Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 82 - 174 | 5.1e-21 | Retrotransposon gag protein |
| RVT_1 | PF00078 | 608 - 763 | 5e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 828 - 925 | 2.6e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 852 - 955 | 1.7e-38 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 589 |
| AatII | GACGTC | 3 cut(s) | 1233, 1325, 2531 |
| Acc36I | ACCTGC | 1 cut(s) | 589 |
| AccB1I | GGYRCC | 1 cut(s) | 1807 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 279, 1087 |
| AccBSI | CCGCTC | 1 cut(s) | 218 |
| AccI | GTMKAC | 2 cut(s) | 570, 2328 |
| AciI | CCGC | 4 cut(s) | 78, 218, 1058, 3401 |
| AclI | AACGTT | 3 cut(s) | 134, 3749, 3789 |
| AclWI | GGATC | 7 cut(s) | 809, 1068, 1202, 1215, 2839, 2852, 3429 |
| AcoI | YGGCCR | 2 cut(s) | 2386, 3721 |
| AcsI | RAATTY | 3 cut(s) | 179, 1541, 2738 |
| AcuI | CTGAAG | 3 cut(s) | 606, 1155, 3222 |
| AcvI | CACGTG | 1 cut(s) | 3065 |
| AcyI | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| AfaI | GTAC | 7 cut(s) | 1527, 1561, 1758, 2077, 2761, 2931, 3777 |
| AfeI | AGCGCT | 1 cut(s) | 1919 |
| AflII | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| AflIII | ACRYGT | 2 cut(s) | 201, 721 |
| AjiI | CACGTC | 1 cut(s) | 2869 |
| AjnI | CCWGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 298, 330 |
| AleI | CACNNNNGTG | 1 cut(s) | 2360 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3561, 3593 |
| Alw21I | GWGCWC | 3 cut(s) | 2712, 3070, 3387 |
| Alw26I | GTCTC | 8 cut(s) | 521, 650, 1106, 1652, 2296, 2431, 2954, 3211 |
| AlwI | GGATC | 7 cut(s) | 809, 1068, 1202, 1215, 2839, 2852, 3429 |
| Aor51HI | AGCGCT | 1 cut(s) | 1919 |
| AoxI | GGCC | 8 cut(s) | 142, 693, 1078, 1512, 1828, 2386, 2499, 3721 |
| ApeKI | GCWGC | 4 cut(s) | 425, 548, 551, 2789 |
| ApoI | RAATTY | 3 cut(s) | 179, 1541, 2738 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 45, 310, 350, 885 |
| AspLEI | GCGC | 1 cut(s) | 1920 |
| AspS9I | GGNCC | 9 cut(s) | 677, 794, 850, 870, 926, 1078, 1291, 3267, 3638 |
| AsuHPI | GGTGA | 5 cut(s) | 570, 673, 1320, 3170, 3415 |
| AsuII | TTCGAA | 2 cut(s) | 824, 3492 |
| AvaII | GGWCC | 8 cut(s) | 677, 794, 850, 870, 926, 1291, 3267, 3638 |
| AxyI | CCTNAGG | 2 cut(s) | 1149, 3801 |
| BaeGI | GKGCMC | 2 cut(s) | 740, 1812 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2751, 2784 |
| BalI | TGGCCA | 2 cut(s) | 2388, 3723 |
| BamHI | GGATCC | 2 cut(s) | 1207, 2844 |
| BanI | GGYRCC | 1 cut(s) | 1807 |
| BanII | GRGCYC | 1 cut(s) | 2712 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 504, 536 |
| BauI | CACGAG | 1 cut(s) | 1109 |
| BbrPI | CACGTG | 1 cut(s) | 3065 |
| BbsI | GAAGAC | 7 cut(s) | 92, 162, 1226, 2946, 3245, 3524, 3560 |
| Bbv12I | GWGCWC | 3 cut(s) | 2712, 3070, 3387 |
| BbvCI | CCTCAGC | 1 cut(s) | 1251 |
| BbvI | GCAGC | 4 cut(s) | 437, 535, 563, 2801 |
