protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 739 - 895 | 3.2e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 934 - 1032 | 1.1e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 959 - 1062 | 2.1e-38 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 1209 - 1302 | 1.2e-15 | Integrase core domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3608, 3767 |
| AarI | CACCTGC | 1 cut(s) | 1294 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2546 |
| Acc16I | TGCGCA | 1 cut(s) | 1554 |
| Acc36I | ACCTGC | 3 cut(s) | 521, 1294, 2705 |
| Acc65I | GGTACC | 2 cut(s) | 270, 3120 |
| AccB1I | GGYRCC | 6 cut(s) | 270, 623, 1436, 1786, 3120, 3552 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4000 |
| AccI | GTMKAC | 1 cut(s) | 512 |
| AccIII | TCCGGA | 1 cut(s) | 3289 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclI | AACGTT | 5 cut(s) | 1689, 2423, 3222, 3365, 3997 |
| AcoI | YGGCCR | 1 cut(s) | 2320 |
| AcsI | RAATTY | 6 cut(s) | 448, 983, 1451, 1559, 3059, 3618 |
| AcuI | CTGAAG | 1 cut(s) | 1758 |
| AcvI | CACGTG | 1 cut(s) | 128 |
| AcyI | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| AfaI | GTAC | 7 cut(s) | 272, 977, 1296, 2470, 2601, 3082, 3122 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 50, 730, 1027, 1348, 1401, 2116, 2265, 4000 |
| AflII | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| AflIII | ACRYGT | 2 cut(s) | 125, 3542 |
| AjnI | CCWGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| AleI | CACNNNNGTG | 1 cut(s) | 2681 |
| Alw21I | GWGCWC | 3 cut(s) | 373, 1656, 3808 |
| Alw26I | GTCTC | 5 cut(s) | 1006, 1060, 1844, 1915, 2886 |
| Alw44I | GTGCAC | 1 cut(s) | 369 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| Aor13HI | TCCGGA | 1 cut(s) | 3289 |
| AoxI | GGCC | 7 cut(s) | 75, 107, 894, 954, 2320, 2759, 2928 |
| ApaLI | GTGCAC | 1 cut(s) | 369 |
| ApeKI | GCWGC | 2 cut(s) | 11, 3110 |
| ApoI | RAATTY | 6 cut(s) | 448, 983, 1451, 1559, 3059, 3618 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2214, 2246, 3411, 3443 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2822, 3060 |
| Asp718I | GGTACC | 2 cut(s) | 270, 3120 |
| AspA2I | CCTAGG | 1 cut(s) | 281 |
| AspLEI | GCGC | 2 cut(s) | 1555, 2730 |
| AsuHPI | GGTGA | 6 cut(s) | 320, 1048, 1229, 1322, 1627, 2127 |
| AsuII | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| AvaII | GGWCC | 7 cut(s) | 136, 1944, 2692, 2985, 3575, 3650, 3971 |
| AvrII | CCTAGG | 1 cut(s) | 281 |
| AxyI | CCTNAGG | 1 cut(s) | 1275 |
| BaeGI | GKGCMC | 1 cut(s) | 373 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 254, 262, 287, 295, 3072, 3105 |
| BalI | TGGCCA | 1 cut(s) | 2322 |
| BamHI | GGATCC | 1 cut(s) | 1096 |
| BanI | GGYRCC | 6 cut(s) | 270, 623, 1436, 1786, 3120, 3552 |
| BanII | GRGCYC | 2 cut(s) | 1656, 3215 |
| BbrPI | CACGTG | 1 cut(s) | 128 |
| Bbv12I | GWGCWC | 3 cut(s) | 373, 1656, 3808 |
| BbvI | GCAGC | 2 cut(s) | 23, 3122 |
| BccI | CCATC | 9 cut(s) | 312, 635, 1342, 1451, 1757, 2050, 2339, 2975, 3812 |
