transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 339 - 432 | 3.3e-21 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 71 |
| AarI | CACCTGC | 1 cut(s) | 128 |
| AatII | GACGTC | 1 cut(s) | 2038 |
| Acc36I | ACCTGC | 6 cut(s) | 128, 2340, 2776, 3632, 3679, 3954 |
| AccB1I | GGYRCC | 4 cut(s) | 1427, 2210, 3745, 4105 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 281 |
| AccI | GTMKAC | 3 cut(s) | 1222, 2875, 3583 |
| AccII | CGCG | 1 cut(s) | 3636 |
| AciI | CCGC | 8 cut(s) | 789, 983, 986, 1930, 2541, 3634, 3790, 4089 |
| AclI | AACGTT | 1 cut(s) | 3703 |
| AclWI | GGATC | 8 cut(s) | 266, 1286, 1434, 2383, 2573, 2947, 3068, 3081 |
| AcoI | YGGCCR | 2 cut(s) | 786, 1801 |
| AcuI | CTGAAG | 2 cut(s) | 945, 1377 |
| AcyI | GRCGYC | 1 cut(s) | 2035 |
| AdeI | CACNNNGTG | 1 cut(s) | 3525 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 281, 821, 1423, 1648, 2573, 3208 |
| AflII | CTTAAG | 2 cut(s) | 797, 2884 |
| AflIII | ACRYGT | 3 cut(s) | 1810, 3738, 3754 |
| AgeI | ACCGGT | 2 cut(s) | 3127, 3403 |
| AjiI | CACGTC | 1 cut(s) | 1811 |
| AjnI | CCWGG | 3 cut(s) | 182, 1756, 2029 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 179, 211, 540, 572 |
| AleI | CACNNNNGTG | 1 cut(s) | 2333 |
| Alw21I | GWGCWC | 6 cut(s) | 375, 1737, 2486, 2635, 3348, 4009 |
| Alw26I | GTCTC | 3 cut(s) | 655, 1407, 3381 |
| Alw44I | GTGCAC | 2 cut(s) | 2482, 4005 |
| AlwI | GGATC | 8 cut(s) | 266, 1286, 1434, 2383, 2573, 2947, 3068, 3081 |
| Ama87I | CYCGRG | 1 cut(s) | 3335 |
| AoxI | GGCC | 3 cut(s) | 786, 1801, 3876 |
| ApaLI | GTGCAC | 2 cut(s) | 2482, 4005 |
| ApeKI | GCWGC | 8 cut(s) | 5, 635, 827, 1103, 1553, 1672, 1792, 2046 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 44, 76, 2261, 2293 |
| AsiGI | ACCGGT | 2 cut(s) | 3127, 3403 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 415, 1118, 4058 |
| AspLEI | GCGC | 2 cut(s) | 1989, 3334 |
| AsuC2I | CCSGG | 2 cut(s) | 816, 2583 |
| AsuII | TTCGAA | 1 cut(s) | 893 |
| AvaI | CYCGRG | 1 cut(s) | 3335 |
| AxyI | CCTNAGG | 2 cut(s) | 2064, 2184 |
| BaeGI | GKGCMC | 3 cut(s) | 389, 2486, 4009 |
| BalI | TGGCCA | 1 cut(s) | 1803 |
| BamHI | GGATCC | 1 cut(s) | 3073 |
| BanI | GGYRCC | 4 cut(s) | 1427, 2210, 3745, 4105 |
| BanII | GRGCYC | 1 cut(s) | 3348 |
| BauI | CACGAG | 1 cut(s) | 676 |
| BbsI | GAAGAC | 3 cut(s) | 933, 1641, 2030 |
| Bbv12I | GWGCWC | 6 cut(s) | 375, 1737, 2486, 2635, 3348, 4009 |