| BciT130I | CCWGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| BciVI | GTATCC | 1 cut(s) | 75 |
| BclI | TGATCA | 2 cut(s) | 1903, 3142 |
| BcoDI | GTCTC | 8 cut(s) | 521, 650, 1106, 1652, 2296, 2431, 2954, 3211 |
| BfmI | CTRYAG | 2 cut(s) | 549, 1849 |
| BfoI | RGCGCY | 1 cut(s) | 1921 |
| BfrI | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| BfuAI | ACCTGC | 1 cut(s) | 589 |
| BfuI | GTATCC | 1 cut(s) | 75 |
| BglII | AGATCT | 1 cut(s) | 43 |
| BisI | GCNGC | 5 cut(s) | 78, 426, 549, 552, 2790 |
| BlsI | GCNGC | 5 cut(s) | 79, 427, 550, 553, 2791 |
| Bme1390I | CCNGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| Bme18I | GGWCC | 8 cut(s) | 677, 794, 850, 870, 926, 1291, 3267, 3638 |
| BmgBI | CACGTC | 1 cut(s) | 2869 |
| BmgT120I | GGNCC | 9 cut(s) | 677, 794, 850, 870, 926, 1078, 1291, 3267, 3638 |
| BmiI | GGNNCC | 9 cut(s) | 562, 678, 795, 796, 851, 1209, 1293, 1809, 2846 |
| BmrFI | CCNGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| BmrI | ACTGGG | 1 cut(s) | 1739 |
| BmsI | GCATC | 5 cut(s) | 178, 535, 2665, 3274, 3475 |
| BmuI | ACTGGG | 1 cut(s) | 1739 |
| BpiI | GAAGAC | 7 cut(s) | 92, 162, 1226, 2946, 3245, 3524, 3560 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2360, 2392 |
| BpmI | CTGGAG | 2 cut(s) | 2055, 2535 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1251, 2322 |
| Bpu14I | TTCGAA | 2 cut(s) | 824, 3492 |
| BsaAI | YACGTR | 1 cut(s) | 3065 |
| BsaBI | GATNNNNATC | 1 cut(s) | 766 |
| BsaHI | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| BsaI | GGTCTC | 3 cut(s) | 521, 650, 2431 |
| BsaJI | CCNNGG | 8 cut(s) | 139, 525, 672, 806, 838, 1047, 2828, 3005 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 552, 582, 1564, 1594, 1764, 1794 |
| Bse1I | ACTGG | 2 cut(s) | 1120, 1745 |
| Bse21I | CCTNAGG | 2 cut(s) | 1149, 3801 |
| Bse3DI | GCAATG | 2 cut(s) | 1053, 2071 |
| Bse8I | GATNNNNATC | 1 cut(s) | 766 |
| BseBI | CCWGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| BseDI | CCNNGG | 8 cut(s) | 139, 525, 672, 806, 838, 1047, 2828, 3005 |
| BseJI | GATNNNNATC | 1 cut(s) | 766 |
| BseMI | GCAATG | 2 cut(s) | 1053, 2071 |
| BseMII | CTCAG | 7 cut(s) | 391, 1037, 1242, 1785, 1974, 2691, 3792 |
| BseNI | ACTGG | 2 cut(s) | 1120, 1745 |
| BseRI | GAGGAG | 3 cut(s) | 801, 945, 3485 |
| BseSI | GKGCMC | 2 cut(s) | 740, 1812 |
| BseXI | GCAGC | 4 cut(s) | 437, 535, 563, 2801 |
| BseYI | CCCAGC | 4 cut(s) | 355, 554, 741, 3434 |
| BsgI | GTGCAG | 1 cut(s) | 3698 |
| BshFI | GGCC | 8 cut(s) | 144, 695, 1080, 1514, 1830, 2388, 2501, 3723 |
| BshNI | GGYRCC | 1 cut(s) | 1807 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2712, 3070, 3387 |
| BslFI | GGGAC | 7 cut(s) | 690, 780, 863, 1630, 1726, 3316, 3582 |
| BsmAI | GTCTC | 8 cut(s) | 521, 650, 1106, 1652, 2296, 2431, 2954, 3211 |
| BsmBI | CGTCTC | 2 cut(s) | 1652, 2954 |
| BsmFI | GGGAC | 7 cut(s) | 690, 780, 863, 1630, 1726, 3316, 3582 |
| BsmI | GAATGC | 3 cut(s) | 1171, 1795, 3527 |
