No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SHS2_Rpb7-N | PF03876 | 15 - 68 | 8.1e-06 | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 315 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcsI | RAATTY | 1 cut(s) | 479 |
| AcuI | CTGAAG | 1 cut(s) | 311 |
| AdeI | CACNNNGTG | 1 cut(s) | 286 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 100 |
| AgsI | TTSAA | 2 cut(s) | 397, 419 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 406 |
| AjnI | CCWGG | 1 cut(s) | 373 |
| AleI | CACNNNNGTG | 1 cut(s) | 161 |
| AluBI | AGCT | 3 cut(s) | 51, 247, 455 |
| AluI | AGCT | 3 cut(s) | 51, 247, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 282 |
| Alw44I | GTGCAC | 1 cut(s) | 278 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApaLI | GTGCAC | 1 cut(s) | 278 |
| ApeKI | GCWGC | 4 cut(s) | 41, 97, 193, 433 |
| ApoI | RAATTY | 1 cut(s) | 479 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AspS9I | GGNCC | 2 cut(s) | 317, 518 |
| AsuHPI | GGTGA | 1 cut(s) | 214 |
| AsuII | TTCGAA | 1 cut(s) | 347 |
| AvaII | GGWCC | 2 cut(s) | 317, 518 |
| BaeGI | GKGCMC | 1 cut(s) | 282 |
| Bbv12I | GWGCWC | 1 cut(s) | 282 |
| BbvI | GCAGC | 4 cut(s) | 28, 84, 205, 420 |
| BccI | CCATC | 1 cut(s) | 242 |
| BciT130I | CCWGG | 1 cut(s) | 375 |
| BciVI | GTATCC | 1 cut(s) | 134 |
| BfaI | CTAG | 1 cut(s) | 515 |
| BfoI | RGCGCY | 1 cut(s) | 234 |
| BfuI | GTATCC | 1 cut(s) | 134 |
| BglII | AGATCT | 1 cut(s) | 261 |
| BisI | GCNGC | 4 cut(s) | 42, 98, 194, 434 |
| BlsI | GCNGC | 4 cut(s) | 43, 99, 195, 435 |
| Bme1390I | CCNGG | 1 cut(s) | 375 |
| Bme18I | GGWCC | 2 cut(s) | 317, 518 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 406 |
| BmgT120I | GGNCC | 2 cut(s) | 317, 518 |
| BmiI | GGNNCC | 1 cut(s) | 319 |
| BmrFI | CCNGG | 1 cut(s) | 375 |
| BmrI | ACTGGG | 1 cut(s) | 210 |
| BmsI | GCATC | 3 cut(s) | 46, 60, 302 |
| BmuI | ACTGGG | 1 cut(s) | 210 |
| Bpu14I | TTCGAA | 1 cut(s) | 347 |
| BpuEI | CTTGAG | 1 cut(s) | 485 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 100 |
| Bse1I | ACTGG | 3 cut(s) | 205, 218, 521 |
| BseBI | CCWGG | 1 cut(s) | 375 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 3 cut(s) | 61, 109, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 6 |
| BseNI | ACTGG | 3 cut(s) | 205, 218, 521 |
| BseRI | GAGGAG | 1 cut(s) | 270 |
| BseSI | GKGCMC | 1 cut(s) | 282 |
| BseXI | GCAGC | 4 cut(s) | 28, 84, 205, 420 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 282 |
| BsiSI | CCGG | 1 cut(s) | 94 |
| BslFI | GGGAC | 1 cut(s) | 303 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BsmFI | GGGAC | 1 cut(s) | 303 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bsp119I | TTCGAA | 1 cut(s) | 347 |
| Bsp1286I | GDGCHC | 1 cut(s) | 282 |
| Bsp143I | GATC | 2 cut(s) | 133, 261 |
| BspACI | CCGC | 1 cut(s) | 315 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 7 |
| BspLI | GGNNCC | 1 cut(s) | 319 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspT104I | TTCGAA | 1 cut(s) | 347 |
