transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 170 - 262 | 1e-16 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 307 |
| AccBSI | CCGCTC | 1 cut(s) | 485 |
| AciI | CCGC | 2 cut(s) | 95, 485 |
| AclWI | GGATC | 6 cut(s) | 221, 419, 432, 540, 835, 910 |
| AcoI | YGGCCR | 1 cut(s) | 564 |
| AfaI | GTAC | 3 cut(s) | 65, 617, 733 |
| AgsI | TTSAA | 4 cut(s) | 46, 248, 767, 912 |
| AluBI | AGCT | 4 cut(s) | 338, 539, 821, 881 |
| AluI | AGCT | 4 cut(s) | 338, 539, 821, 881 |
| Alw26I | GTCTC | 1 cut(s) | 923 |
| AlwI | GGATC | 6 cut(s) | 221, 419, 432, 540, 835, 910 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 341 |
| AoxI | GGCC | 3 cut(s) | 314, 564, 714 |
| ApeKI | GCWGC | 3 cut(s) | 338, 341, 818 |
| AsuHPI | GGTGA | 5 cut(s) | 117, 129, 141, 319, 646 |
| AsuNHI | GCTAGC | 1 cut(s) | 857 |
| BaeGI | GKGCMC | 1 cut(s) | 310 |
| BamHI | GGATCC | 1 cut(s) | 424 |
| BanI | GGYRCC | 1 cut(s) | 307 |
| BauI | CACGAG | 1 cut(s) | 194 |
| BbvI | GCAGC | 3 cut(s) | 325, 328, 830 |
| BccI | CCATC | 4 cut(s) | 88, 540, 631, 829 |
| BciVI | GTATCC | 2 cut(s) | 738, 947 |
| BcoDI | GTCTC | 1 cut(s) | 923 |
| BfaI | CTAG | 4 cut(s) | 477, 540, 858, 915 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfuI | GTATCC | 2 cut(s) | 738, 947 |
| BisI | GCNGC | 3 cut(s) | 339, 342, 819 |
| BlsI | GCNGC | 3 cut(s) | 340, 343, 820 |
| BmcAI | AGTACT | 1 cut(s) | 617 |
| BmiI | GGNNCC | 4 cut(s) | 78, 309, 426, 561 |
| BmsI | GCATC | 2 cut(s) | 249, 844 |
| BmtI | GCTAGC | 1 cut(s) | 861 |
| BpmI | CTGGAG | 1 cut(s) | 843 |
| BpuEI | CTTGAG | 2 cut(s) | 92, 548 |
| Bsa29I | ATCGAT | 1 cut(s) | 662 |
| BsaAI | YACGTR | 2 cut(s) | 18, 749 |
| BsaJI | CCNNGG | 2 cut(s) | 311, 940 |
| Bse118I | RCCGGY | 1 cut(s) | 566 |
| Bse1I | ACTGG | 1 cut(s) | 6 |
| BseCI | ATCGAT | 1 cut(s) | 662 |
| BseDI | CCNNGG | 2 cut(s) | 311, 940 |
| BseGI | GGATG | 4 cut(s) | 91, 264, 551, 859 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 6 |
| BseRI | GAGGAG | 1 cut(s) | 495 |
| BseSI | GKGCMC | 1 cut(s) | 310 |
| BseX3I | CGGCCG | 1 cut(s) | 564 |
| BseXI | GCAGC | 3 cut(s) | 325, 328, 830 |
| Bsh1285I | CGRYCG | 2 cut(s) | 567, 571 |
| BshFI | GGCC | 3 cut(s) | 316, 566, 716 |
| BshNI | GGYRCC | 1 cut(s) | 307 |
| BshVI | ATCGAT | 1 cut(s) | 662 |
| BsiEI | CGRYCG | 2 cut(s) | 567, 571 |
| BsiSI | CCGG | 2 cut(s) | 563, 567 |
| BsmAI | GTCTC | 1 cut(s) | 923 |
| BsmBI | CGTCTC | 1 cut(s) | 923 |
| BsnI | GGCC | 3 cut(s) | 316, 566, 716 |
| Bsp1286I | GDGCHC | 1 cut(s) | 310 |
| Bsp1407I | TGTACA | 1 cut(s) | 731 |
