transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 129 |
| AcoI | YGGCCR | 2 cut(s) | 282, 288 |
| AfaI | GTAC | 1 cut(s) | 74 |
| AgsI | TTSAA | 5 cut(s) | 80, 100, 179, 353, 358 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 333, 365 |
| AluBI | AGCT | 1 cut(s) | 233 |
| AluI | AGCT | 1 cut(s) | 233 |
| Alw26I | GTCTC | 2 cut(s) | 265, 338 |
| AlwI | GGATC | 1 cut(s) | 129 |
| AoxI | GGCC | 2 cut(s) | 282, 288 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 168 |
| BalI | TGGCCA | 1 cut(s) | 284 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 222, 254 |
| BccI | CCATC | 1 cut(s) | 305 |
| BceAI | ACGGC | 1 cut(s) | 303 |
| BcoDI | GTCTC | 2 cut(s) | 265, 338 |
| BfaI | CTAG | 2 cut(s) | 83, 173 |
| BfmI | CTRYAG | 1 cut(s) | 201 |
| BmsI | GCATC | 1 cut(s) | 57 |
| BsaI | GGTCTC | 1 cut(s) | 265 |
| BsaJI | CCNNGG | 1 cut(s) | 285 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| Bse3DI | GCAATG | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 285 |
| BseGI | GGATG | 1 cut(s) | 379 |
| BseMI | GCAATG | 1 cut(s) | 33 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BshFI | GGCC | 2 cut(s) | 284, 290 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BsmAI | GTCTC | 2 cut(s) | 265, 338 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| BsnI | GGCC | 2 cut(s) | 284, 290 |
| Bso31I | GGTCTC | 1 cut(s) | 265 |
| Bsp143I | GATC | 2 cut(s) | 134, 244 |
| BspANI | GGCC | 2 cut(s) | 284, 290 |
| BspMAI | CTGCAG | 1 cut(s) | 205 |
| BspPI | GGATC | 1 cut(s) | 129 |
| BspTNI | GGTCTC | 1 cut(s) | 265 |
| BsrDI | GCAATG | 1 cut(s) | 33 |
| BssECI | CCNNGG | 1 cut(s) | 285 |
| BssMI | GATC | 2 cut(s) | 134, 244 |
| Bst4CI | ACNGT | 2 cut(s) | 334, 349 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstF5I | GGATG | 1 cut(s) | 379 |
| BstKTI | GATC | 2 cut(s) | 137, 247 |
| BstMAI | GTCTC | 2 cut(s) | 265, 338 |
| BstMBI | GATC | 2 cut(s) | 134, 244 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 262 |
| BstSFI | CTRYAG | 1 cut(s) | 201 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| BsuRI | GGCC | 2 cut(s) | 284, 290 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtsCI | GGATG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 339 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| Csp6I | GTAC | 1 cut(s) | 73 |
| CviAII | CATG | 3 cut(s) | 223, 242, 280 |
| CviJI | RGCY | 4 cut(s) | 104, 233, 284, 290 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 233, 284, 290 |
| CviQI | GTAC | 1 cut(s) | 73 |
| DpnI | GATC | 2 cut(s) | 136, 246 |
| DpnII | GATC | 2 cut(s) | 134, 244 |
| DraI | TTTAAA | 1 cut(s) | 367 |
| EaeI | YGGCCR | 2 cut(s) | 282, 288 |
| Eco31I | GGTCTC | 1 cut(s) | 265 |
| FaeI | CATG | 3 cut(s) | 226, 245, 283 |
| FaiI | YATR | 6 cut(s) | 158, 224, 239, 243, 281, 329 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 3 cut(s) | 222, 241, 279 |
| FokI | GGATG | 1 cut(s) | 366 |
| FspBI | CTAG | 2 cut(s) | 83, 173 |
| HaeIII | GGCC | 2 cut(s) | 284, 290 |
| Hin1II | CATG | 3 cut(s) | 226, 245, 283 |
| HinfI | GANTC | 1 cut(s) | 318 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188III | TCNNGA | 2 cut(s) | 248, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| HpyAV | CCTTC | 3 cut(s) | 16, 86, 393 |
| HpyCH4III | ACNGT | 2 cut(s) | 334, 349 |
| HpyCH4V | TGCA | 4 cut(s) | 128, 203, 310, 402 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 262 |
| Hsp92II | CATG | 3 cut(s) | 226, 245, 283 |
| Kzo9I | GATC | 2 cut(s) | 134, 244 |
| LmnI | GCTCC | 1 cut(s) | 238 |
| LpnPI | CCDG | 1 cut(s) | 213 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeI | CTAG | 2 cut(s) | 83, 173 |
| MalI | GATC | 2 cut(s) | 136, 246 |
| MboI | GATC | 2 cut(s) | 134, 244 |
| MboII | GAAGA | 3 cut(s) | 176, 239, 378 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MlsI | TGGCCA | 1 cut(s) | 284 |
| MluCI | AATT | 1 cut(s) | 353 |
| MluNI | TGGCCA | 1 cut(s) | 284 |
| MlyI | GAGTC | 1 cut(s) | 312 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 2 cut(s) | 146, 332 |
| Mox20I | TGGCCA | 1 cut(s) | 284 |
| MroXI | GAANNNNTTC | 1 cut(s) | 168 |
| MscI | TGGCCA | 1 cut(s) | 284 |
| MseI | TTAA | 2 cut(s) | 56, 366 |
| MslI | CAYNNNNRTG | 2 cut(s) | 246, 305 |
| Msp20I | TGGCCA | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 262 |
| NdeII | GATC | 2 cut(s) | 134, 244 |
| NlaIII | CATG | 3 cut(s) | 226, 245, 283 |
| PdmI | GAANNNNTTC | 1 cut(s) | 168 |
| PleI | GAGTC | 1 cut(s) | 312 |
| PpsI | GAGTC | 1 cut(s) | 312 |
| PstI | CTGCAG | 1 cut(s) | 205 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 74 |
| RsaNI | GTAC | 1 cut(s) | 73 |
| RseI | CAYNNNNRTG | 2 cut(s) | 246, 305 |
| SaqAI | TTAA | 2 cut(s) | 56, 366 |
| Sau3AI | GATC | 2 cut(s) | 134, 244 |
| SchI | GAGTC | 1 cut(s) | 312 |
| SetI | ASST | 5 cut(s) | 78, 88, 157, 235, 277 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| SfcI | CTRYAG | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 246, 305 |
| Sse9I | AATT | 1 cut(s) | 353 |
| SspI | AATATT | 1 cut(s) | 261 |
| SspMI | CTAG | 2 cut(s) | 83, 173 |
| TaaI | ACNGT | 2 cut(s) | 334, 349 |
| TaqI | TCGA | 1 cut(s) | 408 |
| TasI | AATT | 1 cut(s) | 353 |
| Tru1I | TTAA | 2 cut(s) | 56, 366 |
| Tru9I | TTAA | 2 cut(s) | 56, 366 |
| TscAI | CASTG | 2 cut(s) | 75, 339 |
| TspDTI | ATGAA | 3 cut(s) | 105, 268, 378 |
| TspGWI | ACGGA | 1 cut(s) | 127 |
| TspRI | CASTG | 2 cut(s) | 75, 339 |
| XmnI | GAANNNNTTC | 1 cut(s) | 168 |
| XspI | CTAG | 2 cut(s) | 83, 173 |