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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 156 |
| AccBSI | CCGCTC | 1 cut(s) | 21 |
| AciI | CCGC | 2 cut(s) | 19, 135 |
| AclWI | GGATC | 1 cut(s) | 671 |
| AcoI | YGGCCR | 3 cut(s) | 42, 52, 127 |
| AcsI | RAATTY | 1 cut(s) | 385 |
| AcyI | GRCGYC | 1 cut(s) | 30 |
| AfaI | GTAC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 364, 601, 634 |
| AflII | CTTAAG | 1 cut(s) | 443 |
| AgeI | ACCGGT | 1 cut(s) | 153 |
| AgsI | TTSAA | 1 cut(s) | 353 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AluBI | AGCT | 6 cut(s) | 144, 398, 437, 442, 502, 574 |
| AluI | AGCT | 6 cut(s) | 144, 398, 437, 442, 502, 574 |
| AlwI | GGATC | 1 cut(s) | 671 |
| AoxI | GGCC | 7 cut(s) | 42, 52, 108, 127, 269, 603, 624 |
| ApoI | RAATTY | 1 cut(s) | 385 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 521, 553 |
| AsiGI | ACCGGT | 1 cut(s) | 153 |
| AspS9I | GGNCC | 5 cut(s) | 108, 236, 592, 604, 625 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaII | GGWCC | 2 cut(s) | 236, 592 |
| AxyI | CCTNAGG | 2 cut(s) | 252, 273 |
| BanI | GGYRCC | 1 cut(s) | 156 |
| BccI | CCATC | 1 cut(s) | 44 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BfaI | CTAG | 1 cut(s) | 177 |
| BfmI | CTRYAG | 1 cut(s) | 91 |
| BfrI | CTTAAG | 1 cut(s) | 443 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 2 cut(s) | 236, 592 |
| BmgT120I | GGNCC | 5 cut(s) | 108, 236, 592, 604, 625 |
| BmiI | GGNNCC | 3 cut(s) | 158, 238, 279 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 2 cut(s) | 103, 336 |
| Bpu10I | CCTNAGC | 1 cut(s) | 575 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 1 cut(s) | 378 |
| BsaHI | GRCGYC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 2 cut(s) | 7, 364 |
| BsaWI | WCCGGW | 1 cut(s) | 153 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 364, 601, 634 |
| Bse118I | RCCGGY | 2 cut(s) | 32, 153 |
| Bse21I | CCTNAGG | 2 cut(s) | 252, 273 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 2 cut(s) | 7, 364 |
| BseGI | GGATG | 3 cut(s) | 247, 586, 643 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 364, 601, 634 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseMII | CTCAG | 4 cut(s) | 266, 287, 429, 480 |
| BseRI | GAGGAG | 1 cut(s) | 647 |
| BshFI | GGCC | 7 cut(s) | 44, 54, 110, 129, 271, 605, 626 |
| BshNI | GGYRCC | 1 cut(s) | 156 |
| BshTI | ACCGGT | 1 cut(s) | 153 |
| BsiSI | CCGG | 6 cut(s) | 33, 45, 55, 64, 126, 154 |
| BslFI | GGGAC | 2 cut(s) | 181, 569 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 364, 601, 634 |
| BsmFI | GGGAC | 2 cut(s) | 181, 569 |
| BsnI | GGCC | 7 cut(s) | 44, 54, 110, 129, 271, 605, 626 |
| Bsp143I | GATC | 2 cut(s) | 3, 676 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| BspACI | CCGC | 2 cut(s) | 19, 135 |
| BspANI | GGCC | 7 cut(s) | 44, 54, 110, 129, 271, 605, 626 |