| Bsp143I | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| BspACI | CCGC | 2 cut(s) | 95, 485 |
| BspANI | GGCC | 3 cut(s) | 316, 566, 716 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspDI | ATCGAT | 1 cut(s) | 662 |
| BspLI | GGNNCC | 4 cut(s) | 78, 309, 426, 561 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspOI | GCTAGC | 1 cut(s) | 861 |
| BspPI | GGATC | 6 cut(s) | 221, 419, 432, 540, 835, 910 |
| BspQI | GCTCTTC | 1 cut(s) | 836 |
| BspT107I | GGYRCC | 1 cut(s) | 307 |
| BsrBI | CCGCTC | 1 cut(s) | 485 |
| BsrFI | RCCGGY | 1 cut(s) | 566 |
| BsrGI | TGTACA | 1 cut(s) | 731 |
| BsrI | ACTGG | 1 cut(s) | 6 |
| BssAI | RCCGGY | 1 cut(s) | 566 |
| BssECI | CCNNGG | 2 cut(s) | 311, 940 |
| BssMI | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| BssSI | CACGAG | 1 cut(s) | 194 |
| BssT1I | CCWWGG | 2 cut(s) | 311, 940 |
| Bst2BI | CACGAG | 1 cut(s) | 194 |
| Bst4CI | ACNGT | 1 cut(s) | 559 |
| Bst6I | CTCTTC | 3 cut(s) | 54, 270, 836 |
| BstAUI | TGTACA | 1 cut(s) | 731 |
| BstBAI | YACGTR | 2 cut(s) | 18, 749 |
| BstC8I | GCNNGC | 1 cut(s) | 859 |
| BstDEI | CTNAG | 4 cut(s) | 204, 269, 413, 718 |
| BstF5I | GGATG | 4 cut(s) | 91, 264, 551, 859 |
| BstKTI | GATC | 7 cut(s) | 70, 229, 427, 535, 666, 830, 905 |
| BstMAI | GTCTC | 1 cut(s) | 923 |
| BstMBI | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| BstMCI | CGRYCG | 2 cut(s) | 567, 571 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 722 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstSLI | GKGCMC | 1 cut(s) | 310 |
| BstV1I | GCAGC | 3 cut(s) | 325, 328, 830 |
| BstX2I | RGATCY | 2 cut(s) | 424, 827 |
| BstYI | RGATCY | 2 cut(s) | 424, 827 |
| BstZI | CGGCCG | 1 cut(s) | 564 |
| Bsu15I | ATCGAT | 1 cut(s) | 662 |
| BsuI | GTATCC | 2 cut(s) | 738, 947 |
| BsuRI | GGCC | 3 cut(s) | 316, 566, 716 |
| BsuTUI | ATCGAT | 1 cut(s) | 662 |
| BtsCI | GGATG | 4 cut(s) | 91, 264, 551, 859 |
| Cac8I | GCNNGC | 1 cut(s) | 859 |
| CaiI | CAGNNNCTG | 1 cut(s) | 341 |
| Cfr10I | RCCGGY | 1 cut(s) | 566 |
| ClaI | ATCGAT | 1 cut(s) | 662 |
| CseI | GACGC | 1 cut(s) | 646 |
| Csp6I | GTAC | 3 cut(s) | 64, 616, 732 |
| CviAII | CATG | 4 cut(s) | 407, 582, 729, 740 |
| CviQI | GTAC | 3 cut(s) | 64, 616, 732 |
| DdeI | CTNAG | 4 cut(s) | 204, 269, 413, 718 |
| DpnI | GATC | 7 cut(s) | 69, 228, 426, 534, 665, 829, 904 |
| DpnII | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| EaeI | YGGCCR | 1 cut(s) | 564 |
| EagI | CGGCCG | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 3 cut(s) | 54, 270, 836 |
| EarI | CTCTTC | 3 cut(s) | 54, 270, 836 |
