transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 81 | 7.2e-14 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 146 - 243 | 2.4e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 170 - 273 | 9.9e-38 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 633 |
| Acc36I | ACCTGC | 1 cut(s) | 338 |
| AccB1I | GGYRCC | 2 cut(s) | 487, 499 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1675 |
| AccBSI | CCGCTC | 1 cut(s) | 463 |
| AccII | CGCG | 1 cut(s) | 784 |
| AccIII | TCCGGA | 1 cut(s) | 505 |
| AciI | CCGC | 6 cut(s) | 463, 743, 782, 1135, 1310, 1340 |
| AclI | AACGTT | 1 cut(s) | 855 |
| AclWI | GGATC | 3 cut(s) | 853, 890, 903 |
| AcoI | YGGCCR | 3 cut(s) | 903, 1341, 1477 |
| AcsI | RAATTY | 3 cut(s) | 149, 989, 1616 |
| AcyI | GRCGYC | 2 cut(s) | 500, 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 1675 |
| AfaI | GTAC | 3 cut(s) | 31, 50, 1259 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 977, 1675 |
| AjnI | CCWGG | 2 cut(s) | 25, 1519 |
| AleI | CACNNNNGTG | 1 cut(s) | 314 |
| AluBI | AGCT | 8 cut(s) | 333, 389, 1040, 1114, 1268, 1301, 1528, 1613 |
| AluI | AGCT | 8 cut(s) | 333, 389, 1040, 1114, 1268, 1301, 1528, 1613 |
| Alw21I | GWGCWC | 2 cut(s) | 234, 570 |
| Alw26I | GTCTC | 2 cut(s) | 576, 1690 |
| AlwI | GGATC | 3 cut(s) | 853, 890, 903 |
| Aor13HI | TCCGGA | 1 cut(s) | 505 |
| AoxI | GGCC | 3 cut(s) | 903, 1341, 1477 |
| ApeKI | GCWGC | 1 cut(s) | 589 |
| ApoI | RAATTY | 3 cut(s) | 149, 989, 1616 |
| AspLEI | GCGC | 2 cut(s) | 502, 634 |
| AspS9I | GGNCC | 1 cut(s) | 1547 |
| AsuC2I | CCSGG | 1 cut(s) | 923 |
| AsuHPI | GGTGA | 4 cut(s) | 128, 1079, 1233, 1675 |
| AsuII | TTCGAA | 2 cut(s) | 328, 1456 |
| AvaII | GGWCC | 1 cut(s) | 1547 |
| BalI | TGGCCA | 1 cut(s) | 905 |
| BamHI | GGATCC | 1 cut(s) | 895 |
| BanI | GGYRCC | 2 cut(s) | 487, 499 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 234, 570 |
| BbvI | GCAGC | 1 cut(s) | 601 |
| BccI | CCATC | 4 cut(s) | 311, 608, 914, 998 |
| BceAI | ACGGC | 6 cut(s) | 539, 577, 656, 1144, 1276, 1394 |
| BciT130I | CCWGG | 2 cut(s) | 27, 1521 |
| BcnI | CCSGG | 1 cut(s) | 923 |
| BcoDI | GTCTC | 2 cut(s) | 576, 1690 |
| BfaI | CTAG | 3 cut(s) | 252, 1503, 1536 |
| BfoI | RGCGCY | 1 cut(s) | 503 |
| BfuAI | ACCTGC | 1 cut(s) | 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 560 |
| BisI | GCNGC | 4 cut(s) | 590, 744, 782, 1341 |
| BlsI | GCNGC | 4 cut(s) | 591, 745, 783, 1342 |
| Bme1390I | CCNGG | 3 cut(s) | 27, 923, 1521 |
| Bme18I | GGWCC | 1 cut(s) | 1547 |
