) | 1675 |
| BsrBI | CCGCTC | 1 cut(s) | 1200 |
| BsrDI | GCAATG | 4 cut(s) | 1388, 2163, 2738, 3052 |
| BsrFI | RCCGGY | 1 cut(s) | 5133 |
| BsrI | ACTGG | 3 cut(s) | 980, 1156, 5110 |
| BssAI | RCCGGY | 1 cut(s) | 5133 |
| BssNI | GRCGYC | 2 cut(s) | 2005, 2626 |
| BssSI | CACGAG | 2 cut(s) | 1976, 3908 |
| BssT1I | CCWWGG | 5 cut(s) | 753, 1821, 2221, 3986, 4324 |
| Bst2BI | CACGAG | 2 cut(s) | 1976, 3908 |
| Bst2UI | CCWGG | 5 cut(s) | 888, 1004, 1716, 2349, 3532 |
| Bst6I | CTCTTC | 3 cut(s) | 2259, 3912, 3968 |
| BstACI | GRCGYC | 2 cut(s) | 2005, 2626 |
| BstAFI | CTTAAG | 1 cut(s) | 1706 |
| BstBI | TTCGAA | 1 cut(s) | 4460 |
| BstC8I | GCNNGC | 8 cut(s) | 211, 1467, 2046, 2050, 2448, 3029, 3476, 3480 |
| BstDSI | CCRYGG | 4 cut(s) | 1821, 2760, 3986, 5023 |
| BstH2I | RGCGCY | 2 cut(s) | 547, 2601 |
| BstHHI | GCGC | 4 cut(s) | 546, 2600, 3027, 3928 |
| BstMAI | GTCTC | 7 cut(s) | 422, 1621, 1658, 1675, 2294, 2479, 3935 |
| BstNI | CCWGG | 5 cut(s) | 888, 1004, 1716, 2349, 3532 |
| BstNSI | RCATGY | 4 cut(s) | 217, 3000, 3031, 4839 |
| BstSCI | CCNGG | 7 cut(s) | 886, 1002, 1714, 2347, 3052, 3530, 4689 |
| BstSFI | CTRYAG | 3 cut(s) | 1941, 2364, 2830 |
| BstSLI | GKGCMC | 3 cut(s) | 221, 1619, 2046 |
| BstV1I | GCAGC | 7 cut(s) | 736, 972, 975, 2337, 3613, 3782, 3915 |
| BstV2I | GAAGAC | 1 cut(s) | 2280 |
| BstX2I | RGATCY | 7 cut(s) | 169, 1360, 1711, 1825, 4211, 4577, 4980 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 691 |
| BstYI | RGATCY | 7 cut(s) | 169, 1360, 1711, 1825, 4211, 4577, 4980 |
| Bsu15I | ATCGAT | 2 cut(s) | 705, 1787 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4332 |
| BsuI | GTATCC | 2 cut(s) | 2124, 2225 |
| BsuRI | GGCC | 8 cut(s) | 741, 1307, 1559, 2322, 3369, 4258, 4914, 5130 |
| BsuTUI | ATCGAT | 2 cut(s) | 705, 1787 |
| BtgI | CCRYGG | 4 cut(s) | 1821, 2760, 3986, 5023 |
| BtgZI | GCGATG | 1 cut(s) | 4584 |
| BtsIMutI | CAGTG | 3 cut(s) | 653, 1308, 4763 |
| BveI | ACCTGC | 3 cut(s) | 3365, 3378, 4235 |
| Cac8I | GCNNGC | 8 cut(s) | 211, 1467, 2046, 2050, 2448, 3029, 3476, 3480 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4154 |
| CciI | TCATGA | 3 cut(s) | 2013, 2911, 5008 |
| CfoI | GCGC | 4 cut(s) | 546, 2600, 3027, 3928 |
| Cfr10I | RCCGGY | 1 cut(s) | 5133 |
| Cfr13I | GGNCC | 4 cut(s) | 1306, 2617, 4328, 4403 |
| ClaI | ATCGAT | 2 cut(s) | 705, 1787 |
| CseI | GACGC | 2 cut(s) | 1994, 2634 |
| CspAI | ACCGGT | 1 cut(s) | 5133 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 742, 777 |
| DraI | TTTAAA | 3 cut(s) | 2412, 3186, 3216 |
| DriI | GACNNNNNGTC | 1 cut(s) | 435 |
| EaeI | YGGCCR | 2 cut(s) | 3367, 5128 |
| Eam1104I | CTCTTC | 3 cut(s) | 2259, 3912, 3968 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 3 cut(s) | 2259, 3912, 3968 |