| EclXI | CGGCCG | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 2 cut(s) | 311, 940 |
| Eco147I | AGGCCT | 1 cut(s) | 716 |
| Eco52I | CGGCCG | 1 cut(s) | 564 |
| EcoT14I | CCWWGG | 2 cut(s) | 311, 940 |
| ErhI | CCWWGG | 2 cut(s) | 311, 940 |
| Esp3I | CGTCTC | 1 cut(s) | 923 |
| FaeI | CATG | 4 cut(s) | 410, 585, 732, 743 |
| FaiI | YATR | 9 cut(s) | 220, 408, 470, 583, 702, 711, 730, 741, 777 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FatI | CATG | 4 cut(s) | 406, 581, 728, 739 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 342, 819 |
| FokI | GGATG | 4 cut(s) | 78, 271, 558, 866 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 342, 819 |
| FspBI | CTAG | 4 cut(s) | 477, 540, 858, 915 |
| GluI | GCNGC | 3 cut(s) | 339, 342, 819 |
| GsuI | CTGGAG | 1 cut(s) | 843 |
| HaeIII | GGCC | 3 cut(s) | 316, 566, 716 |
| HapII | CCGG | 2 cut(s) | 563, 567 |
| HgaI | GACGC | 1 cut(s) | 646 |
| Hin1II | CATG | 4 cut(s) | 410, 585, 732, 743 |
| HinfI | GANTC | 4 cut(s) | 176, 199, 812, 947 |
| HpaII | CCGG | 2 cut(s) | 563, 567 |
| HphI | GGTGA | 5 cut(s) | 117, 129, 141, 319, 646 |
| Hpy166II | GTNNAC | 4 cut(s) | 21, 125, 149, 193 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 429 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 194, 203, 248 |
| Hpy8I | GTNNAC | 4 cut(s) | 21, 125, 149, 193 |
| Hpy99I | CGWCG | 1 cut(s) | 631 |
| HpyAV | CCTTC | 5 cut(s) | 162, 273, 502, 643, 773 |
| HpyCH4III | ACNGT | 1 cut(s) | 559 |
| HpyCH4IV | ACGT | 2 cut(s) | 17, 748 |
| HpyCH4V | TGCA | 2 cut(s) | 212, 344 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 722 |
| HpyF3I | CTNAG | 4 cut(s) | 204, 269, 413, 718 |
| HpySE526I | ACGT | 2 cut(s) | 17, 748 |
| Hsp92II | CATG | 4 cut(s) | 410, 585, 732, 743 |
| Kzo9I | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| LguI | GCTCTTC | 1 cut(s) | 836 |
| LmnI | GCTCC | 1 cut(s) | 482 |
| LpnPI | CCDG | 6 cut(s) | 19, 216, 348, 576, 580, 807 |
| Lsp1109I | GCAGC | 3 cut(s) | 325, 328, 830 |
| LweI | GCATC | 2 cut(s) | 249, 844 |
| MaeI | CTAG | 4 cut(s) | 477, 540, 858, 915 |
| MaeII | ACGT | 2 cut(s) | 17, 748 |
| MaeIII | GTNAC | 1 cut(s) | 634 |
| MalI | GATC | 7 cut(s) | 69, 228, 426, 534, 665, 829, 904 |
| MbiI | CCGCTC | 1 cut(s) | 485 |
| MboI | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| MboII | GAAGA | 9 cut(s) | 71, 126, 159, 171, 287, 376, 514, 853, 900 |
| MfeI | CAATTG | 1 cut(s) | 392 |
| MflI | RGATCY | 2 cut(s) | 424, 827 |
| MhlI | GDGCHC | 1 cut(s) | 310 |
| MluCI | AATT | 7 cut(s) | 104, 159, 243, 392, 446, 803, 896 |