| BmgT120I | GGNCC | 1 cut(s) | 1547 |
| BmiI | GGNNCC | 5 cut(s) | 489, 501, 897, 1012, 1178 |
| BmrFI | CCNGG | 3 cut(s) | 27, 923, 1521 |
| BmsI | GCATC | 7 cut(s) | 32, 118, 427, 619, 763, 1183, 1327 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1670, 1702 |
| BpmI | CTGGAG | 1 cut(s) | 9 |
| Bpu10I | CCTNAGC | 2 cut(s) | 158, 872 |
| Bpu14I | TTCGAA | 2 cut(s) | 328, 1456 |
| BpuEI | CTTGAG | 1 cut(s) | 418 |
| BpuMI | CCSGG | 1 cut(s) | 923 |
| Bsa29I | ATCGAT | 1 cut(s) | 1636 |
| BsaAI | YACGTR | 1 cut(s) | 1166 |
| BsaHI | GRCGYC | 2 cut(s) | 500, 540 |
| BsaJI | CCNNGG | 5 cut(s) | 555, 900, 971, 1230, 1431 |
| BsaWI | WCCGGW | 1 cut(s) | 505 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 977, 1675 |
| Bse118I | RCCGGY | 1 cut(s) | 876 |
| Bse3DI | GCAATG | 1 cut(s) | 25 |
| BseAI | TCCGGA | 1 cut(s) | 505 |
| BseBI | CCWGG | 2 cut(s) | 27, 1521 |
| BseCI | ATCGAT | 1 cut(s) | 1636 |
| BseDI | CCNNGG | 5 cut(s) | 555, 900, 971, 1230, 1431 |
| BseGI | GGATG | 7 cut(s) | 103, 303, 328, 778, 906, 1242, 1455 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 977, 1675 |
| BseMI | GCAATG | 1 cut(s) | 25 |
| BseMII | CTCAG | 2 cut(s) | 54, 558 |
| BseRI | GAGGAG | 1 cut(s) | 1682 |
| BseX3I | CGGCCG | 1 cut(s) | 1341 |
| BseXI | GCAGC | 1 cut(s) | 601 |
| BsgI | GTGCAG | 1 cut(s) | 1602 |
| Bsh1236I | CGCG | 1 cut(s) | 784 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1344 |
| BshFI | GGCC | 3 cut(s) | 905, 1343, 1479 |
| BshNI | GGYRCC | 2 cut(s) | 487, 499 |
| BshVI | ATCGAT | 1 cut(s) | 1636 |
| BsiEI | CGRYCG | 1 cut(s) | 1344 |
| BsiHKAI | GWGCWC | 2 cut(s) | 234, 570 |
| BsiSI | CCGG | 4 cut(s) | 506, 877, 923, 1344 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 977, 1675 |
| BsmAI | GTCTC | 2 cut(s) | 576, 1690 |
| BsmI | GAATGC | 5 cut(s) | 449, 920, 987, 1217, 1436 |
| BsnI | GGCC | 3 cut(s) | 905, 1343, 1479 |
| Bsp119I | TTCGAA | 2 cut(s) | 328, 1456 |
| Bsp1286I | GDGCHC | 2 cut(s) | 234, 570 |
| Bsp13I | TCCGGA | 1 cut(s) | 505 |
| Bsp143I | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| BspACI | CCGC | 6 cut(s) | 463, 743, 782, 1135, 1310, 1340 |
| BspANI | GGCC | 3 cut(s) | 905, 1343, 1479 |
| BspCNI | CTCAG | 2 cut(s) | 55, 557 |
| BspDI | ATCGAT | 1 cut(s) | 1636 |
| BspEI | TCCGGA | 1 cut(s) | 505 |
| BspFNI | CGCG | 1 cut(s) | 784 |
| BspHI | TCATGA | 1 cut(s) | 1587 |
| BspLI | GGNNCC | 5 cut(s) | 489, 501, 897, 1012, 1178 |
| BspMI | ACCTGC | 1 cut(s) | 338 |
| BspPI | GGATC | 3 cut(s) | 853, 890, 903 |
| BspT104I | TTCGAA | 2 cut(s) | 328, 1456 |