| EciI | GGCGGA | 1 cut(s) | 13 |
| Ecl136II | GAGCTC | 2 cut(s) | 3556, 3691 |
| Eco130I | CCWWGG | 5 cut(s) | 753, 1821, 2221, 3986, 4324 |
| Eco147I | AGGCCT | 1 cut(s) | 741 |
| Eco24I | GRGCYC | 4 cut(s) | 3549, 3558, 3693, 4727 |
| Eco31I | GGTCTC | 1 cut(s) | 1675 |
| Eco32I | GATATC | 2 cut(s) | 2545, 4909 |
| Eco47I | GGWCC | 3 cut(s) | 2617, 4328, 4403 |
| Eco53kI | GAGCTC | 2 cut(s) | 3556, 3691 |
| Eco57I | CTGAAG | 4 cut(s) | 164, 206, 266, 4209 |
| Eco81I | CCTNAGG | 1 cut(s) | 4332 |
| Eco88I | CYCGRG | 2 cut(s) | 272, 2610 |
| EcoICRI | GAGCTC | 2 cut(s) | 3556, 3691 |
| EcoO109I | RGGNCCY | 2 cut(s) | 4328, 4403 |
| EcoRI | GAATTC | 2 cut(s) | 1981, 2915 |
| EcoRII | CCWGG | 5 cut(s) | 886, 1002, 1714, 2347, 3530 |
| EcoRV | GATATC | 2 cut(s) | 2545, 4909 |
| EcoT14I | CCWWGG | 5 cut(s) | 753, 1821, 2221, 3986, 4324 |
| EcoT22I | ATGCAT | 4 cut(s) | 937, 1819, 3571, 4978 |
| EcoT38I | GRGCYC | 4 cut(s) | 3549, 3558, 3693, 4727 |
| ErhI | CCWWGG | 5 cut(s) | 753, 1821, 2221, 3986, 4324 |
| Esp3I | CGTCTC | 2 cut(s) | 1658, 2479 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1089, 1121, 1314, 1346, 3678, 3710, 4691, 4723 |
| FaqI | GGGAC | 8 cut(s) | 423, 1128, 1208, 2297, 2985, 4130, 4416, 4816 |
| FauI | CCCGC | 2 cut(s) | 1193, 1372 |
| FbaI | TGATCA | 5 cut(s) | 634, 1513, 2667, 2884, 4123 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 8 cut(s) | 750, 961, 964, 2323, 2326, 3602, 3771, 3929 |
| FriOI | GRGCYC | 4 cut(s) | 3549, 3558, 3693, 4727 |
| Fsp4HI | GCNGC | 8 cut(s) | 750, 961, 964, 2323, 2326, 3602, 3771, 3929 |
| GlaI | GCGC | 4 cut(s) | 545, 2599, 3026, 3927 |
| GluI | GCNGC | 8 cut(s) | 750, 961, 964, 2323, 2326, 3602, 3771, 3929 |
| GsuI | CTGGAG | 3 cut(s) | 588, 2772, 5127 |
| HaeII | RGCGCY | 2 cut(s) | 547, 2601 |
| HaeIII | GGCC | 8 cut(s) | 741, 1307, 1559, 2322, 3369, 4258, 4914, 5130 |
| HapII | CCGG | 6 cut(s) | 405, 3053, 3950, 4690, 4847, 5134 |
| HgaI | GACGC | 2 cut(s) | 1994, 2634 |
| HhaI | GCGC | 4 cut(s) | 546, 2600, 3027, 3928 |
| Hin1I | GRCGYC | 2 cut(s) | 2005, 2626 |
| Hin6I | GCGC | 4 cut(s) | 544, 2598, 3025, 3926 |
| HinP1I | GCGC | 4 cut(s) | 544, 2598, 3025, 3926 |
| HincII | GTYRAC | 3 cut(s) | 1924, 3507, 4310 |
| HindII | GTYRAC | 3 cut(s) | 1924, 3507, 4310 |
| HindIII | AAGCTT | 2 cut(s) | 1703, 5001 |
| HpaI | GTTAAC | 2 cut(s) | 1924, 3507 |
| HpaII | CCGG | 6 cut(s) | 405, 3053, 3950, 4690, 4847, 5134 |
| Hpy99I | CGWCG | 1 cut(s) | 3470 |
| HpyCH4IV | ACGT | 3 cut(s) | 3067, 3882, 4626 |
| HpySE526I | ACGT | 3 cut(s) | 3067, 3882, 4626 |
| Hsp92I | GRCGYC | 2 cut(s) | 2005, 2626 |
| HspAI | GCGC | 4 cut(s) | 544, 2598, 3025, 3926 |
| Kpn2I | TCCGGA | 1 cut(s) | 3949 |
| Ksp22I | TGATCA | 5 cut(s) | 634, 1513, 2667, 2884, 4123 |