| MlyI | GAGTC | 1 cut(s) | 956 |
| MmeI | TCCRAC | 2 cut(s) | 34, 849 |
| MseI | TTAA | 2 cut(s) | 158, 924 |
| MspA1I | CMGCKG | 2 cut(s) | 338, 821 |
| MspI | CCGG | 2 cut(s) | 563, 567 |
| MunI | CAATTG | 1 cut(s) | 392 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 722 |
| NdeII | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| NheI | GCTAGC | 1 cut(s) | 857 |
| NlaIII | CATG | 4 cut(s) | 410, 585, 732, 743 |
| NlaIV | GGNNCC | 4 cut(s) | 78, 309, 426, 561 |
| NmeAIII | GCCGAG | 1 cut(s) | 872 |
| NmuCI | GTSAC | 1 cut(s) | 634 |
| PceI | AGGCCT | 1 cut(s) | 716 |
| PciSI | GCTCTTC | 1 cut(s) | 836 |
| PfeI | GAWTC | 3 cut(s) | 176, 199, 812 |
| PflFI | GACNNNGTC | 1 cut(s) | 786 |
| PkrI | GCNGC | 3 cut(s) | 340, 343, 820 |
| PleI | GAGTC | 1 cut(s) | 955 |
| PpsI | GAGTC | 1 cut(s) | 955 |
| Ppu21I | YACGTR | 2 cut(s) | 18, 749 |
| PspN4I | GGNNCC | 4 cut(s) | 78, 309, 426, 561 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PstNI | CAGNNNCTG | 1 cut(s) | 341 |
| PsuI | RGATCY | 2 cut(s) | 424, 827 |
| PsyI | GACNNNGTC | 1 cut(s) | 786 |
| PvuII | CAGCTG | 2 cut(s) | 338, 821 |
| RsaI | GTAC | 3 cut(s) | 65, 617, 733 |
| RsaNI | GTAC | 3 cut(s) | 64, 616, 732 |
| SapI | GCTCTTC | 1 cut(s) | 836 |
| SaqAI | TTAA | 2 cut(s) | 158, 924 |
| SatI | GCNGC | 3 cut(s) | 339, 342, 819 |
| Sau3AI | GATC | 7 cut(s) | 67, 226, 424, 532, 663, 827, 902 |
| ScaI | AGTACT | 1 cut(s) | 617 |
| SchI | GAGTC | 1 cut(s) | 956 |
| SduI | GDGCHC | 1 cut(s) | 310 |
| SfaNI | GCATC | 2 cut(s) | 249, 844 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 2 cut(s) | 71, 527 |
| SmoI | CTYRAG | 2 cut(s) | 71, 527 |
| Sse9I | AATT | 7 cut(s) | 104, 159, 243, 392, 446, 803, 896 |
| SseBI | AGGCCT | 1 cut(s) | 716 |
| SsiI | CCGC | 2 cut(s) | 95, 485 |
| SspMI | CTAG | 4 cut(s) | 477, 540, 858, 915 |
| StuI | AGGCCT | 1 cut(s) | 716 |
| StyI | CCWWGG | 2 cut(s) | 311, 940 |
| TaaI | ACNGT | 1 cut(s) | 559 |
| TaiI | ACGT | 2 cut(s) | 20, 751 |
| TaqI | TCGA | 3 cut(s) | 535, 629, 662 |
| TasI | AATT | 7 cut(s) | 104, 159, 243, 392, 446, 803, 896 |
| TatI | WGTACW | 2 cut(s) | 615, 731 |
| TfiI | GAWTC | 3 cut(s) | 176, 199, 812 |
| Tru1I | TTAA | 2 cut(s) | 158, 924 |
| Tru9I | TTAA | 2 cut(s) | 158, 924 |
| TseFI | GTSAC | 1 cut(s) | 634 |
| TseI | GCWGC | 3 cut(s) | 338, 341, 818 |
| Tsp45I | GTSAC | 1 cut(s) | 634 |
| TspDTI | ATGAA | 6 cut(s) | 102, 395, 521, 717, 717, 792 |
| Tth111I | GACNNNGTC | 1 cut(s) | 786 |
| XspI | CTAG | 4 cut(s) | 477, 540, 858, 915 |
| ZrmI | AGTACT | 1 cut(s) | 617 |