| BspT107I | GGYRCC | 2 cut(s) | 487, 499 |
| BsrBI | CCGCTC | 1 cut(s) | 463 |
| BsrDI | GCAATG | 1 cut(s) | 25 |
| BsrFI | RCCGGY | 1 cut(s) | 876 |
| BssAI | RCCGGY | 1 cut(s) | 876 |
| BssECI | CCNNGG | 5 cut(s) | 555, 900, 971, 1230, 1431 |
| BssMI | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| BssNI | GRCGYC | 2 cut(s) | 500, 540 |
| BssT1I | CCWWGG | 4 cut(s) | 900, 971, 1230, 1431 |
| Bst2UI | CCWGG | 2 cut(s) | 27, 1521 |
| Bst4CI | ACNGT | 2 cut(s) | 1245, 1675 |
| Bst6I | CTCTTC | 3 cut(s) | 574, 941, 1142 |
| BstACI | GRCGYC | 2 cut(s) | 500, 540 |
| BstBAI | YACGTR | 1 cut(s) | 1166 |
| BstBI | TTCGAA | 2 cut(s) | 328, 1456 |
| BstC8I | GCNNGC | 1 cut(s) | 1526 |
| BstDEI | CTNAG | 8 cut(s) | 63, 78, 158, 276, 544, 872, 1115, 1508 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 7 cut(s) | 103, 303, 328, 778, 906, 1242, 1455 |
| BstFNI | CGCG | 1 cut(s) | 784 |
| BstH2I | RGCGCY | 1 cut(s) | 503 |
| BstHHI | GCGC | 2 cut(s) | 502, 634 |
| BstKTI | GATC | 5 cut(s) | 495, 678, 848, 898, 1416 |
| BstMAI | GTCTC | 2 cut(s) | 576, 1690 |
| BstMBI | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| BstMCI | CGRYCG | 1 cut(s) | 1344 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 560, 1111, 1202, 1307 |
| BstNI | CCWGG | 2 cut(s) | 27, 1521 |
| BstNSI | RCATGY | 3 cut(s) | 49, 135, 347 |
| BstSCI | CCNGG | 3 cut(s) | 25, 921, 1519 |
| BstUI | CGCG | 1 cut(s) | 784 |
| BstV1I | GCAGC | 1 cut(s) | 601 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BstX2I | RGATCY | 1 cut(s) | 895 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1100 |
| BstYI | RGATCY | 1 cut(s) | 895 |
| BstZI | CGGCCG | 1 cut(s) | 1341 |
| Bsu15I | ATCGAT | 1 cut(s) | 1636 |
| BsuRI | GGCC | 3 cut(s) | 905, 1343, 1479 |
| BsuTUI | ATCGAT | 1 cut(s) | 1636 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsCI | GGATG | 7 cut(s) | 103, 303, 328, 778, 906, 1242, 1455 |
| BtsIMutI | CAGTG | 1 cut(s) | 1006 |
| BveI | ACCTGC | 1 cut(s) | 338 |
| Cac8I | GCNNGC | 1 cut(s) | 1526 |
| CciI | TCATGA | 1 cut(s) | 1587 |
| CfoI | GCGC | 2 cut(s) | 502, 634 |
| Cfr10I | RCCGGY | 1 cut(s) | 876 |
| Cfr13I | GGNCC | 1 cut(s) | 1547 |
| ClaI | ATCGAT | 1 cut(s) | 1636 |
| CseI | GACGC | 3 cut(s) | 281, 548, 628 |
| Csp6I | GTAC | 3 cut(s) | 30, 49, 1258 |
| CviQI | GTAC | 3 cut(s) | 30, 49, 1258 |
| DdeI | CTNAG | 8 cut(s) | 63, 78, 158, 276, 544, 872, 1115, 1508 |
| DinI | GGCGCC | 1 cut(s) | 501 |
| DpnI | GATC | 5 cut(s) | 494, 677, 847, 897, 1415 |
