transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 59 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 2 cut(s) | 324, 604 |
| AcsI | RAATTY | 1 cut(s) | 815 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 759 |
| AflII | CTTAAG | 1 cut(s) | 674 |
| AflIII | ACRYGT | 1 cut(s) | 821 |
| AgsI | TTSAA | 5 cut(s) | 284, 377, 526, 615, 863 |
| AluBI | AGCT | 2 cut(s) | 296, 809 |
| AluI | AGCT | 2 cut(s) | 296, 809 |
| Alw26I | GTCTC | 4 cut(s) | 228, 321, 504, 699 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Ama87I | CYCGRG | 1 cut(s) | 580 |
| AoxI | GGCC | 2 cut(s) | 324, 604 |
| ApeKI | GCWGC | 3 cut(s) | 170, 571, 665 |
| ApoI | RAATTY | 1 cut(s) | 815 |
| AspS9I | GGNCC | 2 cut(s) | 347, 727 |
| AsuC2I | CCSGG | 4 cut(s) | 194, 501, 581, 582 |
| AsuHPI | GGTGA | 1 cut(s) | 542 |
| AvaI | CYCGRG | 1 cut(s) | 580 |
| AvaII | GGWCC | 2 cut(s) | 347, 727 |
| BaeGI | GKGCMC | 1 cut(s) | 401 |
| BalI | TGGCCA | 1 cut(s) | 606 |
| BanII | GRGCYC | 2 cut(s) | 199, 752 |
| BbvI | GCAGC | 3 cut(s) | 182, 583, 652 |
| BccI | CCATC | 5 cut(s) | 316, 417, 522, 648, 757 |
| BceAI | ACGGC | 1 cut(s) | 260 |
| BcnI | CCSGG | 4 cut(s) | 194, 501, 581, 582 |
| BcoDI | GTCTC | 4 cut(s) | 228, 321, 504, 699 |
| BfrI | CTTAAG | 1 cut(s) | 674 |
| BisI | GCNGC | 3 cut(s) | 171, 572, 666 |
| BlsI | GCNGC | 3 cut(s) | 172, 573, 667 |
| Bme1390I | CCNGG | 4 cut(s) | 194, 501, 581, 582 |
| Bme18I | GGWCC | 2 cut(s) | 347, 727 |
| BmeT110I | CYCGRG | 1 cut(s) | 580 |
| BmgT120I | GGNCC | 2 cut(s) | 347, 727 |
| BmiI | GGNNCC | 2 cut(s) | 537, 751 |
| BmrFI | CCNGG | 4 cut(s) | 194, 501, 581, 582 |
| BmsI | GCATC | 2 cut(s) | 118, 391 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 523, 555 |
| BpuMI | CCSGG | 4 cut(s) | 194, 501, 581, 582 |
| BsaAI | YACGTR | 1 cut(s) | 95 |
| BsaI | GGTCTC | 2 cut(s) | 228, 504 |
| BsaJI | CCNNGG | 7 cut(s) | 165, 242, 467, 579, 580, 581, 601 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 759 |
| Bse1I | ACTGG | 1 cut(s) | 350 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 7 cut(s) | 165, 242, 467, 579, 580, 581, 601 |
| BseGI | GGATG | 4 cut(s) | 382, 428, 514, 768 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 759 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 2 cut(s) | 332, 710 |
| BseNI | ACTGG | 1 cut(s) | 350 |
| BseSI | GKGCMC | 1 cut(s) | 401 |
| BseXI | GCAGC | 3 cut(s) | 182, 583, 652 |
| BshFI | GGCC | 2 cut(s) | 326, 606 |
| BsiHKCI | CYCGRG | 1 cut(s) | 580 |
| BsiSI | CCGG | 3 cut(s) | 193, 500, 581 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 759 |
| BsmAI | GTCTC | 4 cut(s) | 228, 321, 504, 699 |
| BsnI | GGCC | 2 cut(s) | 326, 606 |
| Bso31I | GGTCTC | 2 cut(s) | 228, 504 |
| BsoBI | CYCGRG | 1 cut(s) | 580 |
| Bsp1286I | GDGCHC | 3 cut(s) | 199, 401, 752 |
| Bsp143I | GATC | 1 cut(s) | 475 |
| Bsp19I | CCATGG | 2 cut(s) | 165, 601 |
| BspACI | CCGC | 1 cut(s) | 59 |
| BspANI | GGCC | 2 cut(s) | 326, 606 |
| BspCNI | CTCAG | 2 cut(s) | 331, 709 |
| BspLI | GGNNCC | 2 cut(s) | 537, 751 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspTI | CTTAAG | 1 cut(s) | 674 |