| BceAI | ACGGC | 5 cut(s) | 644, 1422, 2618, 2915, 4044 |
| BciT130I | CCWGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| BciVI | GTATCC | 3 cut(s) | 1509, 3159, 3945 |
| BclI | TGATCA | 3 cut(s) | 492, 2296, 3103 |
| BcoDI | GTCTC | 5 cut(s) | 1006, 1060, 1844, 1915, 2886 |
| BfmI | CTRYAG | 4 cut(s) | 780, 2242, 2431, 2722 |
| BfoI | RGCGCY | 1 cut(s) | 2731 |
| BfrI | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| BfuAI | ACCTGC | 3 cut(s) | 521, 1294, 2705 |
| BfuI | GTATCC | 3 cut(s) | 1509, 3159, 3945 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 902, 2927 |
| BglII | AGATCT | 1 cut(s) | 2650 |
| BisI | GCNGC | 3 cut(s) | 12, 48, 3111 |
| BlnI | CCTAGG | 1 cut(s) | 281 |
| BlpI | GCTNAGC | 1 cut(s) | 2013 |
| BlsI | GCNGC | 3 cut(s) | 13, 49, 3112 |
| Bme1390I | CCNGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| Bme18I | GGWCC | 7 cut(s) | 136, 1944, 2692, 2985, 3575, 3650, 3971 |
| BmrFI | CCNGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| BmsI | GCATC | 6 cut(s) | 1211, 1573, 1902, 2292, 2986, 3997 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1040, 1072 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3860 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2013 |
| Bpu14I | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| Bsa29I | ATCGAT | 1 cut(s) | 1258 |
| BsaAI | YACGTR | 1 cut(s) | 128 |
| BsaBI | GATNNNNATC | 1 cut(s) | 938 |
| BsaHI | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| BsaI | GGTCTC | 1 cut(s) | 2886 |
| BsaJI | CCNNGG | 8 cut(s) | 281, 1100, 1587, 1947, 2464, 3149, 3326, 3966 |
| BsaWI | WCCGGW | 1 cut(s) | 3289 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 832, 862, 1452, 1482, 3982, 4012 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 50, 730, 1027, 1348, 1401, 2116, 2265, 4000 |
| Bse1I | ACTGG | 3 cut(s) | 2138, 2224, 3568 |
| Bse21I | CCTNAGG | 1 cut(s) | 1275 |
| Bse3DI | GCAATG | 4 cut(s) | 1599, 1808, 1853, 2373 |
| Bse8I | GATNNNNATC | 1 cut(s) | 938 |
| BseAI | TCCGGA | 1 cut(s) | 3289 |
| BseBI | CCWGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| BseCI | ATCGAT | 1 cut(s) | 1258 |
| BseDI | CCNNGG | 8 cut(s) | 281, 1100, 1587, 1947, 2464, 3149, 3326, 3966 |
| BseJI | GATNNNNATC | 1 cut(s) | 938 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 50, 730, 1027, 1348, 1401, 2116, 2265, 4000 |
| BseMI | GCAATG | 4 cut(s) | 1599, 1808, 1853, 2373 |
| BseMII | CTCAG | 3 cut(s) | 1071, 2219, 2925 |
| BseNI | ACTGG | 3 cut(s) | 2138, 2224, 3568 |
| BseRI | GAGGAG | 4 cut(s) | 746, 749, 1367, 2018 |
| BseSI | GKGCMC | 1 cut(s) | 373 |
| BseXI | GCAGC | 2 cut(s) | 23, 3122 |
| BsgI | GTGCAG | 3 cut(s) | 950, 1322, 2838 |
| BshFI | GGCC | 7 cut(s) | 77, 109, 896, 956, 2322, 2761, 2930 |
| BshNI | GGYRCC | 6 cut(s) | 270, 623, 1436, 1786, 3120, 3552 |
| BshVI | ATCGAT | 1 cut(s) | 1258 |
| BsiHKAI | GWGCWC | 3 cut(s) | 373, 1656, 3808 |
| BsiSI | CCGG | 1 cut(s) | 3290 |