| DpnII | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| DraIII | CACNNNGTG | 1 cut(s) | 1675 |
| EaeI | YGGCCR | 3 cut(s) | 903, 1341, 1477 |
| EagI | CGGCCG | 1 cut(s) | 1341 |
| Eam1104I | CTCTTC | 3 cut(s) | 574, 941, 1142 |
| EarI | CTCTTC | 3 cut(s) | 574, 941, 1142 |
| EclXI | CGGCCG | 1 cut(s) | 1341 |
| Eco130I | CCWWGG | 4 cut(s) | 900, 971, 1230, 1431 |
| Eco47I | GGWCC | 1 cut(s) | 1547 |
| Eco52I | CGGCCG | 1 cut(s) | 1341 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1547 |
| EcoRII | CCWGG | 2 cut(s) | 25, 1519 |
| EcoT14I | CCWWGG | 4 cut(s) | 900, 971, 1230, 1431 |
| EcoT22I | ATGCAT | 2 cut(s) | 47, 133 |
| EgeI | GGCGCC | 1 cut(s) | 501 |
| EheI | GGCGCC | 1 cut(s) | 501 |
| ErhI | CCWWGG | 4 cut(s) | 900, 971, 1230, 1431 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 651, 683, 955, 987, 1098, 1130, 1451, 1483 |
| Fnu4HI | GCNGC | 4 cut(s) | 590, 744, 782, 1341 |
| FokI | GGATG | 7 cut(s) | 110, 290, 335, 785, 893, 1249, 1462 |
| Fsp4HI | GCNGC | 4 cut(s) | 590, 744, 782, 1341 |
| FspBI | CTAG | 3 cut(s) | 252, 1503, 1536 |
| FspI | TGCGCA | 1 cut(s) | 633 |
| GlaI | GCGC | 2 cut(s) | 501, 633 |
| GluI | GCNGC | 4 cut(s) | 590, 744, 782, 1341 |
| GsuI | CTGGAG | 1 cut(s) | 9 |
| HaeII | RGCGCY | 1 cut(s) | 503 |
| HaeIII | GGCC | 3 cut(s) | 905, 1343, 1479 |
| HapII | CCGG | 4 cut(s) | 506, 877, 923, 1344 |
| HgaI | GACGC | 3 cut(s) | 281, 548, 628 |
| HhaI | GCGC | 2 cut(s) | 502, 634 |
| Hin1I | GRCGYC | 2 cut(s) | 500, 540 |
| Hin6I | GCGC | 2 cut(s) | 500, 632 |
| HinP1I | GCGC | 2 cut(s) | 500, 632 |
| HincII | GTYRAC | 2 cut(s) | 480, 762 |
| HindII | GTYRAC | 2 cut(s) | 480, 762 |
| HindIII | AAGCTT | 2 cut(s) | 331, 1266 |
| HinfI | GANTC | 4 cut(s) | 890, 1059, 1403, 1453 |
| HpaII | CCGG | 4 cut(s) | 506, 877, 923, 1344 |
| HphI | GGTGA | 4 cut(s) | 128, 1079, 1233, 1675 |
| Hpy166II | GTNNAC | 5 cut(s) | 480, 762, 1258, 1373, 1666 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 547, 572, 618, 850, 895, 1212, 1317 |
| Hpy188III | TCNNGA | 4 cut(s) | 506, 1387, 1503, 1588 |
| Hpy8I | GTNNAC | 5 cut(s) | 480, 762, 1258, 1373, 1666 |
| Hpy99I | CGWCG | 1 cut(s) | 363 |
| HpyAV | CCTTC | 3 cut(s) | 532, 763, 1584 |
| HpyCH4III | ACNGT | 2 cut(s) | 1245, 1675 |
| HpyCH4IV | ACGT | 4 cut(s) | 32, 855, 1165, 1531 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 560, 1111, 1202, 1307 |
| HpyF3I | CTNAG | 8 cut(s) | 63, 78, 158, 276, 544, 872, 1115, 1508 |
| HpySE526I | ACGT | 4 cut(s) | 32, 855, 1165, 1531 |
| Hsp92I | GRCGYC | 2 cut(s) | 500, 540 |