| KspAI | GTTAAC | 2 cut(s) | 1924, 3507 |
| LguI | GCTCTTC | 1 cut(s) | 3968 |
| Lsp1109I | GCAGC | 7 cut(s) | 736, 972, 975, 2337, 3613, 3782, 3915 |
| MaeII | ACGT | 3 cut(s) | 3067, 3882, 4626 |
| MbiI | CCGCTC | 1 cut(s) | 1200 |
| MfeI | CAATTG | 3 cut(s) | 548, 3662, 4931 |
| MflI | RGATCY | 7 cut(s) | 169, 1360, 1711, 1825, 4211, 4577, 4980 |
| MlsI | TGGCCA | 2 cut(s) | 3369, 5130 |
| MluNI | TGGCCA | 2 cut(s) | 3369, 5130 |
| MlyI | GAGTC | 5 cut(s) | 2296, 3640, 3807, 3900, 4753 |
| MmeI | TCCRAC | 8 cut(s) | 534, 672, 896, 2250, 2356, 3565, 3597, 5023 |
| Mox20I | TGGCCA | 2 cut(s) | 3369, 5130 |
| Mph1103I | ATGCAT | 4 cut(s) | 937, 1819, 3571, 4978 |
| MroI | TCCGGA | 1 cut(s) | 3949 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4886 |
| MscI | TGGCCA | 2 cut(s) | 3369, 5130 |
| MslI | CAYNNNNRTG | 4 cut(s) | 386, 1961, 2995, 3341 |
| Msp20I | TGGCCA | 2 cut(s) | 3369, 5130 |
| MspA1I | CMGCKG | 1 cut(s) | 566 |
| MspCI | CTTAAG | 1 cut(s) | 1706 |
| MspI | CCGG | 6 cut(s) | 405, 3053, 3950, 4690, 4847, 5134 |
| MspR9I | CCNGG | 7 cut(s) | 888, 1004, 1716, 2349, 3054, 3532, 4691 |
| MunI | CAATTG | 3 cut(s) | 548, 3662, 4931 |
| Mva1269I | GAATGC | 5 cut(s) | 937, 1698, 2776, 3476, 4554 |
| MvaI | CCWGG | 5 cut(s) | 888, 1004, 1716, 2349, 3532 |
| NciI | CCSGG | 2 cut(s) | 3054, 4691 |
| NcoI | CCATGG | 2 cut(s) | 1821, 3986 |
| NlaIV | GGNNCC | 5 cut(s) | 1008, 1713, 3516, 4404, 4579 |
| NmuCI | GTSAC | 5 cut(s) | 1415, 2755, 3875, 4015, 4838 |
| NsiI | ATGCAT | 4 cut(s) | 937, 1819, 3571, 4978 |
| NspI | RCATGY | 4 cut(s) | 217, 3000, 3031, 4839 |
| NspV | TTCGAA | 1 cut(s) | 4460 |
| OliI | CACNNNNGTG | 1 cut(s) | 3341 |
| PaeI | GCATGC | 1 cut(s) | 3031 |
| PaeR7I | CTCGAG | 2 cut(s) | 272, 2610 |
| PagI | TCATGA | 3 cut(s) | 2013, 2911, 5008 |
| PasI | CCCWGGG | 1 cut(s) | 3531 |
| PceI | AGGCCT | 1 cut(s) | 741 |
| PciI | ACATGT | 1 cut(s) | 2996 |
| PciSI | GCTCTTC | 1 cut(s) | 3968 |
| PctI | GAATGC | 5 cut(s) | 937, 1698, 2776, 3476, 4554 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4886 |
| PflFI | GACNNNGTC | 1 cut(s) | 1850 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 53, 485, 553, 3238 |
| PfoI | TCCNGGA | 1 cut(s) | 886 |
| PinAI | ACCGGT | 1 cut(s) | 5133 |
| PkrI | GCNGC | 8 cut(s) | 751, 962, 965, 2324, 2327, 3603, 3772, 3930 |
| PleI | GAGTC | 5 cut(s) | 2296, 3640, 3807, 3900, 4752 |
| PpsI | GAGTC | 5 cut(s) | 2296, 3640, 3807, 3900, 4752 |
| PpuMI | RGGWCCY | 2 cut(s) | 4328, 4403 |
| PscI | ACATGT | 1 cut(s) | 2996 |
| PshBI | ATTAAT | 1 cut(s) | 1791 |
| Psp124BI | GAGCTC | 2 cut(s) | 3558, 3693 |
| Psp1406I | AACGTT | 2 cut(s) | 3067, 4626 |
| Psp5II | RGGWCCY | 2 cut(s) | 4328, 4403 |
