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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 265 |
| AccB1I | GGYRCC | 2 cut(s) | 265, 517 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 466 |
| AciI | CCGC | 2 cut(s) | 206, 365 |
| AcsI | RAATTY | 1 cut(s) | 226 |
| AcuI | CTGAAG | 1 cut(s) | 510 |
| AfaI | GTAC | 3 cut(s) | 122, 143, 267 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 212, 364, 427, 466 |
| AgsI | TTSAA | 2 cut(s) | 352, 426 |
| AjnI | CCWGG | 1 cut(s) | 217 |
| AluBI | AGCT | 5 cut(s) | 61, 389, 442, 502, 653 |
| AluI | AGCT | 5 cut(s) | 61, 389, 442, 502, 653 |
| Alw21I | GWGCWC | 3 cut(s) | 26, 444, 540 |
| Alw26I | GTCTC | 2 cut(s) | 153, 196 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| AoxI | GGCC | 3 cut(s) | 214, 257, 457 |
| ApoI | RAATTY | 1 cut(s) | 226 |
| Asp718I | GGTACC | 1 cut(s) | 265 |
| AspA2I | CCTAGG | 1 cut(s) | 97 |
| AspS9I | GGNCC | 4 cut(s) | 215, 457, 580, 646 |
| AsuHPI | GGTGA | 2 cut(s) | 294, 427 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| AvaII | GGWCC | 2 cut(s) | 580, 646 |
| AvrII | CCTAGG | 1 cut(s) | 97 |
| AxyI | CCTNAGG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 2 cut(s) | 39, 331 |
| BanI | GGYRCC | 2 cut(s) | 265, 517 |
| BanII | GRGCYC | 2 cut(s) | 156, 444 |
| Bbv12I | GWGCWC | 3 cut(s) | 26, 444, 540 |
| BccI | CCATC | 1 cut(s) | 557 |
| BciT130I | CCWGG | 1 cut(s) | 219 |
| BcoDI | GTCTC | 2 cut(s) | 153, 196 |
| BfaI | CTAG | 4 cut(s) | 71, 98, 558, 575 |
| BlnI | CCTAGG | 1 cut(s) | 97 |
| Bme1390I | CCNGG | 1 cut(s) | 219 |
| Bme18I | GGWCC | 2 cut(s) | 580, 646 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 4 cut(s) | 215, 457, 580, 646 |
| BmiI | GGNNCC | 3 cut(s) | 267, 519, 648 |
| BmrFI | CCNGG | 1 cut(s) | 219 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 193, 225 |
| BpuEI | CTTGAG | 5 cut(s) | 15, 195, 220, 378, 428 |
| BsaAI | YACGTR | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 4 cut(s) | 97, 217, 399, 527 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 212, 364, 427, 466 |
| Bse21I | CCTNAGG | 1 cut(s) | 261 |
| BseBI | CCWGG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 4 cut(s) | 97, 217, 399, 527 |
| BseGI | GGATG | 2 cut(s) | 24, 640 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 212, 364, 427, 466 |
| BseMII | CTCAG | 3 cut(s) | 169, 245, 275 |
| BseSI | GKGCMC | 2 cut(s) | 39, 331 |
| BseYI | CCCAGC | 2 cut(s) | 57, 649 |
| BshFI | GGCC | 3 cut(s) | 216, 259, 459 |
| BshNI | GGYRCC | 2 cut(s) | 265, 517 |
| BsiHKAI | GWGCWC | 3 cut(s) | 26, 444, 540 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BslFI | GGGAC | 2 cut(s) | 281, 340 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 212, 364, 427, 466 |
| BsmAI | GTCTC | 2 cut(s) | 153, 196 |
| BsmFI | GGGAC | 2 cut(s) | 281, 340 |
| BsnI | GGCC | 3 cut(s) | 216, 259, 459 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 6 cut(s) | 26, 39, 156, 331, 444, 540 |
| BspACI | CCGC | 2 cut(s) | 206, 365 |
| BspANI | GGCC | 3 cut(s) | 216, 259, 459 |
| BspCNI | CTCAG | 3 cut(s) | 168, 244, 274 |
| BspHI | TCATGA | 1 cut(s) | 474 |
| BspLI | GGNNCC | 3 cut(s) | 267, 519, 648 |
| BspT107I | GGYRCC | 2 cut(s) | 265, 517 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BssECI | CCNNGG | 4 cut(s) | 97, 217, 399, 527 |
| BssT1I | CCWWGG | 3 cut(s) | 97, 399, 527 |