| HspAI | GCGC | 2 cut(s) | 500, 632 |
| KasI | GGCGCC | 1 cut(s) | 499 |
| Kpn2I | TCCGGA | 1 cut(s) | 505 |
| Kzo9I | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| LmnI | GCTCC | 4 cut(s) | 28, 1111, 1176, 1610 |
| Lsp1109I | GCAGC | 1 cut(s) | 601 |
| LweI | GCATC | 7 cut(s) | 32, 118, 427, 619, 763, 1183, 1327 |
| MaeI | CTAG | 3 cut(s) | 252, 1503, 1536 |
| MaeII | ACGT | 4 cut(s) | 32, 855, 1165, 1531 |
| MalI | GATC | 5 cut(s) | 494, 677, 847, 897, 1415 |
| MbiI | CCGCTC | 1 cut(s) | 463 |
| MboI | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| MboII | GAAGA | 7 cut(s) | 131, 481, 591, 928, 1060, 1159, 1391 |
| MfeI | CAATTG | 1 cut(s) | 1032 |
| MflI | RGATCY | 1 cut(s) | 895 |
| MhlI | GDGCHC | 2 cut(s) | 234, 570 |
| MlsI | TGGCCA | 1 cut(s) | 905 |
| MluCI | AATT | 6 cut(s) | 149, 190, 989, 1032, 1498, 1616 |
| MluNI | TGGCCA | 1 cut(s) | 905 |
| Mly113I | GGCGCC | 1 cut(s) | 500 |
| MlyI | GAGTC | 1 cut(s) | 884 |
| MmeI | TCCRAC | 1 cut(s) | 1269 |
| Mox20I | TGGCCA | 1 cut(s) | 905 |
| Mph1103I | ATGCAT | 2 cut(s) | 47, 133 |
| MroI | TCCGGA | 1 cut(s) | 505 |
| MscI | TGGCCA | 1 cut(s) | 905 |
| MseI | TTAA | 8 cut(s) | 189, 216, 1131, 1323, 1497, 1593, 1626, 1640 |
| MslI | CAYNNNNRTG | 2 cut(s) | 314, 435 |
| Msp20I | TGGCCA | 1 cut(s) | 905 |
| MspI | CCGG | 4 cut(s) | 506, 877, 923, 1344 |
| MspR9I | CCNGG | 3 cut(s) | 27, 923, 1521 |
| MunI | CAATTG | 1 cut(s) | 1032 |
| Mva1269I | GAATGC | 5 cut(s) | 449, 920, 987, 1217, 1436 |
| MvaI | CCWGG | 2 cut(s) | 27, 1521 |
| MvnI | CGCG | 1 cut(s) | 784 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 560, 1111, 1202, 1307 |
| NarI | GGCGCC | 1 cut(s) | 500 |
| NciI | CCSGG | 1 cut(s) | 923 |
| NdeII | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| NlaIV | GGNNCC | 5 cut(s) | 489, 501, 897, 1012, 1178 |
| NmuCI | GTSAC | 8 cut(s) | 203, 236, 293, 536, 887, 1161, 1239, 1271 |
| NsbI | TGCGCA | 1 cut(s) | 633 |
| NsiI | ATGCAT | 2 cut(s) | 47, 133 |
| NspI | RCATGY | 3 cut(s) | 49, 135, 347 |
| NspV | TTCGAA | 2 cut(s) | 328, 1456 |
| OliI | CACNNNNGTG | 1 cut(s) | 314 |
| PagI | TCATGA | 1 cut(s) | 1587 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 861 |
| PctI | GAATGC | 5 cut(s) | 449, 920, 987, 1217, 1436 |
| PfeI | GAWTC | 3 cut(s) | 1059, 1403, 1453 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1675 |
| PfoI | TCCNGGA | 1 cut(s) | 921 |
| PkrI | GCNGC | 4 cut(s) | 591, 745, 783, 1342 |
| PleI | GAGTC | 1 cut(s) | 884 |
| PluTI | GGCGCC | 1 cut(s) | 503 |
| PpsI | GAGTC | 1 cut(s) | 884 |
