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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 336 |
| AciI | CCGC | 3 cut(s) | 188, 300, 347 |
| AclWI | GGATC | 1 cut(s) | 494 |
| AcsI | RAATTY | 2 cut(s) | 452, 664 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 116 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 154, 326, 353, 424, 587, 763, 869, 894 |
| AgsI | TTSAA | 7 cut(s) | 41, 61, 102, 458, 550, 743, 878 |
| AhlI | ACTAGT | 1 cut(s) | 719 |
| AjiI | CACGTC | 1 cut(s) | 913 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| AluBI | AGCT | 3 cut(s) | 376, 400, 778 |
| AluI | AGCT | 3 cut(s) | 376, 400, 778 |
| Alw21I | GWGCWC | 1 cut(s) | 780 |
| AlwI | GGATC | 1 cut(s) | 494 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApeKI | GCWGC | 1 cut(s) | 349 |
| ApoI | RAATTY | 2 cut(s) | 452, 664 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 570 |
| AspS9I | GGNCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| AsuHPI | GGTGA | 4 cut(s) | 159, 192, 198, 234 |
| AsuII | TTCGAA | 1 cut(s) | 509 |
| AvaII | GGWCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| BanII | GRGCYC | 1 cut(s) | 780 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 128, 160 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 780 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BccI | CCATC | 4 cut(s) | 190, 211, 244, 522 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BcuI | ACTAGT | 1 cut(s) | 719 |
| BfaI | CTAG | 2 cut(s) | 720, 916 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BisI | GCNGC | 1 cut(s) | 350 |
| BlsI | GCNGC | 1 cut(s) | 351 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| Bme18I | GGWCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| BmgBI | CACGTC | 1 cut(s) | 913 |
| BmgT120I | GGNCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| BmiI | GGNNCC | 5 cut(s) | 469, 479, 480, 536, 883 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BmsI | GCATC | 2 cut(s) | 287, 421 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 169, 201 |
| Bpu14I | TTCGAA | 1 cut(s) | 509 |
| BpuEI | CTTGAG | 2 cut(s) | 591, 764 |
| BsaJI | CCNNGG | 6 cut(s) | 153, 412, 472, 491, 523, 762 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 154, 326, 353, 424, 587, 763, 869, 894 |
| Bse3DI | GCAATG | 1 cut(s) | 768 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseDI | CCNNGG | 6 cut(s) | 153, 412, 472, 491, 523, 762 |
| BseGI | GGATG | 3 cut(s) | 278, 436, 533 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 154, 326, 353, 424, 587, 763, 869, 894 |
| BseMI | GCAATG | 1 cut(s) | 768 |
| BseMII | CTCAG | 2 cut(s) | 722, 884 |
| BseRI | GAGGAG | 2 cut(s) | 630, 910 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BsiHKAI | GWGCWC | 1 cut(s) | 780 |
| BslFI | GGGAC | 3 cut(s) | 464, 548, 807 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 154, 326, 353, 424, 587, 763, 869, 894 |
| BsmFI | GGGAC | 3 cut(s) | 464, 548, 807 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bsp119I | TTCGAA | 1 cut(s) | 509 |
| Bsp1286I | GDGCHC | 1 cut(s) | 780 |
| Bsp143I | GATC | 2 cut(s) | 127, 499 |
| Bsp19I | CCATGG | 1 cut(s) | 412 |
| BspACI | CCGC | 3 cut(s) | 188, 300, 347 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspCNI | CTCAG | 2 cut(s) | 721, 885 |
| BspHI | TCATGA | 2 cut(s) | 810, 823 |
| BspLI | GGNNCC | 5 cut(s) | 469, 479, 480, 536, 883 |
| BspPI | GGATC | 1 cut(s) | 494 |
| BspT104I | TTCGAA | 1 cut(s) | 509 |
| BsrDI | GCAATG | 1 cut(s) | 768 |
| BssECI | CCNNGG | 6 cut(s) | 153, 412, 472, 491, 523, 762 |