| Bst2UI | CCWGG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 2 cut(s) | 348, 517 |
| BstBAI | YACGTR | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 3 cut(s) | 63, 540, 572 |
| BstDEI | CTNAG | 3 cut(s) | 155, 231, 261 |
| BstEII | GGTNACC | 1 cut(s) | 415 |
| BstF5I | GGATG | 2 cut(s) | 24, 640 |
| BstMAI | GTCTC | 2 cut(s) | 153, 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 395 |
| BstNI | CCWGG | 1 cut(s) | 219 |
| BstNSI | RCATGY | 1 cut(s) | 574 |
| BstPI | GGTNACC | 1 cut(s) | 415 |
| BstSCI | CCNGG | 1 cut(s) | 217 |
| BstSLI | GKGCMC | 2 cut(s) | 39, 331 |
| BstSNI | TACGTA | 1 cut(s) | 141 |
| Bsu36I | CCTNAGG | 1 cut(s) | 261 |
| BsuRI | GGCC | 3 cut(s) | 216, 259, 459 |
| BtsCI | GGATG | 2 cut(s) | 24, 640 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| Cac8I | GCNNGC | 3 cut(s) | 63, 540, 572 |
| CciI | TCATGA | 1 cut(s) | 474 |
| Cfr13I | GGNCC | 4 cut(s) | 215, 457, 580, 646 |
| CseI | GACGC | 2 cut(s) | 224, 576 |
| Csp6I | GTAC | 3 cut(s) | 121, 142, 266 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 228, 263 |
| CviAII | CATG | 4 cut(s) | 78, 243, 475, 571 |
| CviQI | GTAC | 3 cut(s) | 121, 142, 266 |
| DdeI | CTNAG | 3 cut(s) | 155, 231, 261 |
| Ecl136II | GAGCTC | 1 cut(s) | 442 |
| Eco105I | TACGTA | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 3 cut(s) | 97, 399, 527 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 2 cut(s) | 156, 444 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 2 cut(s) | 580, 646 |
| Eco53kI | GAGCTC | 1 cut(s) | 442 |
| Eco57I | CTGAAG | 1 cut(s) | 510 |
| Eco81I | CCTNAGG | 1 cut(s) | 261 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| Eco91I | GGTNACC | 1 cut(s) | 415 |
| EcoICRI | GAGCTC | 1 cut(s) | 442 |
| EcoO109I | RGGNCCY | 1 cut(s) | 646 |
| EcoO65I | GGTNACC | 1 cut(s) | 415 |
| EcoRI | GAATTC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 3 cut(s) | 97, 399, 527 |
| EcoT38I | GRGCYC | 2 cut(s) | 156, 444 |
| ErhI | CCWWGG | 3 cut(s) | 97, 399, 527 |
| FaeI | CATG | 4 cut(s) | 81, 246, 478, 574 |
| FaiI | YATR | 7 cut(s) | 79, 244, 339, 476, 572, 590, 597 |
| FaqI | GGGAC | 2 cut(s) | 281, 340 |
| FatI | CATG | 4 cut(s) | 77, 242, 474, 570 |
| FauI | CCCGC | 1 cut(s) | 358 |
| FokI | GGATG | 2 cut(s) | 31, 647 |
| FriOI | GRGCYC | 2 cut(s) | 156, 444 |
| FspBI | CTAG | 4 cut(s) | 71, 98, 558, 575 |
| GsaI | CCCAGC | 2 cut(s) | 61, 653 |
| HaeIII | GGCC | 3 cut(s) | 216, 259, 459 |
| HgaI | GACGC | 2 cut(s) | 224, 576 |
| Hin1II | CATG | 4 cut(s) | 81, 246, 478, 574 |
| HincII | GTYRAC | 1 cut(s) | 91 |
| HindII | GTYRAC | 1 cut(s) | 91 |
| HinfI | GANTC | 3 cut(s) | 28, 83, 448 |
| HpaI | GTTAAC | 1 cut(s) | 91 |
| HphI | GGTGA | 2 cut(s) | 294, 427 |
| Hpy166II | GTNNAC | 4 cut(s) | 91, 239, 566, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 225 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 445, 475 |
| Hpy8I | GTNNAC | 4 cut(s) | 91, 239, 566, 580 |
| HpyAV | CCTTC | 4 cut(s) | 309, 593, 625, 637 |
| HpyCH4III | ACNGT | 2 cut(s) | 348, 517 |
| HpyCH4IV | ACGT | 1 cut(s) | 140 |
| HpyCH4V | TGCA | 1 cut(s) | 437 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 395 |
| HpyF3I | CTNAG | 3 cut(s) | 155, 231, 261 |
| HpySE526I | ACGT | 1 cut(s) | 140 |
| Hsp92II | CATG | 4 cut(s) | 81, 246, 478, 574 |
| KpnI | GGTACC | 1 cut(s) | 269 |
| KspAI | GTTAAC | 1 cut(s) | 91 |
| LpnPI | CCDG | 9 cut(s) | 71, 135, 204, 231, 248, 321, 398, 480, 663 |