| BslFI | GGGAC | 2 cut(s) | 1377, 2963 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 50, 730, 1027, 1348, 1401, 2116, 2265, 4000 |
| BsmAI | GTCTC | 5 cut(s) | 1006, 1060, 1844, 1915, 2886 |
| BsmBI | CGTCTC | 1 cut(s) | 1060 |
| BsmFI | GGGAC | 2 cut(s) | 1377, 2963 |
| BsmI | GAATGC | 3 cut(s) | 1617, 2188, 2445 |
| BsnI | GGCC | 7 cut(s) | 77, 109, 896, 956, 2322, 2761, 2930 |
| Bso31I | GGTCTC | 1 cut(s) | 2886 |
| Bsp119I | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| Bsp1286I | GDGCHC | 4 cut(s) | 373, 1656, 3215, 3808 |
| Bsp13I | TCCGGA | 1 cut(s) | 3289 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2013 |
| Bsp19I | CCATGG | 1 cut(s) | 1587 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 7 cut(s) | 77, 109, 896, 956, 2322, 2761, 2930 |
| BspCNI | CTCAG | 3 cut(s) | 1070, 2218, 2924 |
| BspDI | ATCGAT | 1 cut(s) | 1258 |
| BspEI | TCCGGA | 1 cut(s) | 3289 |
| BspHI | TCATGA | 3 cut(s) | 598, 1398, 2380 |
| BspMAI | CTGCAG | 1 cut(s) | 784 |
| BspMI | ACCTGC | 3 cut(s) | 521, 1294, 2705 |
| BspQI | GCTCTTC | 1 cut(s) | 1644 |
| BspT104I | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| BspT107I | GGYRCC | 6 cut(s) | 270, 623, 1436, 1786, 3120, 3552 |
| BspTI | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| BspTNI | GGTCTC | 1 cut(s) | 2886 |
| BsrDI | GCAATG | 4 cut(s) | 1599, 1808, 1853, 2373 |
| BsrI | ACTGG | 3 cut(s) | 2138, 2224, 3568 |
| BssECI | CCNNGG | 8 cut(s) | 281, 1100, 1587, 1947, 2464, 3149, 3326, 3966 |
| BssNI | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| BssT1I | CCWWGG | 5 cut(s) | 281, 1587, 1947, 3149, 3326 |
| Bst2UI | CCWGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| Bst4CI | ACNGT | 4 cut(s) | 1022, 2173, 2215, 3967 |
| Bst6I | CTCTTC | 4 cut(s) | 478, 1644, 3252, 3308 |
| BstACI | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| BstAFI | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| BstBAI | YACGTR | 1 cut(s) | 128 |
| BstBI | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| BstC8I | GCNNGC | 4 cut(s) | 45, 651, 2320, 3797 |
| BstDSI | CCRYGG | 2 cut(s) | 1587, 3966 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1399 |
| BstH2I | RGCGCY | 1 cut(s) | 2731 |
| BstHHI | GCGC | 2 cut(s) | 1555, 2730 |
| BstMAI | GTCTC | 5 cut(s) | 1006, 1060, 1844, 1915, 2886 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 527, 902, 2927, 4016 |
| BstNI | CCWGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| BstNSI | RCATGY | 4 cut(s) | 197, 2714, 3546, 3799 |
| BstSCI | CCNGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| BstSFI | CTRYAG | 4 cut(s) | 780, 2242, 2431, 2722 |
| BstSLI | GKGCMC | 1 cut(s) | 373 |
| BstV1I | GCAGC | 2 cut(s) | 23, 3122 |
| BstX2I | RGATCY | 4 cut(s) | 23, 691, 1096, 2650 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 577, 2877, 3563 |
| BstYI | RGATCY | 4 cut(s) | 23, 691, 1096, 2650 |
| Bsu15I | ATCGAT | 1 cut(s) | 1258 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1275 |