| BssMI | GATC | 2 cut(s) | 127, 499 |
| BssNAI | GTATAC | 1 cut(s) | 337 |
| BssT1I | CCWWGG | 4 cut(s) | 412, 472, 491, 762 |
| Bst1107I | GTATAC | 1 cut(s) | 337 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst4CI | ACNGT | 2 cut(s) | 307, 390 |
| Bst6I | CTCTTC | 4 cut(s) | 56, 131, 261, 895 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 50 |
| BstBI | TTCGAA | 1 cut(s) | 509 |
| BstC8I | GCNNGC | 1 cut(s) | 51 |
| BstDEI | CTNAG | 2 cut(s) | 708, 893 |
| BstDSI | CCRYGG | 1 cut(s) | 412 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 324 |
| BstF5I | GGATG | 3 cut(s) | 278, 436, 533 |
| BstKTI | GATC | 2 cut(s) | 130, 502 |
| BstMBI | GATC | 2 cut(s) | 127, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 784 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstNSI | RCATGY | 1 cut(s) | 637 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstZ17I | GTATAC | 1 cut(s) | 337 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BtgI | CCRYGG | 1 cut(s) | 412 |
| BtrI | CACGTC | 1 cut(s) | 913 |
| BtsCI | GGATG | 3 cut(s) | 278, 436, 533 |
| Cac8I | GCNNGC | 1 cut(s) | 51 |
| CciI | TCATGA | 2 cut(s) | 810, 823 |
| Cfr13I | GGNCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| Csp6I | GTAC | 1 cut(s) | 115 |
| CviAII | CATG | 4 cut(s) | 413, 634, 811, 824 |
| CviQI | GTAC | 1 cut(s) | 115 |
| DdeI | CTNAG | 2 cut(s) | 708, 893 |
| DpnI | GATC | 2 cut(s) | 129, 501 |
| DpnII | GATC | 2 cut(s) | 127, 499 |
| Eam1104I | CTCTTC | 4 cut(s) | 56, 131, 261, 895 |
| EarI | CTCTTC | 4 cut(s) | 56, 131, 261, 895 |
| EciI | GGCGGA | 1 cut(s) | 177 |
| Ecl136II | GAGCTC | 1 cut(s) | 778 |
| Eco130I | CCWWGG | 4 cut(s) | 412, 472, 491, 762 |
| Eco24I | GRGCYC | 1 cut(s) | 780 |
| Eco47I | GGWCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| Eco53kI | GAGCTC | 1 cut(s) | 778 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoICRI | GAGCTC | 1 cut(s) | 778 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 324 |
| EcoO109I | RGGNCCY | 2 cut(s) | 317, 478 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT14I | CCWWGG | 4 cut(s) | 412, 472, 491, 762 |
| EcoT38I | GRGCYC | 1 cut(s) | 780 |
| ErhI | CCWWGG | 4 cut(s) | 412, 472, 491, 762 |
| FaeI | CATG | 4 cut(s) | 416, 637, 814, 827 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 33, 65, 857, 889 |
| FaqI | GGGAC | 3 cut(s) | 464, 548, 807 |
| FatI | CATG | 4 cut(s) | 412, 633, 810, 823 |
| FauI | CCCGC | 1 cut(s) | 354 |
| FblI | GTMKAC | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 1 cut(s) | 350 |
| FokI | GGATG | 3 cut(s) | 265, 443, 540 |
| FriOI | GRGCYC | 1 cut(s) | 780 |
| Fsp4HI | GCNGC | 1 cut(s) | 350 |
| FspBI | CTAG | 2 cut(s) | 720, 916 |
| GluI | GCNGC | 1 cut(s) | 350 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| Hin1II | CATG | 4 cut(s) | 416, 637, 814, 827 |
| HinfI | GANTC | 4 cut(s) | 64, 158, 178, 658 |
| HphI | GGTGA | 4 cut(s) | 159, 192, 198, 234 |
| Hpy166II | GTNNAC | 7 cut(s) | 84, 117, 200, 337, 386, 555, 805 |
| Hpy188I | TCNGA | 3 cut(s) | 154, 576, 843 |
| Hpy188III | TCNNGA | 4 cut(s) | 449, 781, 811, 824 |
| Hpy8I | GTNNAC | 7 cut(s) | 84, 117, 200, 337, 386, 555, 805 |
| HpyAV | CCTTC | 7 cut(s) | 78, 102, 108, 159, 201, 305, 872 |
| HpyCH4III | ACNGT | 2 cut(s) | 307, 390 |
| HpyCH4IV | ACGT | 4 cut(s) | 196, 487, 601, 912 |
| HpyCH4V | TGCA | 2 cut(s) | 394, 773 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 784 |
| HpyF3I | CTNAG | 2 cut(s) | 708, 893 |
| HpySE526I | ACGT | 4 cut(s) | 196, 487, 601, 912 |