| BspTNI | GGTCTC | 2 cut(s) | 228, 504 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 350 |
| BssECI | CCNNGG | 7 cut(s) | 165, 242, 467, 579, 580, 581, 601 |
| BssMI | GATC | 1 cut(s) | 475 |
| BssT1I | CCWWGG | 3 cut(s) | 165, 467, 601 |
| BstAFI | CTTAAG | 1 cut(s) | 674 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 253 |
| BstBAI | YACGTR | 1 cut(s) | 95 |
| BstDEI | CTNAG | 2 cut(s) | 318, 696 |
| BstDSI | CCRYGG | 3 cut(s) | 165, 242, 601 |
| BstF5I | GGATG | 4 cut(s) | 382, 428, 514, 768 |
| BstKTI | GATC | 1 cut(s) | 478 |
| BstMAI | GTCTC | 4 cut(s) | 228, 321, 504, 699 |
| BstMBI | GATC | 1 cut(s) | 475 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 253 |
| BstNSI | RCATGY | 2 cut(s) | 825, 859 |
| BstSCI | CCNGG | 4 cut(s) | 192, 499, 579, 580 |
| BstSLI | GKGCMC | 1 cut(s) | 401 |
| BstSNI | TACGTA | 1 cut(s) | 95 |
| BstV1I | GCAGC | 3 cut(s) | 182, 583, 652 |
| BsuRI | GGCC | 2 cut(s) | 326, 606 |
| BtgI | CCRYGG | 3 cut(s) | 165, 242, 601 |
| BtsCI | GGATG | 4 cut(s) | 382, 428, 514, 768 |
| Cfr13I | GGNCC | 2 cut(s) | 347, 727 |
| Cfr9I | CCCGGG | 1 cut(s) | 580 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 6 cut(s) | 166, 257, 602, 759, 822, 856 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 2 cut(s) | 318, 696 |
| DpnI | GATC | 1 cut(s) | 477 |
| DpnII | GATC | 1 cut(s) | 475 |
| DraI | TTTAAA | 1 cut(s) | 111 |
| EaeI | YGGCCR | 2 cut(s) | 324, 604 |
| Eco105I | TACGTA | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 3 cut(s) | 165, 467, 601 |
| Eco24I | GRGCYC | 2 cut(s) | 199, 752 |
| Eco31I | GGTCTC | 2 cut(s) | 228, 504 |
| Eco47I | GGWCC | 2 cut(s) | 347, 727 |
| Eco88I | CYCGRG | 1 cut(s) | 580 |
| EcoRI | GAATTC | 1 cut(s) | 815 |
| EcoT14I | CCWWGG | 3 cut(s) | 165, 467, 601 |
| EcoT38I | GRGCYC | 2 cut(s) | 199, 752 |
| ErhI | CCWWGG | 3 cut(s) | 165, 467, 601 |
| FaeI | CATG | 6 cut(s) | 169, 260, 605, 762, 825, 859 |
| FatI | CATG | 6 cut(s) | 165, 256, 601, 758, 821, 855 |
| Fnu4HI | GCNGC | 3 cut(s) | 171, 572, 666 |
| FokI | GGATG | 4 cut(s) | 369, 435, 501, 775 |
| FriOI | GRGCYC | 2 cut(s) | 199, 752 |
| Fsp4HI | GCNGC | 3 cut(s) | 171, 572, 666 |
| GluI | GCNGC | 3 cut(s) | 171, 572, 666 |
| HaeIII | GGCC | 2 cut(s) | 326, 606 |
| HapII | CCGG | 3 cut(s) | 193, 500, 581 |
| Hin1II | CATG | 6 cut(s) | 169, 260, 605, 762, 825, 859 |
| HinfI | GANTC | 4 cut(s) | 62, 82, 280, 611 |
| HpaII | CCGG | 3 cut(s) | 193, 500, 581 |
| HphI | GGTGA | 1 cut(s) | 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 727 |
| Hpy188I | TCNGA | 3 cut(s) | 277, 321, 391 |
| Hpy8I | GTNNAC | 1 cut(s) | 727 |
| HpyAV | CCTTC | 4 cut(s) | 212, 323, 396, 857 |
| HpyCH4IV | ACGT | 2 cut(s) | 94, 650 |
| HpyCH4V | TGCA | 3 cut(s) | 206, 256, 668 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 253 |
| HpyF3I | CTNAG | 2 cut(s) | 318, 696 |
| HpySE526I | ACGT | 2 cut(s) | 94, 650 |
| Hsp92II | CATG | 6 cut(s) | 169, 260, 605, 762, 825, 859 |
| Kzo9I | GATC | 1 cut(s) | 475 |
| LmnI | GCTCC | 3 cut(s) | 43, 535, 755 |
| LpnPI | CCDG | 5 cut(s) | 206, 363, 513, 594, 683 |
| Lsp1109I | GCAGC | 3 cut(s) | 182, 583, 652 |