| Psp6I | CCWGG | 5 cut(s) | 886, 1002, 1714, 2347, 3530 |
| PspGI | CCWGG | 5 cut(s) | 886, 1002, 1714, 2347, 3530 |
| PspN4I | GGNNCC | 5 cut(s) | 1008, 1713, 3516, 4404, 4579 |
| PspPI | GGNCC | 4 cut(s) | 1306, 2617, 4328, 4403 |
| PspPPI | RGGWCCY | 2 cut(s) | 4328, 4403 |
| PspXI | VCTCGAGB | 1 cut(s) | 272 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4154 |
| PsuI | RGATCY | 7 cut(s) | 169, 1360, 1711, 1825, 4211, 4577, 4980 |
| PsyI | GACNNNGTC | 1 cut(s) | 1850 |
| PvuII | CAGCTG | 1 cut(s) | 566 |
| RseI | CAYNNNNRTG | 4 cut(s) | 386, 1961, 2995, 3341 |
| SacI | GAGCTC | 2 cut(s) | 3558, 3693 |
| SapI | GCTCTTC | 1 cut(s) | 3968 |
| SatI | GCNGC | 8 cut(s) | 750, 961, 964, 2323, 2326, 3602, 3771, 3929 |
| Sau96I | GGNCC | 4 cut(s) | 1306, 2617, 4328, 4403 |
| ScaI | AGTACT | 1 cut(s) | 362 |
| SchI | GAGTC | 5 cut(s) | 2296, 3640, 3807, 3900, 4753 |
| ScrFI | CCNGG | 7 cut(s) | 888, 1004, 1716, 2349, 3054, 3532, 4691 |
| SfcI | CTRYAG | 3 cut(s) | 1941, 2364, 2830 |
| Sfr274I | CTCGAG | 2 cut(s) | 272, 2610 |
| SfuI | TTCGAA | 1 cut(s) | 4460 |
| SinI | GGWCC | 3 cut(s) | 2617, 4328, 4403 |
| SlaI | CTCGAG | 2 cut(s) | 272, 2610 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 386, 1961, 2995, 3341 |
| SphI | GCATGC | 1 cut(s) | 3031 |
| SseBI | AGGCCT | 1 cut(s) | 741 |
| SspI | AATATT | 3 cut(s) | 515, 955, 5115 |
| SstI | GAGCTC | 2 cut(s) | 3558, 3693 |
| StuI | AGGCCT | 1 cut(s) | 741 |
| StyD4I | CCNGG | 7 cut(s) | 886, 1002, 1714, 2347, 3052, 3530, 4689 |
| StyI | CCWWGG | 5 cut(s) | 753, 1821, 2221, 3986, 4324 |
| TaiI | ACGT | 3 cut(s) | 3070, 3885, 4629 |
| TaqI | TCGA | 9 cut(s) | 111, 273, 300, 321, 667, 705, 1787, 2611, 4460 |
| TatI | WGTACW | 3 cut(s) | 360, 2208, 4620 |
| TauI | GCSGC | 1 cut(s) | 2325 |
| TscAI | CASTG | 3 cut(s) | 660, 1308, 4770 |
| TseFI | GTSAC | 5 cut(s) | 1415, 2755, 3875, 4015, 4838 |
| TseI | GCWGC | 7 cut(s) | 749, 960, 963, 2325, 3601, 3770, 3928 |
| Tsp45I | GTSAC | 5 cut(s) | 1415, 2755, 3875, 4015, 4838 |
| TspGWI | ACGGA | 2 cut(s) | 941, 5012 |
| TspRI | CASTG | 3 cut(s) | 660, 1308, 4770 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1850 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 53, 485, 553, 3238 |
| Vha464I | CTTAAG | 1 cut(s) | 1706 |
| VneI | GTGCAC | 2 cut(s) | 1615, 2042 |
| VpaK11BI | GGWCC | 3 cut(s) | 2617, 4328, 4403 |
| VspI | ATTAAT | 1 cut(s) | 1791 |
| XbaI | TCTAGA | 1 cut(s) | 5069 |
| XceI | RCATGY | 4 cut(s) | 217, 3000, 3031, 4839 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1739 |
| XhoI | CTCGAG | 2 cut(s) | 272, 2610 |
| XmaJI | CCTAGG | 1 cut(s) | 4324 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4886 |
| ZrmI | AGTACT | 1 cut(s) | 362 |
| Zsp2I | ATGCAT | 4 cut(s) | 937, 1819, 3571, 4978 |