| BbvCI | CCTCAGC | 1 cut(s) | 3141 |
| BbvI | GCAGC | 7 cut(s) | 647, 839, 1090, 1540, 1684, 1804, 2058 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 205, 239, 2501, 2535 |
| BciT130I | CCWGG | 3 cut(s) | 184, 1758, 2031 |
| BciVI | GTATCC | 1 cut(s) | 3531 |
| BclI | TGATCA | 4 cut(s) | 616, 2439, 2614, 3841 |
| BcnI | CCSGG | 2 cut(s) | 816, 2583 |
| BcoDI | GTCTC | 3 cut(s) | 655, 1407, 3381 |
| BfaI | CTAG | 7 cut(s) | 405, 1518, 2207, 2262, 2346, 2393, 2757 |
| BfmI | CTRYAG | 1 cut(s) | 665 |
| BfoI | RGCGCY | 2 cut(s) | 1990, 3335 |
| BfrI | CTTAAG | 2 cut(s) | 797, 2884 |
| BfuAI | ACCTGC | 6 cut(s) | 128, 2340, 2776, 3632, 3679, 3954 |
| BfuI | GTATCC | 1 cut(s) | 3531 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 14 |
| BglII | AGATCT | 1 cut(s) | 3932 |
| BmcAI | AGTACT | 2 cut(s) | 1274, 3059 |
| Bme1390I | CCNGG | 5 cut(s) | 184, 816, 1758, 2031, 2583 |
| BmeT110I | CYCGRG | 1 cut(s) | 3335 |
| BmgBI | CACGTC | 1 cut(s) | 1811 |
| BmiI | GGNNCC | 9 cut(s) | 1429, 1468, 1833, 2190, 2212, 2509, 3075, 3747, 4107 |
| BmrFI | CCNGG | 5 cut(s) | 184, 816, 1758, 2031, 2583 |
| BmrI | ACTGGG | 1 cut(s) | 2724 |
| BmsI | GCATC | 7 cut(s) | 151, 541, 1565, 1866, 2107, 2835, 3628 |
| BmuI | ACTGGG | 1 cut(s) | 2724 |
| BpiI | GAAGAC | 3 cut(s) | 933, 1641, 2030 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2222, 2254 |
| BpmI | CTGGAG | 2 cut(s) | 1371, 2964 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1362, 1712, 3141, 3360 |
| Bpu14I | TTCGAA | 1 cut(s) | 893 |
| BpuEI | CTTGAG | 8 cut(s) | 230, 1545, 2004, 2456, 2545, 2963, 3224, 4055 |
| BpuMI | CCSGG | 2 cut(s) | 816, 2583 |
| BsaHI | GRCGYC | 1 cut(s) | 2035 |
| BsaI | GGTCTC | 1 cut(s) | 1407 |
| BsaJI | CCNNGG | 4 cut(s) | 543, 2029, 2295, 3879 |
| BsaWI | WCCGGW | 3 cut(s) | 3127, 3292, 3403 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 126, 156, 3203, 3233, 3763, 3793, 3889, 3919 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 281, 821, 1423, 1648, 2573, 3208 |
| Bse118I | RCCGGY | 2 cut(s) | 3127, 3403 |
| Bse1I | ACTGG | 6 cut(s) | 265, 1354, 1431, 2126, 2719, 2956 |
| Bse21I | CCTNAGG | 2 cut(s) | 2064, 2184 |
| Bse3DI | GCAATG | 3 cut(s) | 1503, 2094, 3234 |
| BseBI | CCWGG | 3 cut(s) | 184, 1758, 2031 |
| BseDI | CCNNGG | 4 cut(s) | 543, 2029, 2295, 3879 |
| BseGI | GGATG | 8 cut(s) | 997, 1702, 1792, 2122, 2440, 3491, 3773, 4048 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 281, 821, 1423, 1648, 2573, 3208 |