| BsnI | GGCC | 8 cut(s) | 144, 695, 1080, 1514, 1830, 2388, 2501, 3723 |
| Bso31I | GGTCTC | 3 cut(s) | 521, 650, 2431 |
| Bsp119I | TTCGAA | 2 cut(s) | 824, 3492 |
| Bsp1286I | GDGCHC | 5 cut(s) | 740, 1812, 2712, 3070, 3387 |
| Bsp19I | CCATGG | 2 cut(s) | 139, 3005 |
| BspACI | CCGC | 4 cut(s) | 78, 218, 1058, 3401 |
| BspANI | GGCC | 8 cut(s) | 144, 695, 1080, 1514, 1830, 2388, 2501, 3723 |
| BspCNI | CTCAG | 7 cut(s) | 390, 1036, 1243, 1786, 1973, 2692, 3793 |
| BspHI | TCATGA | 1 cut(s) | 1095 |
| BspLI | GGNNCC | 9 cut(s) | 562, 678, 795, 796, 851, 1209, 1293, 1809, 2846 |
| BspMAI | CTGCAG | 1 cut(s) | 553 |
| BspMI | ACCTGC | 1 cut(s) | 589 |
| BspPI | GGATC | 7 cut(s) | 809, 1068, 1202, 1215, 2839, 2852, 3429 |
| BspQI | GCTCTTC | 1 cut(s) | 586 |
| BspT104I | TTCGAA | 2 cut(s) | 824, 3492 |
| BspT107I | GGYRCC | 1 cut(s) | 1807 |
| BspTI | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| BspTNI | GGTCTC | 3 cut(s) | 521, 650, 2431 |
| BsrBI | CCGCTC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 2 cut(s) | 1053, 2071 |
| BsrI | ACTGG | 2 cut(s) | 1120, 1745 |
| BssECI | CCNNGG | 8 cut(s) | 139, 525, 672, 806, 838, 1047, 2828, 3005 |
| BssNI | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| BssSI | CACGAG | 1 cut(s) | 1109 |
| BssT1I | CCWWGG | 7 cut(s) | 139, 525, 672, 806, 1047, 2828, 3005 |
| Bst2BI | CACGAG | 1 cut(s) | 1109 |
| Bst2UI | CCWGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| Bst4CI | ACNGT | 7 cut(s) | 269, 691, 1780, 1822, 2042, 3094, 3244 |
| Bst6I | CTCTTC | 3 cut(s) | 586, 1896, 2299 |
| BstACI | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| BstAFI | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| BstBAI | YACGTR | 1 cut(s) | 3065 |
| BstBI | TTCGAA | 2 cut(s) | 824, 3492 |
| BstC8I | GCNNGC | 2 cut(s) | 405, 3198 |
| BstDSI | CCRYGG | 2 cut(s) | 139, 3005 |
| BstENI | CCTNNNNNAGG | 6 cut(s) | 78, 585, 900, 1286, 1508, 1567 |
| BstH2I | RGCGCY | 1 cut(s) | 1921 |
| BstHHI | GCGC | 1 cut(s) | 1920 |
| BstMAI | GTCTC | 8 cut(s) | 521, 650, 1106, 1652, 2296, 2431, 2954, 3211 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 77, 269, 560, 620, 692, 1962, 2606, 3293, 3398 |
| BstNI | CCWGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| BstNSI | RCATGY | 3 cut(s) | 205, 725, 952 |
| BstSCI | CCNGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| BstSFI | CTRYAG | 2 cut(s) | 549, 1849 |
| BstSLI | GKGCMC | 2 cut(s) | 740, 1812 |
| BstV1I | GCAGC | 4 cut(s) | 437, 535, 563, 2801 |
| BstV2I | GAAGAC | 7 cut(s) | 92, 162, 1226, 2946, 3245, 3524, 3560 |
| BstX2I | RGATCY | 5 cut(s) | 43, 1060, 1207, 2844, 3421 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3191 |
| BstYI | RGATCY | 5 cut(s) | 43, 1060, 1207, 2844, 3421 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1149, 3801 |
| BsuI | GTATCC | 1 cut(s) | 75 |