| BsrI | ACTGG | 3 cut(s) | 205, 218, 521 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 2 cut(s) | 133, 261 |
| Bst2UI | CCWGG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 1 cut(s) | 163 |
| Bst6I | CTCTTC | 1 cut(s) | 346 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 286 |
| BstBI | TTCGAA | 1 cut(s) | 347 |
| BstDEI | CTNAG | 6 cut(s) | 15, 114, 265, 411, 456, 528 |
| BstF5I | GGATG | 3 cut(s) | 61, 109, 211 |
| BstH2I | RGCGCY | 1 cut(s) | 234 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 2 cut(s) | 136, 264 |
| BstMBI | GATC | 2 cut(s) | 133, 261 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 286 |
| BstNI | CCWGG | 1 cut(s) | 375 |
| BstNSI | RCATGY | 1 cut(s) | 506 |
| BstSCI | CCNGG | 1 cut(s) | 373 |
| BstSLI | GKGCMC | 1 cut(s) | 282 |
| BstV1I | GCAGC | 4 cut(s) | 28, 84, 205, 420 |
| BstX2I | RGATCY | 2 cut(s) | 133, 261 |
| BstYI | RGATCY | 2 cut(s) | 133, 261 |
| BsuI | GTATCC | 1 cut(s) | 134 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BtsCI | GGATG | 3 cut(s) | 61, 109, 211 |
| BtsI | GCAGTG | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 1 cut(s) | 29 |
| CfoI | GCGC | 1 cut(s) | 233 |
| Cfr13I | GGNCC | 2 cut(s) | 317, 518 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviJI | RGCY | 7 cut(s) | 51, 97, 125, 247, 455, 463, 498 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 97, 125, 247, 455, 463, 498 |
| DdeI | CTNAG | 6 cut(s) | 15, 114, 265, 411, 456, 528 |
| DpnI | GATC | 2 cut(s) | 135, 263 |
| DpnII | GATC | 2 cut(s) | 133, 261 |
| DraIII | CACNNNGTG | 1 cut(s) | 286 |
| DriI | GACNNNNNGTC | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 1 cut(s) | 346 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 406 |
| EarI | CTCTTC | 1 cut(s) | 346 |
| Eco47I | GGWCC | 2 cut(s) | 317, 518 |
| Eco57I | CTGAAG | 1 cut(s) | 311 |
| EcoRII | CCWGG | 1 cut(s) | 373 |
| FaeI | CATG | 1 cut(s) | 506 |
| FaiI | YATR | 5 cut(s) | 198, 305, 334, 369, 504 |
| FaqI | GGGAC | 1 cut(s) | 303 |
| FatI | CATG | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 98, 194, 434 |
| FokI | GGATG | 3 cut(s) | 68, 116, 218 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 98, 194, 434 |
| FspBI | CTAG | 1 cut(s) | 515 |
| GlaI | GCGC | 1 cut(s) | 232 |
| GluI | GCNGC | 4 cut(s) | 42, 98, 194, 434 |
| HaeII | RGCGCY | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 1 cut(s) | 506 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HindIII | AAGCTT | 2 cut(s) | 49, 245 |
| HinfI | GANTC | 1 cut(s) | 382 |
| HpaII | CCGG | 1 cut(s) | 94 |
| HphI | GGTGA | 1 cut(s) | 214 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 2 cut(s) | 140, 254 |
| Hpy188III | TCNNGA | 1 cut(s) | 394 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 2 cut(s) | 55, 155 |
| HpyCH4III | ACNGT | 1 cut(s) | 163 |
| HpyCH4V | TGCA | 2 cut(s) | 22, 280 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 286 |