| BseMI | GCAATG | 3 cut(s) | 1503, 2094, 3234 |
| BseNI | ACTGG | 6 cut(s) | 265, 1354, 1431, 2126, 2719, 2956 |
| BseRI | GAGGAG | 6 cut(s) | 2201, 3227, 3230, 3248, 3563, 3897 |
| BseSI | GKGCMC | 3 cut(s) | 389, 2486, 4009 |
| BseXI | GCAGC | 7 cut(s) | 647, 839, 1090, 1540, 1684, 1804, 2058 |
| BseYI | CCCAGC | 1 cut(s) | 2042 |
| BsgI | GTGCAG | 6 cut(s) | 846, 985, 1639, 2804, 3062, 3707 |
| Bsh1236I | CGCG | 1 cut(s) | 3636 |
| BshFI | GGCC | 3 cut(s) | 788, 1803, 3878 |
| BshNI | GGYRCC | 4 cut(s) | 1427, 2210, 3745, 4105 |
| BshTI | ACCGGT | 2 cut(s) | 3127, 3403 |
| BsiHKAI | GWGCWC | 6 cut(s) | 375, 1737, 2486, 2635, 3348, 4009 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3335 |
| BsiSI | CCGG | 5 cut(s) | 815, 2582, 3128, 3293, 3404 |
| BslFI | GGGAC | 4 cut(s) | 507, 1103, 2289, 2598 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 281, 821, 1423, 1648, 2573, 3208 |
| BsmAI | GTCTC | 3 cut(s) | 655, 1407, 3381 |
| BsmBI | CGTCTC | 1 cut(s) | 3381 |
| BsmFI | GGGAC | 4 cut(s) | 507, 1103, 2289, 2598 |
| BsmI | GAATGC | 3 cut(s) | 1453, 2260, 4058 |
| BsnI | GGCC | 3 cut(s) | 788, 1803, 3878 |
| Bso31I | GGTCTC | 1 cut(s) | 1407 |
| BsoBI | CYCGRG | 1 cut(s) | 3335 |
| Bsp119I | TTCGAA | 1 cut(s) | 893 |
| Bsp1286I | GDGCHC | 7 cut(s) | 375, 389, 1737, 2486, 2635, 3348, 4009 |
| Bsp19I | CCATGG | 1 cut(s) | 543 |
| BspACI | CCGC | 8 cut(s) | 789, 983, 986, 1930, 2541, 3634, 3790, 4089 |
| BspANI | GGCC | 3 cut(s) | 788, 1803, 3878 |
| BspFNI | CGCG | 1 cut(s) | 3636 |
| BspLI | GGNNCC | 9 cut(s) | 1429, 1468, 1833, 2190, 2212, 2509, 3075, 3747, 4107 |
| BspMI | ACCTGC | 6 cut(s) | 128, 2340, 2776, 3632, 3679, 3954 |
| BspPI | GGATC | 8 cut(s) | 266, 1286, 1434, 2383, 2573, 2947, 3068, 3081 |
| BspQI | GCTCTTC | 3 cut(s) | 556, 2151, 2640 |
| BspT104I | TTCGAA | 1 cut(s) | 893 |
| BspT107I | GGYRCC | 4 cut(s) | 1427, 2210, 3745, 4105 |
| BspTI | CTTAAG | 2 cut(s) | 797, 2884 |
| BspTNI | GGTCTC | 1 cut(s) | 1407 |
| BsrDI | GCAATG | 3 cut(s) | 1503, 2094, 3234 |
| BsrFI | RCCGGY | 2 cut(s) | 3127, 3403 |
| BsrI | ACTGG | 6 cut(s) | 265, 1354, 1431, 2126, 2719, 2956 |
| BssAI | RCCGGY | 2 cut(s) | 3127, 3403 |
| BssECI | CCNNGG | 4 cut(s) | 543, 2029, 2295, 3879 |
| BssNI | GRCGYC | 1 cut(s) | 2035 |
| BssSI | CACGAG | 1 cut(s) | 676 |
| BssT1I | CCWWGG | 2 cut(s) | 543, 3879 |