| Hsp92II | CATG | 4 cut(s) | 416, 637, 814, 827 |
| KflI | GGGWCCC | 1 cut(s) | 478 |
| Kzo9I | GATC | 2 cut(s) | 127, 499 |
| LmnI | GCTCC | 1 cut(s) | 405 |
| LpnPI | CCDG | 8 cut(s) | 222, 264, 312, 354, 510, 537, 695, 737 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| LweI | GCATC | 2 cut(s) | 287, 421 |
| MaeI | CTAG | 2 cut(s) | 720, 916 |
| MaeII | ACGT | 4 cut(s) | 196, 487, 601, 912 |
| MalI | GATC | 2 cut(s) | 129, 501 |
| MboI | GATC | 2 cut(s) | 127, 499 |
| MboII | GAAGA | 7 cut(s) | 73, 148, 231, 266, 278, 370, 912 |
| MhlI | GDGCHC | 1 cut(s) | 780 |
| MluCI | AATT | 6 cut(s) | 36, 120, 452, 664, 700, 852 |
| MlyI | GAGTC | 2 cut(s) | 73, 187 |
| MmeI | TCCRAC | 2 cut(s) | 246, 622 |
| MroXI | GAANNNNTTC | 1 cut(s) | 570 |
| MseI | TTAA | 2 cut(s) | 123, 420 |
| MslI | CAYNNNNRTG | 1 cut(s) | 828 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 784 |
| NcoI | CCATGG | 1 cut(s) | 412 |
| NdeII | GATC | 2 cut(s) | 127, 499 |
| NlaIII | CATG | 4 cut(s) | 416, 637, 814, 827 |
| NlaIV | GGNNCC | 5 cut(s) | 469, 479, 480, 536, 883 |
| NspI | RCATGY | 1 cut(s) | 637 |
| NspV | TTCGAA | 1 cut(s) | 509 |
| PagI | TCATGA | 2 cut(s) | 810, 823 |
| PdmI | GAANNNNTTC | 1 cut(s) | 570 |
| PfeI | GAWTC | 2 cut(s) | 158, 658 |
| PkrI | GCNGC | 1 cut(s) | 351 |
| PleI | GAGTC | 2 cut(s) | 72, 186 |
| PpsI | GAGTC | 2 cut(s) | 72, 186 |
| PpuMI | RGGWCCY | 2 cut(s) | 317, 478 |
| Psp124BI | GAGCTC | 1 cut(s) | 780 |
| Psp5II | RGGWCCY | 2 cut(s) | 317, 478 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PspN4I | GGNNCC | 5 cut(s) | 469, 479, 480, 536, 883 |
| PspPI | GGNCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| PspPPI | RGGWCCY | 2 cut(s) | 317, 478 |
| RsaI | GTAC | 1 cut(s) | 116 |
| RsaNI | GTAC | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 1 cut(s) | 828 |
| SacI | GAGCTC | 1 cut(s) | 780 |
| SaqAI | TTAA | 2 cut(s) | 123, 420 |
| SatI | GCNGC | 1 cut(s) | 350 |
| Sau3AI | GATC | 2 cut(s) | 127, 499 |
| Sau96I | GGNCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| SchI | GAGTC | 2 cut(s) | 73, 187 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SduI | GDGCHC | 1 cut(s) | 780 |
| SfaNI | GCATC | 2 cut(s) | 287, 421 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SfuI | TTCGAA | 1 cut(s) | 509 |
| SinI | GGWCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 828 |
| SmlI | CTYRAG | 2 cut(s) | 606, 779 |
| SmoI | CTYRAG | 2 cut(s) | 606, 779 |
| SpeI | ACTAGT | 1 cut(s) | 719 |
| Sse9I | AATT | 6 cut(s) | 36, 120, 452, 664, 700, 852 |
| SsiI | CCGC | 3 cut(s) | 188, 300, 347 |
| SspMI | CTAG | 2 cut(s) | 720, 916 |
| SstI | GAGCTC | 1 cut(s) | 780 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| StyI | CCWWGG | 4 cut(s) | 412, 472, 491, 762 |
| TaaI | ACNGT | 2 cut(s) | 307, 390 |
| TaiI | ACGT | 4 cut(s) | 199, 490, 604, 915 |
| TaqI | TCGA | 3 cut(s) | 309, 448, 509 |
| TaqII | GACCGA | 1 cut(s) | 20 |
| TasI | AATT | 6 cut(s) | 36, 120, 452, 664, 700, 852 |
| TatI | WGTACW | 1 cut(s) | 114 |
| TfiI | GAWTC | 2 cut(s) | 158, 658 |
| Tru1I | TTAA | 2 cut(s) | 123, 420 |
| Tru9I | TTAA | 2 cut(s) | 123, 420 |
| TseI | GCWGC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 3 cut(s) | 579, 799, 812 |
| VpaK11BI | GGWCC | 6 cut(s) | 317, 478, 535, 555, 611, 754 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 324 |
| XapI | RAATTY | 2 cut(s) | 452, 664 |
| XceI | RCATGY | 1 cut(s) | 637 |
| XmiI | GTMKAC | 1 cut(s) | 336 |
| XmnI | GAANNNNTTC | 1 cut(s) | 570 |
| XspI | CTAG | 2 cut(s) | 720, 916 |