| MaeI | CTAG | 4 cut(s) | 71, 98, 558, 575 |
| MaeII | ACGT | 1 cut(s) | 140 |
| MaeIII | GTNAC | 1 cut(s) | 415 |
| MboII | GAAGA | 3 cut(s) | 614, 617, 620 |
| MhlI | GDGCHC | 6 cut(s) | 26, 39, 156, 331, 444, 540 |
| MluCI | AATT | 4 cut(s) | 145, 226, 334, 483 |
| MlyI | GAGTC | 1 cut(s) | 22 |
| MnlI | CCTC | 9 cut(s) | 76, 104, 111, 219, 249, 270, 279, 315, 613 |
| MseI | TTAA | 2 cut(s) | 90, 381 |
| MslI | CAYNNNNRTG | 1 cut(s) | 575 |
| MspR9I | CCNGG | 1 cut(s) | 219 |
| MvaI | CCWGG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 395 |
| NlaIII | CATG | 4 cut(s) | 81, 246, 478, 574 |
| NlaIV | GGNNCC | 3 cut(s) | 267, 519, 648 |
| NmuCI | GTSAC | 1 cut(s) | 415 |
| NspI | RCATGY | 1 cut(s) | 574 |
| PaeI | GCATGC | 1 cut(s) | 574 |
| PaeR7I | CTCGAG | 1 cut(s) | 115 |
| PagI | TCATGA | 1 cut(s) | 474 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PfeI | GAWTC | 2 cut(s) | 83, 448 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 466 |
| PleI | GAGTC | 1 cut(s) | 22 |
| PpsI | GAGTC | 1 cut(s) | 22 |
| Ppu21I | YACGTR | 1 cut(s) | 141 |
| PpuMI | RGGWCCY | 1 cut(s) | 646 |
| Psp124BI | GAGCTC | 1 cut(s) | 444 |
| Psp5II | RGGWCCY | 1 cut(s) | 646 |
| Psp6I | CCWGG | 1 cut(s) | 217 |
| PspEI | GGTNACC | 1 cut(s) | 415 |
| PspFI | CCCAGC | 2 cut(s) | 57, 649 |
| PspGI | CCWGG | 1 cut(s) | 217 |
| PspN4I | GGNNCC | 3 cut(s) | 267, 519, 648 |
| PspPI | GGNCC | 4 cut(s) | 215, 457, 580, 646 |
| PspPPI | RGGWCCY | 1 cut(s) | 646 |
| PspXI | VCTCGAGB | 1 cut(s) | 115 |
| RsaI | GTAC | 3 cut(s) | 122, 143, 267 |
| RsaNI | GTAC | 3 cut(s) | 121, 142, 266 |
| RseI | CAYNNNNRTG | 1 cut(s) | 575 |
| SacI | GAGCTC | 1 cut(s) | 444 |
| SaqAI | TTAA | 2 cut(s) | 90, 381 |
| Sau96I | GGNCC | 4 cut(s) | 215, 457, 580, 646 |
| SchI | GAGTC | 1 cut(s) | 22 |
| ScrFI | CCNGG | 1 cut(s) | 219 |
| SduI | GDGCHC | 6 cut(s) | 26, 39, 156, 331, 444, 540 |
| Sfr274I | CTCGAG | 1 cut(s) | 115 |
| SinI | GGWCC | 2 cut(s) | 580, 646 |
| SlaI | CTCGAG | 1 cut(s) | 115 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 575 |
| SmlI | CTYRAG | 7 cut(s) | 6, 30, 115, 199, 210, 393, 443 |
| SmoI | CTYRAG | 7 cut(s) | 6, 30, 115, 199, 210, 393, 443 |
| SnaBI | TACGTA | 1 cut(s) | 141 |
| SphI | GCATGC | 1 cut(s) | 574 |
| Sse9I | AATT | 4 cut(s) | 145, 226, 334, 483 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SsiI | CCGC | 2 cut(s) | 206, 365 |
| SspI | AATATT | 1 cut(s) | 292 |
| SspMI | CTAG | 4 cut(s) | 71, 98, 558, 575 |
| SstI | GAGCTC | 1 cut(s) | 444 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 1 cut(s) | 217 |
| StyI | CCWWGG | 3 cut(s) | 97, 399, 527 |
| TaaI | ACNGT | 2 cut(s) | 348, 517 |
| TaiI | ACGT | 1 cut(s) | 143 |
| TaqI | TCGA | 2 cut(s) | 26, 116 |
| TasI | AATT | 4 cut(s) | 145, 226, 334, 483 |
| TfiI | GAWTC | 2 cut(s) | 83, 448 |
| Tru1I | TTAA | 2 cut(s) | 90, 381 |
| Tru9I | TTAA | 2 cut(s) | 90, 381 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TseFI | GTSAC | 1 cut(s) | 415 |
| Tsp45I | GTSAC | 1 cut(s) | 415 |
| TspDTI | ATGAA | 3 cut(s) | 357, 463, 615 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 466 |
| VpaK11BI | GGWCC | 2 cut(s) | 580, 646 |
| XapI | RAATTY | 1 cut(s) | 226 |
| XbaI | TCTAGA | 1 cut(s) | 70 |
| XceI | RCATGY | 1 cut(s) | 574 |
| XhoI | CTCGAG | 1 cut(s) | 115 |
| XmaJI | CCTAGG | 1 cut(s) | 97 |
| XspI | CTAG | 4 cut(s) | 71, 98, 558, 575 |