transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 9 - 102 | 5.2e-19 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 168 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 100, 257 |
| AflIII | ACRYGT | 1 cut(s) | 273 |
| AgsI | TTSAA | 3 cut(s) | 19, 46, 229 |
| AluBI | AGCT | 2 cut(s) | 22, 241 |
| AluI | AGCT | 2 cut(s) | 22, 241 |
| AspS9I | GGNCC | 1 cut(s) | 165 |
| AvaII | GGWCC | 1 cut(s) | 165 |
| BbsI | GAAGAC | 2 cut(s) | 72, 297 |
| BciVI | GTATCC | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 101 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme18I | GGWCC | 1 cut(s) | 165 |
| BmgT120I | GGNCC | 1 cut(s) | 165 |
| BpiI | GAAGAC | 2 cut(s) | 72, 297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 23 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 100, 257 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 100, 257 |
| BseRI | GAGGAG | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 100, 257 |
| Bsp143I | GATC | 1 cut(s) | 190 |
| BspACI | CCGC | 1 cut(s) | 168 |
| BssMI | GATC | 1 cut(s) | 190 |
| BstDEI | CTNAG | 2 cut(s) | 23, 129 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstKTI | GATC | 1 cut(s) | 193 |
| BstMBI | GATC | 1 cut(s) | 190 |
| BstNSI | RCATGY | 1 cut(s) | 277 |
| BstV2I | GAAGAC | 2 cut(s) | 72, 297 |
| BsuI | GTATCC | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 1 cut(s) | 165 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CviAII | CATG | 3 cut(s) | 36, 216, 274 |
| CviJI | RGCY | 4 cut(s) | 22, 67, 241, 285 |
| CviKI_1 | RGCY | 4 cut(s) | 22, 67, 241, 285 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 2 cut(s) | 23, 129 |
| DpnI | GATC | 1 cut(s) | 192 |
| DpnII | GATC | 1 cut(s) | 190 |
| Eco47I | GGWCC | 1 cut(s) | 165 |
| FaeI | CATG | 3 cut(s) | 39, 219, 277 |
| FaiI | YATR | 6 cut(s) | 37, 110, 217, 258, 275, 310 |
| FatI | CATG | 3 cut(s) | 35, 215, 273 |
| FokI | GGATG | 1 cut(s) | 23 |
| Hin1II | CATG | 3 cut(s) | 39, 219, 277 |
| HindIII | AAGCTT | 1 cut(s) | 20 |
| Hpy188III | TCNNGA | 4 cut(s) | 194, 209, 229, 269 |
| HpyAV | CCTTC | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 1 cut(s) | 112 |
| HpyF3I | CTNAG | 2 cut(s) | 23, 129 |
| Hsp92II | CATG | 3 cut(s) | 39, 219, 277 |
| Kzo9I | GATC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 192 |
| MboI | GATC | 1 cut(s) | 190 |
| MboII | GAAGA | 4 cut(s) | 72, 116, 200, 297 |
| MnlI | CCTC | 3 cut(s) | 153, 156, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 278 |
| NdeII | GATC | 1 cut(s) | 190 |
| NlaIII | CATG | 3 cut(s) | 39, 219, 277 |
| NspI | RCATGY | 1 cut(s) | 277 |
| PciI | ACATGT | 1 cut(s) | 273 |
| PscI | ACATGT | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 165 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 278 |
| Sau3AI | GATC | 1 cut(s) | 190 |
| Sau96I | GGNCC | 1 cut(s) | 165 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| SetI | ASST | 4 cut(s) | 24, 29, 227, 243 |
| SinI | GGWCC | 1 cut(s) | 165 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 278 |
| SsiI | CCGC | 1 cut(s) | 168 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TspDTI | ATGAA | 1 cut(s) | 297 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 165 |
| XceI | RCATGY | 1 cut(s) | 277 |
| ZrmI | AGTACT | 1 cut(s) | 134 |