| BsuI | GTATCC | 3 cut(s) | 1509, 3159, 3945 |
| BsuRI | GGCC | 7 cut(s) | 77, 109, 896, 956, 2322, 2761, 2930 |
| BsuTUI | ATCGAT | 1 cut(s) | 1258 |
| BtgI | CCRYGG | 2 cut(s) | 1587, 3966 |
| BtsIMutI | CAGTG | 1 cut(s) | 1782 |
| BveI | ACCTGC | 3 cut(s) | 521, 1294, 2705 |
| Cac8I | GCNNGC | 4 cut(s) | 45, 651, 2320, 3797 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| CciI | TCATGA | 3 cut(s) | 598, 1398, 2380 |
| CfoI | GCGC | 2 cut(s) | 1555, 2730 |
| ClaI | ATCGAT | 1 cut(s) | 1258 |
| CseI | GACGC | 8 cut(s) | 380, 1158, 1621, 1891, 2089, 2915, 3272, 3886 |
| Csp6I | GTAC | 7 cut(s) | 271, 976, 1295, 2469, 2600, 3081, 3121 |
| CviQI | GTAC | 7 cut(s) | 271, 976, 1295, 2469, 2600, 3081, 3121 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2546 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2546 |
| EaeI | YGGCCR | 1 cut(s) | 2320 |
| Eam1104I | CTCTTC | 4 cut(s) | 478, 1644, 3252, 3308 |
| EarI | CTCTTC | 4 cut(s) | 478, 1644, 3252, 3308 |
| Ecl136II | GAGCTC | 1 cut(s) | 1654 |
| Eco130I | CCWWGG | 5 cut(s) | 281, 1587, 1947, 3149, 3326 |
| Eco24I | GRGCYC | 2 cut(s) | 1656, 3215 |
| Eco31I | GGTCTC | 1 cut(s) | 2886 |
| Eco32I | GATATC | 1 cut(s) | 1957 |
| Eco47I | GGWCC | 7 cut(s) | 136, 1944, 2692, 2985, 3575, 3650, 3971 |
| Eco53kI | GAGCTC | 1 cut(s) | 1654 |
| Eco57I | CTGAAG | 1 cut(s) | 1758 |
| Eco72I | CACGTG | 1 cut(s) | 128 |
| Eco81I | CCTNAGG | 1 cut(s) | 1275 |
| EcoICRI | GAGCTC | 1 cut(s) | 1654 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1399 |
| EcoO109I | RGGNCCY | 6 cut(s) | 75, 2760, 2985, 3575, 3650, 3971 |
| EcoRI | GAATTC | 1 cut(s) | 1451 |
| EcoRII | CCWGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| EcoRV | GATATC | 1 cut(s) | 1957 |
| EcoT14I | CCWWGG | 5 cut(s) | 281, 1587, 1947, 3149, 3326 |
| EcoT22I | ATGCAT | 3 cut(s) | 1204, 1270, 3526 |
| EcoT38I | GRGCYC | 2 cut(s) | 1656, 3215 |
| ErhI | CCWWGG | 5 cut(s) | 281, 1587, 1947, 3149, 3326 |
| Esp3I | CGTCTC | 1 cut(s) | 1060 |
| FaqI | GGGAC | 2 cut(s) | 1377, 2963 |
| FbaI | TGATCA | 3 cut(s) | 492, 2296, 3103 |
| FblI | GTMKAC | 1 cut(s) | 512 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 48, 3111 |
| FriOI | GRGCYC | 2 cut(s) | 1656, 3215 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 48, 3111 |
| FspI | TGCGCA | 1 cut(s) | 1554 |
| GlaI | GCGC | 2 cut(s) | 1554, 2729 |
| GluI | GCNGC | 3 cut(s) | 12, 48, 3111 |
| HaeII | RGCGCY | 1 cut(s) | 2731 |
| HaeIII | GGCC | 7 cut(s) | 77, 109, 896, 956, 2322, 2761, 2930 |
| HapII | CCGG | 1 cut(s) | 3290 |
| HgaI | GACGC | 8 cut(s) | 380, 1158, 1621, 1891, 2089, 2915, 3272, 3886 |
| HhaI | GCGC | 2 cut(s) | 1555, 2730 |
| Hin1I | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| Hin6I | GCGC | 2 cut(s) | 1553, 2728 |
| HinP1I | GCGC | 2 cut(s) | 1553, 2728 |
| HincII | GTYRAC | 3 cut(s) | 34, 247, 1371 |
| HindII | GTYRAC | 3 cut(s) | 34, 247, 1371 |
| HindIII | AAGCTT | 3 cut(s) | 519, 2084, 3852 |
| HinfI | GANTC | 9 cut(s) | 82, 967, 1140, 1661, 1670, 2044, 2120, 3309, 3743 |