| Bst2BI | CACGAG | 1 cut(s) | 676 |
| Bst2UI | CCWGG | 3 cut(s) | 184, 1758, 2031 |
| Bst6I | CTCTTC | 7 cut(s) | 556, 1472, 1641, 2058, 2151, 2640, 3294 |
| BstACI | GRCGYC | 1 cut(s) | 2035 |
| BstAFI | CTTAAG | 2 cut(s) | 797, 2884 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1550, 2179 |
| BstBI | TTCGAA | 1 cut(s) | 893 |
| BstC8I | GCNNGC | 7 cut(s) | 224, 228, 296, 1041, 3312, 3477, 3794 |
| BstDSI | CCRYGG | 2 cut(s) | 543, 2295 |
| BstF5I | GGATG | 8 cut(s) | 997, 1702, 1792, 2122, 2440, 3491, 3773, 4048 |
| BstFNI | CGCG | 1 cut(s) | 3636 |
| BstH2I | RGCGCY | 2 cut(s) | 1990, 3335 |
| BstHHI | GCGC | 2 cut(s) | 1989, 3334 |
| BstMAI | GTCTC | 3 cut(s) | 655, 1407, 3381 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 14, 236, 1514, 1550, 1722, 1995, 2179, 2188, 4075 |
| BstNI | CCWGG | 3 cut(s) | 184, 1758, 2031 |
| BstNSI | RCATGY | 2 cut(s) | 226, 3950 |
| BstSCI | CCNGG | 5 cut(s) | 182, 814, 1756, 2029, 2581 |
| BstSFI | CTRYAG | 1 cut(s) | 665 |
| BstSLI | GKGCMC | 3 cut(s) | 389, 2486, 4009 |
| BstUI | CGCG | 1 cut(s) | 3636 |
| BstV1I | GCAGC | 7 cut(s) | 647, 839, 1090, 1540, 1684, 1804, 2058 |
| BstV2I | GAAGAC | 3 cut(s) | 933, 1641, 2030 |
| BstX2I | RGATCY | 5 cut(s) | 1439, 2388, 2952, 3073, 3932 |
| BstYI | RGATCY | 5 cut(s) | 1439, 2388, 2952, 3073, 3932 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2064, 2184 |
| BsuI | GTATCC | 1 cut(s) | 3531 |
| BsuRI | GGCC | 3 cut(s) | 788, 1803, 3878 |
| BtgI | CCRYGG | 2 cut(s) | 543, 2295 |
| BtgZI | GCGATG | 1 cut(s) | 3651 |
| BtrI | CACGTC | 1 cut(s) | 1811 |
| BtsCI | GGATG | 8 cut(s) | 997, 1702, 1792, 2122, 2440, 3491, 3773, 4048 |
| BtsI | GCAGTG | 2 cut(s) | 1927, 4007 |
| BtsIMutI | CAGTG | 7 cut(s) | 605, 691, 959, 1927, 2133, 3723, 4007 |
| BveI | ACCTGC | 6 cut(s) | 128, 2340, 2776, 3632, 3679, 3954 |
| Cac8I | GCNNGC | 7 cut(s) | 224, 228, 296, 1041, 3312, 3477, 3794 |
| CfoI | GCGC | 2 cut(s) | 1989, 3334 |
| Cfr10I | RCCGGY | 2 cut(s) | 3127, 3403 |
| CspAI | ACCGGT | 2 cut(s) | 3127, 3403 |
| DraI | TTTAAA | 1 cut(s) | 1149 |
| DraIII | CACNNNGTG | 1 cut(s) | 3525 |
| EaeI | YGGCCR | 2 cut(s) | 786, 1801 |
| Eam1104I | CTCTTC | 7 cut(s) | 556, 1472, 1641, 2058, 2151, 2640, 3294 |
| EarI | CTCTTC | 7 cut(s) | 556, 1472, 1641, 2058, 2151, 2640, 3294 |
| EciI | GGCGGA | 1 cut(s) | 1919 |
| Ecl136II | GAGCTC | 1 cut(s) | 3346 |
| Eco130I | CCWWGG | 2 cut(s) | 543, 3879 |