| BspCNI | CTCAG | 4 cut(s) | 265, 286, 430, 481 |
| BspLI | GGNNCC | 3 cut(s) | 158, 238, 279 |
| BspPI | GGATC | 1 cut(s) | 671 |
| BspT107I | GGYRCC | 1 cut(s) | 156 |
| BspTI | CTTAAG | 1 cut(s) | 443 |
| BsrBI | CCGCTC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BsrFI | RCCGGY | 2 cut(s) | 32, 153 |
| BssAI | RCCGGY | 2 cut(s) | 32, 153 |
| BssECI | CCNNGG | 2 cut(s) | 7, 364 |
| BssMI | GATC | 2 cut(s) | 3, 676 |
| BssNI | GRCGYC | 1 cut(s) | 30 |
| BssT1I | CCWWGG | 1 cut(s) | 7 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 1 cut(s) | 95 |
| BstACI | GRCGYC | 1 cut(s) | 30 |
| BstAFI | CTTAAG | 1 cut(s) | 443 |
| BstDEI | CTNAG | 5 cut(s) | 252, 273, 438, 489, 575 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 362 |
| BstF5I | GGATG | 3 cut(s) | 247, 586, 643 |
| BstKTI | GATC | 2 cut(s) | 6, 679 |
| BstMBI | GATC | 2 cut(s) | 3, 676 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 60, 448 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstSFI | CTRYAG | 1 cut(s) | 91 |
| Bsu36I | CCTNAGG | 2 cut(s) | 252, 273 |
| BsuRI | GGCC | 7 cut(s) | 44, 54, 110, 129, 271, 605, 626 |
| BtsCI | GGATG | 3 cut(s) | 247, 586, 643 |
| Cfr10I | RCCGGY | 2 cut(s) | 32, 153 |
| Cfr13I | GGNCC | 5 cut(s) | 108, 236, 592, 604, 625 |
| CseI | GACGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 1 cut(s) | 458 |
| CspAI | ACCGGT | 1 cut(s) | 153 |
| CviAII | CATG | 4 cut(s) | 475, 620, 629, 674 |
| CviQI | GTAC | 1 cut(s) | 458 |
| DdeI | CTNAG | 5 cut(s) | 252, 273, 438, 489, 575 |
| DpnI | GATC | 2 cut(s) | 5, 678 |
| DpnII | GATC | 2 cut(s) | 3, 676 |
| EaeI | YGGCCR | 3 cut(s) | 42, 52, 127 |
| Eco130I | CCWWGG | 1 cut(s) | 7 |
| Eco147I | AGGCCT | 1 cut(s) | 271 |
| Eco32I | GATATC | 1 cut(s) | 486 |
| Eco47I | GGWCC | 2 cut(s) | 236, 592 |
| Eco81I | CCTNAGG | 2 cut(s) | 252, 273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 362 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoRV | GATATC | 1 cut(s) | 486 |
| EcoT14I | CCWWGG | 1 cut(s) | 7 |
| ErhI | CCWWGG | 1 cut(s) | 7 |
| FaeI | CATG | 4 cut(s) | 478, 623, 632, 677 |
| FaiI | YATR | 7 cut(s) | 199, 339, 434, 476, 621, 630, 675 |
| FaqI | GGGAC | 2 cut(s) | 181, 569 |
| FatI | CATG | 4 cut(s) | 474, 619, 628, 673 |
| FokI | GGATG | 3 cut(s) | 234, 593, 650 |
| FspBI | CTAG | 1 cut(s) | 177 |
| HaeIII | GGCC | 7 cut(s) | 44, 54, 110, 129, 271, 605, 626 |
| HapII | CCGG | 6 cut(s) | 33, 45, 55, 64, 126, 154 |
| HgaI | GACGC | 1 cut(s) | 38 |
| Hin1I | GRCGYC | 1 cut(s) | 30 |
| Hin1II | CATG | 4 cut(s) | 478, 623, 632, 677 |
| HincII | GTYRAC | 1 cut(s) | 413 |
| HindII | GTYRAC | 1 cut(s) | 413 |
| HindIII | AAGCTT | 1 cut(s) | 500 |
| HinfI | GANTC | 2 cut(s) | 58, 536 |
| HpaII | CCGG | 6 cut(s) | 33, 45, 55, 64, 126, 154 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 3 cut(s) | 236, 413, 469 |
| Hpy188I | TCNGA | 3 cut(s) | 216, 267, 490 |