| LweI | GCATC | 2 cut(s) | 118, 391 |
| MaeII | ACGT | 2 cut(s) | 94, 650 |
| MaeIII | GTNAC | 3 cut(s) | 646, 678, 851 |
| MalI | GATC | 1 cut(s) | 477 |
| MboI | GATC | 1 cut(s) | 475 |
| MboII | GAAGA | 3 cut(s) | 63, 349, 879 |
| MfeI | CAATTG | 1 cut(s) | 404 |
| MhlI | GDGCHC | 3 cut(s) | 199, 401, 752 |
| MlsI | TGGCCA | 1 cut(s) | 606 |
| MluCI | AATT | 9 cut(s) | 222, 290, 404, 669, 688, 731, 768, 815, 826 |
| MluNI | TGGCCA | 1 cut(s) | 606 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MmeI | TCCRAC | 2 cut(s) | 90, 485 |
| MnlI | CCTC | 8 cut(s) | 134, 191, 253, 411, 525, 549, 554, 558 |
| Mox20I | TGGCCA | 1 cut(s) | 606 |
| MscI | TGGCCA | 1 cut(s) | 606 |
| MseI | TTAA | 3 cut(s) | 21, 110, 675 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| Msp20I | TGGCCA | 1 cut(s) | 606 |
| MspCI | CTTAAG | 1 cut(s) | 674 |
| MspI | CCGG | 3 cut(s) | 193, 500, 581 |
| MspR9I | CCNGG | 4 cut(s) | 194, 501, 581, 582 |
| MunI | CAATTG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 253 |
| NciI | CCSGG | 4 cut(s) | 194, 501, 581, 582 |
| NcoI | CCATGG | 2 cut(s) | 165, 601 |
| NdeII | GATC | 1 cut(s) | 475 |
| NlaIII | CATG | 6 cut(s) | 169, 260, 605, 762, 825, 859 |
| NlaIV | GGNNCC | 2 cut(s) | 537, 751 |
| NspI | RCATGY | 2 cut(s) | 825, 859 |
| PciI | ACATGT | 1 cut(s) | 821 |
| PfeI | GAWTC | 3 cut(s) | 62, 280, 611 |
| PkrI | GCNGC | 3 cut(s) | 172, 573, 667 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| Ppu21I | YACGTR | 1 cut(s) | 95 |
| PscI | ACATGT | 1 cut(s) | 821 |
| PspN4I | GGNNCC | 2 cut(s) | 537, 751 |
| PspPI | GGNCC | 2 cut(s) | 347, 727 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 3 cut(s) | 21, 110, 675 |
| SatI | GCNGC | 3 cut(s) | 171, 572, 666 |
| Sau3AI | GATC | 1 cut(s) | 475 |
| Sau96I | GGNCC | 2 cut(s) | 347, 727 |
| SchI | GAGTC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 4 cut(s) | 194, 501, 581, 582 |
| SduI | GDGCHC | 3 cut(s) | 199, 401, 752 |
| SetI | ASST | 9 cut(s) | 97, 145, 183, 264, 298, 349, 550, 653, 811 |
| SfaNI | GCATC | 2 cut(s) | 118, 391 |
| SinI | GGWCC | 2 cut(s) | 347, 727 |
| SmaI | CCCGGG | 1 cut(s) | 582 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 674 |
| SmoI | CTYRAG | 1 cut(s) | 674 |
| SnaBI | TACGTA | 1 cut(s) | 95 |
| Sse9I | AATT | 9 cut(s) | 222, 290, 404, 669, 688, 731, 768, 815, 826 |
| SsiI | CCGC | 1 cut(s) | 59 |
| StyD4I | CCNGG | 4 cut(s) | 192, 499, 579, 580 |
| StyI | CCWWGG | 3 cut(s) | 165, 467, 601 |
| TaiI | ACGT | 2 cut(s) | 97, 653 |
| TasI | AATT | 9 cut(s) | 222, 290, 404, 669, 688, 731, 768, 815, 826 |
| TfiI | GAWTC | 3 cut(s) | 62, 280, 611 |
| Tru1I | TTAA | 3 cut(s) | 21, 110, 675 |
| Tru9I | TTAA | 3 cut(s) | 21, 110, 675 |
| TseI | GCWGC | 3 cut(s) | 170, 571, 665 |
| TspDTI | ATGAA | 2 cut(s) | 350, 828 |
| TspMI | CCCGGG | 1 cut(s) | 580 |
| Vha464I | CTTAAG | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 2 cut(s) | 347, 727 |
| XapI | RAATTY | 1 cut(s) | 815 |
| XceI | RCATGY | 2 cut(s) | 825, 859 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 525 |
| XmaI | CCCGGG | 1 cut(s) | 580 |