| Eco24I | GRGCYC | 1 cut(s) | 3348 |
| Eco31I | GGTCTC | 1 cut(s) | 1407 |
| Eco32I | GATATC | 1 cut(s) | 3502 |
| Eco53kI | GAGCTC | 1 cut(s) | 3346 |
| Eco57I | CTGAAG | 2 cut(s) | 945, 1377 |
| Eco81I | CCTNAGG | 2 cut(s) | 2064, 2184 |
| Eco88I | CYCGRG | 1 cut(s) | 3335 |
| EcoICRI | GAGCTC | 1 cut(s) | 3346 |
| EcoRI | GAATTC | 5 cut(s) | 512, 697, 1118, 1390, 2234 |
| EcoRII | CCWGG | 3 cut(s) | 182, 1756, 2029 |
| EcoRV | GATATC | 1 cut(s) | 3502 |
| EcoT14I | CCWWGG | 2 cut(s) | 543, 3879 |
| EcoT22I | ATGCAT | 1 cut(s) | 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 3348 |
| ErhI | CCWWGG | 2 cut(s) | 543, 3879 |
| Esp3I | CGTCTC | 1 cut(s) | 3381 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 791, 823, 927, 959, 2910, 2942 |
| FaqI | GGGAC | 4 cut(s) | 507, 1103, 2289, 2598 |
| FbaI | TGATCA | 4 cut(s) | 616, 2439, 2614, 3841 |
| FblI | GTMKAC | 3 cut(s) | 1222, 2875, 3583 |
| FokI | GGATG | 8 cut(s) | 1004, 1689, 1799, 2129, 2447, 3498, 3780, 4055 |
| FriOI | GRGCYC | 1 cut(s) | 3348 |
| FspBI | CTAG | 7 cut(s) | 405, 1518, 2207, 2262, 2346, 2393, 2757 |
| GlaI | GCGC | 2 cut(s) | 1988, 3333 |
| GsaI | CCCAGC | 1 cut(s) | 2046 |
| GsuI | CTGGAG | 2 cut(s) | 1371, 2964 |
| HaeII | RGCGCY | 2 cut(s) | 1990, 3335 |
| HaeIII | GGCC | 3 cut(s) | 788, 1803, 3878 |
| HapII | CCGG | 5 cut(s) | 815, 2582, 3128, 3293, 3404 |
| HhaI | GCGC | 2 cut(s) | 1989, 3334 |
| Hin1I | GRCGYC | 1 cut(s) | 2035 |
| Hin6I | GCGC | 2 cut(s) | 1987, 3332 |
| HinP1I | GCGC | 2 cut(s) | 1987, 3332 |
| HincII | GTYRAC | 4 cut(s) | 427, 2026, 2072, 3584 |
| HindII | GTYRAC | 4 cut(s) | 427, 2026, 2072, 3584 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HpaII | CCGG | 5 cut(s) | 815, 2582, 3128, 3293, 3404 |
| Hpy99I | CGWCG | 2 cut(s) | 52, 3585 |
| HpyCH4IV | ACGT | 9 cut(s) | 1810, 2035, 2397, 2587, 3306, 3580, 3703, 3738, 3754 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 14, 236, 1514, 1550, 1722, 1995, 2179, 2188, 4075 |
| HpySE526I | ACGT | 9 cut(s) | 1810, 2035, 2397, 2587, 3306, 3580, 3703, 3738, 3754 |
| Hsp92I | GRCGYC | 1 cut(s) | 2035 |
| HspAI | GCGC | 2 cut(s) | 1987, 3332 |
| Ksp22I | TGATCA | 4 cut(s) | 616, 2439, 2614, 3841 |
| LguI | GCTCTTC | 3 cut(s) | 556, 2151, 2640 |
| LmnI | GCTCC | 8 cut(s) | 134, 1352, 1466, 1837, 2188, 3319, 4017, 4075 |
| Lsp1109I | GCAGC | 7 cut(s) | 647, 839, 1090, 1540, 1684, 1804, 2058 |