| HpyF3I | CTNAG | 6 cut(s) | 15, 114, 265, 411, 456, 528 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| HspAI | GCGC | 1 cut(s) | 231 |
| Kzo9I | GATC | 2 cut(s) | 133, 261 |
| LmnI | GCTCC | 2 cut(s) | 78, 452 |
| LpnPI | CCDG | 9 cut(s) | 86, 107, 175, 186, 231, 281, 360, 387, 470 |
| Lsp1109I | GCAGC | 4 cut(s) | 28, 84, 205, 420 |
| LweI | GCATC | 3 cut(s) | 46, 60, 302 |
| MaeI | CTAG | 1 cut(s) | 515 |
| MaeIII | GTNAC | 2 cut(s) | 220, 427 |
| MalI | GATC | 2 cut(s) | 135, 263 |
| MboI | GATC | 2 cut(s) | 133, 261 |
| MboII | GAAGA | 3 cut(s) | 333, 336, 382 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MflI | RGATCY | 2 cut(s) | 133, 261 |
| MhlI | GDGCHC | 1 cut(s) | 282 |
| MluCI | AATT | 2 cut(s) | 84, 479 |
| MnlI | CCTC | 4 cut(s) | 172, 248, 262, 460 |
| MseI | TTAA | 1 cut(s) | 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 161 |
| MspI | CCGG | 1 cut(s) | 94 |
| MspR9I | CCNGG | 1 cut(s) | 375 |
| MunI | CAATTG | 1 cut(s) | 84 |
| MvaI | CCWGG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 286 |
| NdeII | GATC | 2 cut(s) | 133, 261 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 1 cut(s) | 319 |
| NmuCI | GTSAC | 2 cut(s) | 220, 427 |
| NspI | RCATGY | 1 cut(s) | 506 |
| NspV | TTCGAA | 1 cut(s) | 347 |
| OliI | CACNNNNGTG | 1 cut(s) | 161 |
| PfeI | GAWTC | 1 cut(s) | 382 |
| PkrI | GCNGC | 4 cut(s) | 43, 99, 195, 435 |
| Psp6I | CCWGG | 1 cut(s) | 373 |
| PspGI | CCWGG | 1 cut(s) | 373 |
| PspN4I | GGNNCC | 1 cut(s) | 319 |
| PspPI | GGNCC | 2 cut(s) | 317, 518 |
| PsuI | RGATCY | 2 cut(s) | 133, 261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 161 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| SatI | GCNGC | 4 cut(s) | 42, 98, 194, 434 |
| Sau3AI | GATC | 2 cut(s) | 133, 261 |
| Sau96I | GGNCC | 2 cut(s) | 317, 518 |
| ScrFI | CCNGG | 1 cut(s) | 375 |
| SduI | GDGCHC | 1 cut(s) | 282 |
| SetI | ASST | 7 cut(s) | 53, 147, 227, 249, 288, 427, 457 |
| SfaNI | GCATC | 3 cut(s) | 46, 60, 302 |
| SfuI | TTCGAA | 1 cut(s) | 347 |
| SinI | GGWCC | 2 cut(s) | 317, 518 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 161 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| Sse9I | AATT | 2 cut(s) | 84, 479 |
| SsiI | CCGC | 1 cut(s) | 315 |
| SspMI | CTAG | 1 cut(s) | 515 |
| StyD4I | CCNGG | 1 cut(s) | 373 |
| TaaI | ACNGT | 1 cut(s) | 163 |
| TaqI | TCGA | 1 cut(s) | 347 |
| TasI | AATT | 2 cut(s) | 84, 479 |
| TfiI | GAWTC | 1 cut(s) | 382 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TscAI | CASTG | 1 cut(s) | 29 |
| TseFI | GTSAC | 2 cut(s) | 220, 427 |
| TseI | GCWGC | 4 cut(s) | 41, 97, 193, 433 |
| Tsp45I | GTSAC | 2 cut(s) | 220, 427 |
| TspDTI | ATGAA | 1 cut(s) | 430 |
| TspRI | CASTG | 1 cut(s) | 29 |
| VneI | GTGCAC | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 2 cut(s) | 317, 518 |
| XapI | RAATTY | 1 cut(s) | 479 |
| XceI | RCATGY | 1 cut(s) | 506 |
| XspI | CTAG | 1 cut(s) | 515 |