| HpaII | CCGG | 1 cut(s) | 3290 |
| HphI | GGTGA | 6 cut(s) | 320, 1048, 1229, 1322, 1627, 2127 |
| Hpy166II | GTNNAC | 8 cut(s) | 34, 247, 371, 513, 1220, 1371, 2774, 3917 |
| Hpy8I | GTNNAC | 8 cut(s) | 34, 247, 371, 513, 1220, 1371, 2774, 3917 |
| HpyCH4III | ACNGT | 4 cut(s) | 1022, 2173, 2215, 3967 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 527, 902, 2927, 4016 |
| Hsp92I | GRCGYC | 5 cut(s) | 1632, 1883, 2100, 2907, 3264 |
| HspAI | GCGC | 2 cut(s) | 1553, 2728 |
| Kpn2I | TCCGGA | 1 cut(s) | 3289 |
| KpnI | GGTACC | 2 cut(s) | 274, 3124 |
| Ksp22I | TGATCA | 3 cut(s) | 492, 2296, 3103 |
| LguI | GCTCTTC | 1 cut(s) | 1644 |
| LmnI | GCTCC | 6 cut(s) | 40, 994, 1354, 2009, 2839, 3990 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 3122 |
| LweI | GCATC | 6 cut(s) | 1211, 1573, 1902, 2292, 2986, 3997 |
| MaeIII | GTNAC | 9 cut(s) | 612, 661, 766, 1633, 2215, 2357, 2579, 2903, 3874 |
| MfeI | CAATTG | 3 cut(s) | 1247, 1935, 4044 |
| MflI | RGATCY | 4 cut(s) | 23, 691, 1096, 2650 |
| MhlI | GDGCHC | 4 cut(s) | 373, 1656, 3215, 3808 |
| MlsI | TGGCCA | 1 cut(s) | 2322 |
| MluNI | TGGCCA | 1 cut(s) | 2322 |
| MmeI | TCCRAC | 7 cut(s) | 286, 323, 409, 722, 863, 1922, 3143 |
| Mox20I | TGGCCA | 1 cut(s) | 2322 |
| Mph1103I | ATGCAT | 3 cut(s) | 1204, 1270, 3526 |
| MroI | TCCGGA | 1 cut(s) | 3289 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2822, 3060 |
| MscI | TGGCCA | 1 cut(s) | 2322 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1233, 2681 |
| Msp20I | TGGCCA | 1 cut(s) | 2322 |
| MspA1I | CMGCKG | 1 cut(s) | 1061 |
| MspCI | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| MspI | CCGG | 1 cut(s) | 3290 |
| MspR9I | CCNGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| MunI | CAATTG | 3 cut(s) | 1247, 1935, 4044 |
| Mva1269I | GAATGC | 3 cut(s) | 1617, 2188, 2445 |
| MvaI | CCWGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 527, 902, 2927, 4016 |
| NcoI | CCATGG | 1 cut(s) | 1587 |
| NmuCI | GTSAC | 6 cut(s) | 661, 766, 1633, 2215, 2903, 3874 |
| NsbI | TGCGCA | 1 cut(s) | 1554 |
| NsiI | ATGCAT | 3 cut(s) | 1204, 1270, 3526 |
| NspI | RCATGY | 4 cut(s) | 197, 2714, 3546, 3799 |
| NspV | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| OliI | CACNNNNGTG | 1 cut(s) | 2681 |
| PaeI | GCATGC | 1 cut(s) | 3799 |
| PagI | TCATGA | 3 cut(s) | 598, 1398, 2380 |
| PaqCI | CACCTGC | 1 cut(s) | 1294 |
| PciI | ACATGT | 1 cut(s) | 3542 |
| PciSI | GCTCTTC | 1 cut(s) | 1644 |
| PctI | GAATGC | 3 cut(s) | 1617, 2188, 2445 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2822, 3060 |
| PfeI | GAWTC | 9 cut(s) | 82, 967, 1140, 1661, 1670, 2044, 2120, 3309, 3743 |
| PflFI | GACNNNGTC | 1 cut(s) | 359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4000 |
| PfoI | TCCNGGA | 1 cut(s) | 313 |
| PkrI | GCNGC | 3 cut(s) | 13, 49, 3112 |
| PmaCI | CACGTG | 1 cut(s) | 128 |
| PmlI | CACGTG | 1 cut(s) | 128 |
| Ppu21I | YACGTR | 1 cut(s) | 128 |