| LweI | GCATC | 7 cut(s) | 151, 541, 1565, 1866, 2107, 2835, 3628 |
| MaeI | CTAG | 7 cut(s) | 405, 1518, 2207, 2262, 2346, 2393, 2757 |
| MaeII | ACGT | 9 cut(s) | 1810, 2035, 2397, 2587, 3306, 3580, 3703, 3738, 3754 |
| MaeIII | GTNAC | 6 cut(s) | 21, 142, 584, 680, 2352, 2750 |
| MfeI | CAATTG | 5 cut(s) | 840, 1971, 2904, 3192, 3480 |
| MflI | RGATCY | 5 cut(s) | 1439, 2388, 2952, 3073, 3932 |
| MhlI | GDGCHC | 7 cut(s) | 375, 389, 1737, 2486, 2635, 3348, 4009 |
| MlsI | TGGCCA | 1 cut(s) | 1803 |
| MluNI | TGGCCA | 1 cut(s) | 1803 |
| MlyI | GAGTC | 6 cut(s) | 97, 812, 1076, 1216, 2285, 3239 |
| Mox20I | TGGCCA | 1 cut(s) | 1803 |
| Mph1103I | ATGCAT | 1 cut(s) | 579 |
| MroXI | GAANNNNTTC | 3 cut(s) | 415, 1118, 4058 |
| MscI | TGGCCA | 1 cut(s) | 1803 |
| MslI | CAYNNNNRTG | 5 cut(s) | 945, 1265, 2333, 3095, 4020 |
| Msp20I | TGGCCA | 1 cut(s) | 1803 |
| MspA1I | CMGCKG | 2 cut(s) | 983, 2543 |
| MspCI | CTTAAG | 2 cut(s) | 797, 2884 |
| MspI | CCGG | 5 cut(s) | 815, 2582, 3128, 3293, 3404 |
| MspR9I | CCNGG | 5 cut(s) | 184, 816, 1758, 2031, 2583 |
| MunI | CAATTG | 5 cut(s) | 840, 1971, 2904, 3192, 3480 |
| Mva1269I | GAATGC | 3 cut(s) | 1453, 2260, 4058 |
| MvaI | CCWGG | 3 cut(s) | 184, 1758, 2031 |
| MvnI | CGCG | 1 cut(s) | 3636 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 14, 236, 1514, 1550, 1722, 1995, 2179, 2188, 4075 |
| NciI | CCSGG | 2 cut(s) | 816, 2583 |
| NcoI | CCATGG | 1 cut(s) | 543 |
| NlaIV | GGNNCC | 9 cut(s) | 1429, 1468, 1833, 2190, 2212, 2509, 3075, 3747, 4107 |
| NmuCI | GTSAC | 1 cut(s) | 584 |
| NsiI | ATGCAT | 1 cut(s) | 579 |
| NspI | RCATGY | 2 cut(s) | 226, 3950 |
| NspV | TTCGAA | 1 cut(s) | 893 |
| OliI | CACNNNNGTG | 1 cut(s) | 2333 |
| PaeI | GCATGC | 1 cut(s) | 226 |
| PaqCI | CACCTGC | 1 cut(s) | 128 |
| PciSI | GCTCTTC | 3 cut(s) | 556, 2151, 2640 |
| PctI | GAATGC | 3 cut(s) | 1453, 2260, 4058 |
| PdmI | GAANNNNTTC | 3 cut(s) | 415, 1118, 4058 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 281 |
| PfoI | TCCNGGA | 3 cut(s) | 182, 814, 2581 |
| PinAI | ACCGGT | 2 cut(s) | 3127, 3403 |
| PleI | GAGTC | 6 cut(s) | 96, 811, 1076, 1215, 2284, 3239 |
| PpsI | GAGTC | 6 cut(s) | 96, 811, 1076, 1215, 2284, 3239 |
| PsiI | TTATAA | 1 cut(s) | 71 |
| Psp124BI | GAGCTC | 1 cut(s) | 3348 |
| Psp1406I | AACGTT | 1 cut(s) | 3703 |
| Psp6I | CCWGG | 3 cut(s) | 182, 1756, 2029 |
| PspFI | CCCAGC | 1 cut(s) | 2042 |