| BsuRI | GGCC | 8 cut(s) | 144, 695, 1080, 1514, 1830, 2388, 2501, 3723 |
| BtgI | CCRYGG | 2 cut(s) | 139, 3005 |
| BtgZI | GCGATG | 1 cut(s) | 3710 |
| BtrI | CACGTC | 1 cut(s) | 2869 |
| BtsIMutI | CAGTG | 3 cut(s) | 740, 2778, 3249 |
| BveI | ACCTGC | 1 cut(s) | 589 |
| Cac8I | GCNNGC | 2 cut(s) | 405, 3198 |
| CciI | TCATGA | 1 cut(s) | 1095 |
| CfoI | GCGC | 1 cut(s) | 1920 |
| Cfr13I | GGNCC | 9 cut(s) | 677, 794, 850, 870, 926, 1078, 1291, 3267, 3638 |
| CseI | GACGC | 2 cut(s) | 167, 2594 |
| Csp6I | GTAC | 7 cut(s) | 1526, 1560, 1757, 2076, 2760, 2930, 3776 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1820, 1855 |
| CviQI | GTAC | 7 cut(s) | 1526, 1560, 1757, 2076, 2760, 2930, 3776 |
| EaeI | YGGCCR | 2 cut(s) | 2386, 3721 |
| Eam1104I | CTCTTC | 3 cut(s) | 586, 1896, 2299 |
| EarI | CTCTTC | 3 cut(s) | 586, 1896, 2299 |
| Ecl136II | GAGCTC | 1 cut(s) | 2710 |
| Eco130I | CCWWGG | 7 cut(s) | 139, 525, 672, 806, 1047, 2828, 3005 |
| Eco147I | AGGCCT | 1 cut(s) | 2501 |
| Eco24I | GRGCYC | 1 cut(s) | 2712 |
| Eco31I | GGTCTC | 3 cut(s) | 521, 650, 2431 |
| Eco47I | GGWCC | 8 cut(s) | 677, 794, 850, 870, 926, 1291, 3267, 3638 |
| Eco47III | AGCGCT | 1 cut(s) | 1919 |
| Eco53kI | GAGCTC | 1 cut(s) | 2710 |
| Eco57I | CTGAAG | 3 cut(s) | 606, 1155, 3222 |
| Eco72I | CACGTG | 1 cut(s) | 3065 |
| Eco81I | CCTNAGG | 2 cut(s) | 1149, 3801 |
| EcoICRI | GAGCTC | 1 cut(s) | 2710 |
| EcoNI | CCTNNNNNAGG | 6 cut(s) | 78, 585, 900, 1286, 1508, 1567 |
| EcoO109I | RGGNCCY | 4 cut(s) | 677, 794, 926, 1291 |
| EcoRII | CCWGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| EcoT14I | CCWWGG | 7 cut(s) | 139, 525, 672, 806, 1047, 2828, 3005 |
| EcoT38I | GRGCYC | 1 cut(s) | 2712 |
| ErhI | CCWWGG | 7 cut(s) | 139, 525, 672, 806, 1047, 2828, 3005 |
| Esp3I | CGTCTC | 2 cut(s) | 1652, 2954 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 30, 62, 1266, 1298, 2697, 2729 |
| FaqI | GGGAC | 7 cut(s) | 690, 780, 863, 1630, 1726, 3316, 3582 |
| FbaI | TGATCA | 2 cut(s) | 1903, 3142 |
| FblI | GTMKAC | 2 cut(s) | 570, 2328 |
| Fnu4HI | GCNGC | 5 cut(s) | 78, 426, 549, 552, 2790 |
| FriOI | GRGCYC | 1 cut(s) | 2712 |
| Fsp4HI | GCNGC | 5 cut(s) | 78, 426, 549, 552, 2790 |
| GlaI | GCGC | 1 cut(s) | 1919 |
| GluI | GCNGC | 5 cut(s) | 78, 426, 549, 552, 2790 |
| GsaI | CCCAGC | 4 cut(s) | 359, 558, 745, 3438 |
| GsuI | CTGGAG | 2 cut(s) | 2055, 2535 |
| HaeII | RGCGCY | 1 cut(s) | 1921 |
| HaeIII | GGCC | 8 cut(s) | 144, 695, 1080, 1514, 1830, 2388, 2501, 3723 |
| HgaI | GACGC | 2 cut(s) | 167, 2594 |
| HhaI | GCGC | 1 cut(s) | 1920 |
| Hin1I | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| Hin6I | GCGC | 1 cut(s) | 1918 |
| HinP1I | GCGC | 1 cut(s) | 1918 |
| HindIII | AAGCTT | 1 cut(s) | 3390 |
| HphI | GGTGA | 5 cut(s) | 570, 673, 1320, 3170, 3415 |
| Hpy166II | GTNNAC | 9 cut(s) | 571, 870, 1090, 2329, 2932, 3002, 3247, 3617, 3692 |