| PpuMI | RGGWCCY | 4 cut(s) | 2985, 3575, 3650, 3971 |
| PscI | ACATGT | 1 cut(s) | 3542 |
| PsiI | TTATAA | 2 cut(s) | 3608, 3767 |
| Psp124BI | GAGCTC | 1 cut(s) | 1656 |
| Psp1406I | AACGTT | 5 cut(s) | 1689, 2423, 3222, 3365, 3997 |
| Psp5II | RGGWCCY | 4 cut(s) | 2985, 3575, 3650, 3971 |
| Psp6I | CCWGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| PspCI | CACGTG | 1 cut(s) | 128 |
| PspGI | CCWGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| PspPPI | RGGWCCY | 4 cut(s) | 2985, 3575, 3650, 3971 |
| PstI | CTGCAG | 1 cut(s) | 784 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 4 cut(s) | 23, 691, 1096, 2650 |
| PsyI | GACNNNGTC | 1 cut(s) | 359 |
| PvuII | CAGCTG | 1 cut(s) | 1061 |
| RsaI | GTAC | 7 cut(s) | 272, 977, 1296, 2470, 2601, 3082, 3122 |
| RsaNI | GTAC | 7 cut(s) | 271, 976, 1295, 2469, 2600, 3081, 3121 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1233, 2681 |
| SacI | GAGCTC | 1 cut(s) | 1656 |
| SapI | GCTCTTC | 1 cut(s) | 1644 |
| SatI | GCNGC | 3 cut(s) | 12, 48, 3111 |
| ScrFI | CCNGG | 6 cut(s) | 315, 1101, 1784, 2466, 3314, 3733 |
| SduI | GDGCHC | 4 cut(s) | 373, 1656, 3215, 3808 |
| SfaNI | GCATC | 6 cut(s) | 1211, 1573, 1902, 2292, 2986, 3997 |
| SfcI | CTRYAG | 4 cut(s) | 780, 2242, 2431, 2722 |
| SfuI | TTCGAA | 3 cut(s) | 446, 1143, 2565 |
| SinI | GGWCC | 7 cut(s) | 136, 1944, 2692, 2985, 3575, 3650, 3971 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1233, 2681 |
| SphI | GCATGC | 1 cut(s) | 3799 |
| SsiI | CCGC | 1 cut(s) | 47 |
| SspI | AATATT | 2 cut(s) | 3455, 3778 |
| SstI | GAGCTC | 1 cut(s) | 1656 |
| StyD4I | CCNGG | 6 cut(s) | 313, 1099, 1782, 2464, 3312, 3731 |
| StyI | CCWWGG | 5 cut(s) | 281, 1587, 1947, 3149, 3326 |
| TaaI | ACNGT | 4 cut(s) | 1022, 2173, 2215, 3967 |
| TaqI | TCGA | 9 cut(s) | 299, 446, 1143, 1258, 1455, 2227, 2565, 3064, 3615 |
| TatI | WGTACW | 1 cut(s) | 1294 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 9 cut(s) | 82, 967, 1140, 1661, 1670, 2044, 2120, 3309, 3743 |
| TscAI | CASTG | 1 cut(s) | 1782 |
| TseFI | GTSAC | 6 cut(s) | 661, 766, 1633, 2215, 2903, 3874 |
| TseI | GCWGC | 2 cut(s) | 11, 3110 |
| Tsp45I | GTSAC | 6 cut(s) | 661, 766, 1633, 2215, 2903, 3874 |
| TspGWI | ACGGA | 3 cut(s) | 236, 1673, 2684 |
| TspRI | CASTG | 1 cut(s) | 1782 |
| Tth111I | GACNNNGTC | 1 cut(s) | 359 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4000 |
| Vha464I | CTTAAG | 3 cut(s) | 1916, 2575, 3404 |
| VneI | GTGCAC | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 7 cut(s) | 136, 1944, 2692, 2985, 3575, 3650, 3971 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1399 |
| XapI | RAATTY | 6 cut(s) | 448, 983, 1451, 1559, 3059, 3618 |
| XceI | RCATGY | 4 cut(s) | 197, 2714, 3546, 3799 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3274 |
| XmaJI | CCTAGG | 1 cut(s) | 281 |
| XmiI | GTMKAC | 1 cut(s) | 512 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2822, 3060 |
| Zsp2I | ATGCAT | 3 cut(s) | 1204, 1270, 3526 |