| PspGI | CCWGG | 3 cut(s) | 182, 1756, 2029 |
| PspN4I | GGNNCC | 9 cut(s) | 1429, 1468, 1833, 2190, 2212, 2509, 3075, 3747, 4107 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1564, 1596, 2881, 2913 |
| PsuI | RGATCY | 5 cut(s) | 1439, 2388, 2952, 3073, 3932 |
| RseI | CAYNNNNRTG | 5 cut(s) | 945, 1265, 2333, 3095, 4020 |
| SacI | GAGCTC | 1 cut(s) | 3348 |
| SalI | GTCGAC | 1 cut(s) | 3582 |
| SapI | GCTCTTC | 3 cut(s) | 556, 2151, 2640 |
| ScaI | AGTACT | 2 cut(s) | 1274, 3059 |
| SchI | GAGTC | 6 cut(s) | 97, 812, 1076, 1216, 2285, 3239 |
| ScrFI | CCNGG | 5 cut(s) | 184, 816, 1758, 2031, 2583 |
| SduI | GDGCHC | 7 cut(s) | 375, 389, 1737, 2486, 2635, 3348, 4009 |
| SfaNI | GCATC | 7 cut(s) | 151, 541, 1565, 1866, 2107, 2835, 3628 |
| SfcI | CTRYAG | 1 cut(s) | 665 |
| SfuI | TTCGAA | 1 cut(s) | 893 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 945, 1265, 2333, 3095, 4020 |
| SphI | GCATGC | 1 cut(s) | 226 |
| SsiI | CCGC | 8 cut(s) | 789, 983, 986, 1930, 2541, 3634, 3790, 4089 |
| SspI | AATATT | 1 cut(s) | 2422 |
| SspMI | CTAG | 7 cut(s) | 405, 1518, 2207, 2262, 2346, 2393, 2757 |
| SstI | GAGCTC | 1 cut(s) | 3348 |
| StyD4I | CCNGG | 5 cut(s) | 182, 814, 1756, 2029, 2581 |
| StyI | CCWWGG | 2 cut(s) | 543, 3879 |
| TaiI | ACGT | 9 cut(s) | 1813, 2038, 2400, 2590, 3309, 3583, 3706, 3741, 3757 |
| TaqI | TCGA | 9 cut(s) | 50, 152, 244, 375, 732, 893, 3093, 3162, 3583 |
| TaqII | GACCGA | 2 cut(s) | 1431, 2730 |
| TatI | WGTACW | 8 cut(s) | 331, 1163, 1272, 1571, 2545, 3003, 3057, 3527 |
| TauI | GCSGC | 2 cut(s) | 791, 986 |
| TscAI | CASTG | 7 cut(s) | 612, 691, 966, 1927, 2133, 3723, 4014 |
| TseFI | GTSAC | 1 cut(s) | 584 |
| TseI | GCWGC | 8 cut(s) | 5, 635, 827, 1103, 1553, 1672, 1792, 2046 |
| Tsp45I | GTSAC | 1 cut(s) | 584 |
| TspGWI | ACGGA | 2 cut(s) | 2215, 4055 |
| TspRI | CASTG | 7 cut(s) | 612, 691, 966, 1927, 2133, 3723, 4014 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 281 |
| Vha464I | CTTAAG | 2 cut(s) | 797, 2884 |
| VneI | GTGCAC | 2 cut(s) | 2482, 4005 |
| XceI | RCATGY | 2 cut(s) | 226, 3950 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 257, 2148 |
| XmiI | GTMKAC | 3 cut(s) | 1222, 2875, 3583 |
| XmnI | GAANNNNTTC | 3 cut(s) | 415, 1118, 4058 |
| XspI | CTAG | 7 cut(s) | 405, 1518, 2207, 2262, 2346, 2393, 2757 |
| ZraI | GACGTC | 1 cut(s) | 2036 |
| ZrmI | AGTACT | 2 cut(s) | 1274, 3059 |
| Zsp2I | ATGCAT | 1 cut(s) | 579 |