| Hpy188I | TCNGA | 9 cut(s) | 380, 891, 1347, 1726, 1974, 2110, 2593, 3142, 3219 |
| Hpy8I | GTNNAC | 9 cut(s) | 571, 870, 1090, 2329, 2932, 3002, 3247, 3617, 3692 |
| Hpy99I | CGWCG | 2 cut(s) | 1647, 2046 |
| HpyCH4III | ACNGT | 7 cut(s) | 269, 691, 1780, 1822, 2042, 3094, 3244 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 77, 269, 560, 620, 692, 1962, 2606, 3293, 3398 |
| Hsp92I | GRCGYC | 4 cut(s) | 1230, 1322, 2528, 2586 |
| HspAI | GCGC | 1 cut(s) | 1918 |
| KflI | GGGWCCC | 1 cut(s) | 794 |
| Ksp22I | TGATCA | 2 cut(s) | 1903, 3142 |
| LguI | GCTCTTC | 1 cut(s) | 586 |
| LmnI | GCTCC | 8 cut(s) | 215, 560, 1128, 2074, 2606, 2715, 3671, 3757 |
| Lsp1109I | GCAGC | 4 cut(s) | 437, 535, 563, 2801 |
| LweI | GCATC | 5 cut(s) | 178, 535, 2665, 3274, 3475 |
| MbiI | CCGCTC | 1 cut(s) | 218 |
| MfeI | CAATTG | 2 cut(s) | 3146, 3455 |
| MflI | RGATCY | 5 cut(s) | 43, 1060, 1207, 2844, 3421 |
| MhlI | GDGCHC | 5 cut(s) | 740, 1812, 2712, 3070, 3387 |
| MlsI | TGGCCA | 2 cut(s) | 2388, 3723 |
| MluNI | TGGCCA | 2 cut(s) | 2388, 3723 |
| MlyI | GAGTC | 4 cut(s) | 1721, 2052, 2659, 2929 |
| MmeI | TCCRAC | 6 cut(s) | 74, 155, 937, 2584, 3447, 3611 |
| Mox20I | TGGCCA | 2 cut(s) | 2388, 3723 |
| MroXI | GAANNNNTTC | 4 cut(s) | 45, 310, 350, 885 |
| MscI | TGGCCA | 2 cut(s) | 2388, 3723 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2360, 3326 |
| Msp20I | TGGCCA | 2 cut(s) | 2388, 3723 |
| MspA1I | CMGCKG | 1 cut(s) | 554 |
| MspCI | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| MspR9I | CCNGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| MunI | CAATTG | 2 cut(s) | 3146, 3455 |
| Mva1269I | GAATGC | 3 cut(s) | 1171, 1795, 3527 |
| MvaI | CCWGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 77, 269, 560, 620, 692, 1962, 2606, 3293, 3398 |
| NcoI | CCATGG | 2 cut(s) | 139, 3005 |
| NlaIV | GGNNCC | 9 cut(s) | 562, 678, 795, 796, 851, 1209, 1293, 1809, 2846 |
| NmuCI | GTSAC | 5 cut(s) | 576, 1454, 1774, 2582, 3060 |
| NspI | RCATGY | 3 cut(s) | 205, 725, 952 |
| NspV | TTCGAA | 2 cut(s) | 824, 3492 |
| OliI | CACNNNNGTG | 1 cut(s) | 2360 |
| PagI | TCATGA | 1 cut(s) | 1095 |
| PaqCI | CACCTGC | 1 cut(s) | 589 |
| PceI | AGGCCT | 1 cut(s) | 2501 |
| PciI | ACATGT | 2 cut(s) | 201, 721 |
| PciSI | GCTCTTC | 1 cut(s) | 586 |
| PctI | GAATGC | 3 cut(s) | 1171, 1795, 3527 |
| PdmI | GAANNNNTTC | 4 cut(s) | 45, 310, 350, 885 |
| PfeI | GAWTC | 9 cut(s) | 416, 767, 973, 1105, 1364, 1495, 2988, 3046, 3544 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 279, 1087 |
| PkrI | GCNGC | 5 cut(s) | 79, 427, 550, 553, 2791 |
| PleI | GAGTC | 4 cut(s) | 1721, 2052, 2659, 2928 |
| PmaCI | CACGTG | 1 cut(s) | 3065 |
| PmlI | CACGTG | 1 cut(s) | 3065 |
| PpsI | GAGTC | 4 cut(s) | 1721, 2052, 2659, 2928 |
| Ppu21I | YACGTR | 1 cut(s) | 3065 |
| PpuMI | RGGWCCY | 4 cut(s) | 677, 794, 926, 1291 |
| PscI | ACATGT | 2 cut(s) | 201, 721 |
| Psp124BI | GAGCTC | 1 cut(s) | 2712 |