| Ppu21I | YACGTR | 1 cut(s) | 1166 |
| PpuMI | RGGWCCY | 1 cut(s) | 1547 |
| Psp1406I | AACGTT | 1 cut(s) | 855 |
| Psp5II | RGGWCCY | 1 cut(s) | 1547 |
| Psp6I | CCWGG | 2 cut(s) | 25, 1519 |
| PspGI | CCWGG | 2 cut(s) | 25, 1519 |
| PspN4I | GGNNCC | 5 cut(s) | 489, 501, 897, 1012, 1178 |
| PspPI | GGNCC | 1 cut(s) | 1547 |
| PspPPI | RGGWCCY | 1 cut(s) | 1547 |
| PsuI | RGATCY | 1 cut(s) | 895 |
| RsaI | GTAC | 3 cut(s) | 31, 50, 1259 |
| RsaNI | GTAC | 3 cut(s) | 30, 49, 1258 |
| RseI | CAYNNNNRTG | 2 cut(s) | 314, 435 |
| SaqAI | TTAA | 8 cut(s) | 189, 216, 1131, 1323, 1497, 1593, 1626, 1640 |
| SatI | GCNGC | 4 cut(s) | 590, 744, 782, 1341 |
| Sau3AI | GATC | 5 cut(s) | 492, 675, 845, 895, 1413 |
| Sau96I | GGNCC | 1 cut(s) | 1547 |
| SchI | GAGTC | 1 cut(s) | 884 |
| ScrFI | CCNGG | 3 cut(s) | 27, 923, 1521 |
| SduI | GDGCHC | 2 cut(s) | 234, 570 |
| SfaNI | GCATC | 7 cut(s) | 32, 118, 427, 619, 763, 1183, 1327 |
| SfoI | GGCGCC | 1 cut(s) | 501 |
| SfuI | TTCGAA | 2 cut(s) | 328, 1456 |
| SinI | GGWCC | 1 cut(s) | 1547 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 314, 435 |
| SmlI | CTYRAG | 1 cut(s) | 397 |
| SmoI | CTYRAG | 1 cut(s) | 397 |
| Sse9I | AATT | 6 cut(s) | 149, 190, 989, 1032, 1498, 1616 |
| SsiI | CCGC | 6 cut(s) | 463, 743, 782, 1135, 1310, 1340 |
| SspDI | GGCGCC | 1 cut(s) | 499 |
| SspMI | CTAG | 3 cut(s) | 252, 1503, 1536 |
| StyD4I | CCNGG | 3 cut(s) | 25, 921, 1519 |
| StyI | CCWWGG | 4 cut(s) | 900, 971, 1230, 1431 |
| TaaI | ACNGT | 2 cut(s) | 1245, 1675 |
| TaiI | ACGT | 4 cut(s) | 35, 858, 1168, 1534 |
| TaqII | GACCGA | 1 cut(s) | 224 |
| TasI | AATT | 6 cut(s) | 149, 190, 989, 1032, 1498, 1616 |
| TauI | GCSGC | 3 cut(s) | 746, 784, 1343 |
| TfiI | GAWTC | 3 cut(s) | 1059, 1403, 1453 |
| Tru1I | TTAA | 8 cut(s) | 189, 216, 1131, 1323, 1497, 1593, 1626, 1640 |
| Tru9I | TTAA | 8 cut(s) | 189, 216, 1131, 1323, 1497, 1593, 1626, 1640 |
| TscAI | CASTG | 1 cut(s) | 1006 |
| TseFI | GTSAC | 8 cut(s) | 203, 236, 293, 536, 887, 1161, 1239, 1271 |
| TseI | GCWGC | 1 cut(s) | 589 |
| Tsp45I | GTSAC | 8 cut(s) | 203, 236, 293, 536, 887, 1161, 1239, 1271 |
| TspDTI | ATGAA | 3 cut(s) | 58, 199, 1061 |
| TspRI | CASTG | 1 cut(s) | 1006 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1675 |
| VpaK11BI | GGWCC | 1 cut(s) | 1547 |
| XapI | RAATTY | 3 cut(s) | 149, 989, 1616 |
| XbaI | TCTAGA | 1 cut(s) | 1502 |
| XceI | RCATGY | 3 cut(s) | 49, 135, 347 |
| XspI | CTAG | 3 cut(s) | 252, 1503, 1536 |
| Zsp2I | ATGCAT | 2 cut(s) | 47, 133 |