| Hpy8I | GTNNAC | 3 cut(s) | 236, 413, 469 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 76 |
| HpyAV | CCTTC | 5 cut(s) | 34, 342, 421, 595, 604 |
| HpyCH4III | ACNGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 1 cut(s) | 542 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 60, 448 |
| HpyF3I | CTNAG | 5 cut(s) | 252, 273, 438, 489, 575 |
| Hsp92I | GRCGYC | 1 cut(s) | 30 |
| Hsp92II | CATG | 4 cut(s) | 478, 623, 632, 677 |
| Kzo9I | GATC | 2 cut(s) | 3, 676 |
| LmnI | GCTCC | 2 cut(s) | 26, 298 |
| LweI | GCATC | 2 cut(s) | 103, 336 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MaeIII | GTNAC | 1 cut(s) | 419 |
| MalI | GATC | 2 cut(s) | 5, 678 |
| MbiI | CCGCTC | 1 cut(s) | 21 |
| MboI | GATC | 2 cut(s) | 3, 676 |
| MluCI | AATT | 2 cut(s) | 304, 385 |
| MlyI | GAGTC | 1 cut(s) | 545 |
| MseI | TTAA | 1 cut(s) | 444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| MspCI | CTTAAG | 1 cut(s) | 443 |
| MspI | CCGG | 6 cut(s) | 33, 45, 55, 64, 126, 154 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 60, 448 |
| NdeII | GATC | 2 cut(s) | 3, 676 |
| NlaIII | CATG | 4 cut(s) | 478, 623, 632, 677 |
| NlaIV | GGNNCC | 3 cut(s) | 158, 238, 279 |
| PceI | AGGCCT | 1 cut(s) | 271 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| PinAI | ACCGGT | 1 cut(s) | 153 |
| PleI | GAGTC | 1 cut(s) | 544 |
| PpsI | GAGTC | 1 cut(s) | 544 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 3 cut(s) | 158, 238, 279 |
| PspPI | GGNCC | 5 cut(s) | 108, 236, 592, 604, 625 |
| RsaI | GTAC | 1 cut(s) | 459 |
| RsaNI | GTAC | 1 cut(s) | 458 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SaqAI | TTAA | 1 cut(s) | 444 |
| Sau3AI | GATC | 2 cut(s) | 3, 676 |
| Sau96I | GGNCC | 5 cut(s) | 108, 236, 592, 604, 625 |
| SchI | GAGTC | 1 cut(s) | 545 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SfaNI | GCATC | 2 cut(s) | 103, 336 |
| SfcI | CTRYAG | 1 cut(s) | 91 |
| SgrAI | CRCCGGYG | 1 cut(s) | 153 |
| SinI | GGWCC | 2 cut(s) | 236, 592 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 2 cut(s) | 393, 443 |
| SmoI | CTYRAG | 2 cut(s) | 393, 443 |
| Sse9I | AATT | 2 cut(s) | 304, 385 |
| SseBI | AGGCCT | 1 cut(s) | 271 |
| SsiI | CCGC | 2 cut(s) | 19, 135 |
| SspMI | CTAG | 1 cut(s) | 177 |
| StuI | AGGCCT | 1 cut(s) | 271 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| StyI | CCWWGG | 1 cut(s) | 7 |
| TaaI | ACNGT | 1 cut(s) | 95 |
| TaqI | TCGA | 2 cut(s) | 27, 71 |
| TasI | AATT | 2 cut(s) | 304, 385 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| Tru1I | TTAA | 1 cut(s) | 444 |
| Tru9I | TTAA | 1 cut(s) | 444 |
| TspDTI | ATGAA | 1 cut(s) | 463 |
| TspGWI | ACGGA | 1 cut(s) | 185 |
| Vha464I | CTTAAG | 1 cut(s) | 443 |
| VpaK11BI | GGWCC | 2 cut(s) | 236, 592 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 362 |
| XapI | RAATTY | 1 cut(s) | 385 |
| XspI | CTAG | 1 cut(s) | 177 |