| Psp1406I | AACGTT | 3 cut(s) | 134, 3749, 3789 |
| Psp5II | RGGWCCY | 4 cut(s) | 677, 794, 926, 1291 |
| Psp6I | CCWGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| PspCI | CACGTG | 1 cut(s) | 3065 |
| PspFI | CCCAGC | 4 cut(s) | 355, 554, 741, 3434 |
| PspGI | CCWGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| PspN4I | GGNNCC | 9 cut(s) | 562, 678, 795, 796, 851, 1209, 1293, 1809, 2846 |
| PspPI | GGNCC | 9 cut(s) | 677, 794, 850, 870, 926, 1078, 1291, 3267, 3638 |
| PspPPI | RGGWCCY | 4 cut(s) | 677, 794, 926, 1291 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3607, 3639 |
| PstI | CTGCAG | 1 cut(s) | 553 |
| PsuI | RGATCY | 5 cut(s) | 43, 1060, 1207, 2844, 3421 |
| PvuII | CAGCTG | 1 cut(s) | 554 |
| RsaI | GTAC | 7 cut(s) | 1527, 1561, 1758, 2077, 2761, 2931, 3777 |
| RsaNI | GTAC | 7 cut(s) | 1526, 1560, 1757, 2076, 2760, 2930, 3776 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2360, 3326 |
| SacI | GAGCTC | 1 cut(s) | 2712 |
| SapI | GCTCTTC | 1 cut(s) | 586 |
| SatI | GCNGC | 5 cut(s) | 78, 426, 549, 552, 2790 |
| Sau96I | GGNCC | 9 cut(s) | 677, 794, 850, 870, 926, 1078, 1291, 3267, 3638 |
| SchI | GAGTC | 4 cut(s) | 1721, 2052, 2659, 2929 |
| ScrFI | CCNGG | 4 cut(s) | 840, 2073, 2993, 3612 |
| SduI | GDGCHC | 5 cut(s) | 740, 1812, 2712, 3070, 3387 |
| SfaNI | GCATC | 5 cut(s) | 178, 535, 2665, 3274, 3475 |
| SfcI | CTRYAG | 2 cut(s) | 549, 1849 |
| SfuI | TTCGAA | 2 cut(s) | 824, 3492 |
| SinI | GGWCC | 8 cut(s) | 677, 794, 850, 870, 926, 1291, 3267, 3638 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2360, 3326 |
| SseBI | AGGCCT | 1 cut(s) | 2501 |
| SsiI | CCGC | 4 cut(s) | 78, 218, 1058, 3401 |
| SstI | GAGCTC | 1 cut(s) | 2712 |
| StuI | AGGCCT | 1 cut(s) | 2501 |
| StyD4I | CCNGG | 4 cut(s) | 838, 2071, 2991, 3610 |
| StyI | CCWWGG | 7 cut(s) | 139, 525, 672, 806, 1047, 2828, 3005 |
| TaaI | ACNGT | 7 cut(s) | 269, 691, 1780, 1822, 2042, 3094, 3244 |
| TaqI | TCGA | 5 cut(s) | 655, 824, 2435, 3340, 3492 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 9 cut(s) | 416, 767, 973, 1105, 1364, 1495, 2988, 3046, 3544 |
| TscAI | CASTG | 3 cut(s) | 740, 2785, 3249 |
| TseFI | GTSAC | 5 cut(s) | 576, 1454, 1774, 2582, 3060 |
| TseI | GCWGC | 4 cut(s) | 425, 548, 551, 2789 |
| Tsp45I | GTSAC | 5 cut(s) | 576, 1454, 1774, 2582, 3060 |
| TspRI | CASTG | 3 cut(s) | 740, 2785, 3249 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 279, 1087 |
| Vha464I | CTTAAG | 3 cut(s) | 1064, 2203, 3083 |
| VpaK11BI | GGWCC | 8 cut(s) | 677, 794, 850, 870, 926, 1291, 3267, 3638 |
| XagI | CCTNNNNNAGG | 6 cut(s) | 78, 585, 900, 1286, 1508, 1567 |
| XapI | RAATTY | 3 cut(s) | 179, 1541, 2738 |
| XbaI | TCTAGA | 2 cut(s) | 3038, 3424 |
| XceI | RCATGY | 3 cut(s) | 205, 725, 952 |
| XmiI | GTMKAC | 2 cut(s) | 570, 2328 |
| XmnI | GAANNNNTTC | 4 cut(s) | 45, 310, 350, 885 |
| ZraI | GACGTC | 3 cut(s) | 1231, 1323, 2529 |