protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 82 - 174 | 1e-20 | Retrotransposon gag protein |
| RVT_1 | PF00078 | 966 - 1130 | 1.2e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1162 - 1259 | 5.3e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1186 - 1289 | 1.8e-37 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 1424 - 1517 | 3.2e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 589 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 888, 3447 |
| AatII | GACGTC | 2 cut(s) | 2077, 3533 |
| Acc16I | TGCGCA | 1 cut(s) | 2235 |
| Acc36I | ACCTGC | 4 cut(s) | 589, 1542, 3386, 4422 |
| Acc65I | GGTACC | 1 cut(s) | 3761 |
| AccB1I | GGYRCC | 2 cut(s) | 2881, 3761 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 279, 2622 |
| AccI | GTMKAC | 1 cut(s) | 2514 |
| AciI | CCGC | 3 cut(s) | 27, 2613, 2633 |
| AclI | AACGTT | 4 cut(s) | 972, 1100, 3104, 5157 |
| AcoI | YGGCCR | 2 cut(s) | 3388, 5089 |
| AcsI | RAATTY | 6 cut(s) | 179, 994, 1504, 1761, 3241, 3863 |
| AcuI | CTGAAG | 3 cut(s) | 36, 2439, 3977 |
| AcvI | CACGTG | 1 cut(s) | 4067 |
| AcyI | GRCGYC | 2 cut(s) | 2074, 3530 |
| AdeI | CACNNNGTG | 1 cut(s) | 2911 |
| AfaI | GTAC | 6 cut(s) | 663, 1807, 1986, 3151, 3763, 5145 |
| AflII | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| AflIII | ACRYGT | 1 cut(s) | 500 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3290 |
| AhlI | ACTAGT | 1 cut(s) | 4556 |
| AjiI | CACGTC | 1 cut(s) | 3871 |
| AjnI | CCWGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4932, 4964 |
| AleI | CACNNNNGTG | 2 cut(s) | 3362, 5024 |
| Alw21I | GWGCWC | 4 cut(s) | 1197, 3714, 4072, 4755 |
| ApeKI | GCWGC | 7 cut(s) | 77, 425, 548, 551, 3791, 3979, 4799 |
| ApoI | RAATTY | 6 cut(s) | 179, 994, 1504, 1761, 3241, 3863 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 350, 4778 |
| Asp718I | GGTACC | 1 cut(s) | 3761 |
| AspA2I | CCTAGG | 3 cut(s) | 1846, 1891, 4216 |
| AspLEI | GCGC | 2 cut(s) | 2236, 2994 |
| AsuHPI | GGTGA | 7 cut(s) | 570, 1446, 2156, 2308, 4538, 4692, 5095 |
| AsuII | TTCGAA | 2 cut(s) | 4860, 4915 |
| AvrII | CCTAGG | 3 cut(s) | 1846, 1891, 4216 |
| AxyI | CCTNAGG | 1 cut(s) | 5169 |
| BaeGI | GKGCMC | 5 cut(s) | 616, 809, 2835, 2886, 3474 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2256, 2289, 3022, 3055, 3753, 3786 |
| BalI | TGGCCA | 2 cut(s) | 3390, 5091 |
| BamHI | GGATCC | 3 cut(s) | 1780, 3846, 4469 |
| BanI | GGYRCC | 2 cut(s) | 2881, 3761 |
| BanII | GRGCYC | 2 cut(s) | 1197, 3714 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 504, 536, 2498, 2530 |
| BbrPI | CACGTG | 1 cut(s) | 4067 |
| BbsI | GAAGAC | 6 cut(s) | 91, 1327, 1389, 3083, 4613, 4928 |
| Bbv12I | GWGCWC | 4 cut(s) | 1197, 3714, 4072, 4755 |
| BbvCI | CCTCAGC | 1 cut(s) | 4569 |
| BbvI | GCAGC | 7 cut(s) | 89, 412, 535, 563, 3803, 3991, 4811 |
| BceAI | ACGGC | 1 cut(s) | 2703 |
| BciT130I | CCWGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| BciVI | GTATCC | 4 cut(s) | 2193, 2257, 2667, 3023 |
| BclI | TGATCA | 2 cut(s) | 2977, 4144 |
| BcuI | ACTAGT | 1 cut(s) | 4556 |
| BfmI | CTRYAG | 5 cut(s) | 75, 297, 549, 582, 2923 |
| BfoI | RGCGCY | 1 cut(s) | 2995 |
| BfrI | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| BfuAI | ACCTGC | 4 cut(s) | 589, 1542, 3386, 4422 |
| BfuI | GTATCC | 4 cut(s) | 2193, 2257, 2667, 3023 |
| BisI | GCNGC | 7 cut(s) | 78, 426, 549, 552, 3792, 3980, 4800 |
| BlnI | CCTAGG | 3 cut(s) | 1846, 1891, 4216 |
| BlsI | GCNGC | 7 cut(s) | 79, 427, 550, 553, 3793, 3981, 4801 |
| Bme1390I | CCNGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3290 |
| BmgBI | CACGTC | 1 cut(s) | 3871 |
| BmrFI | CCNGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| BmrI | ACTGGG | 1 cut(s) | 2813 |
| BmuI | ACTGGG | 1 cut(s) | 2813 |
| BpiI | GAAGAC | 6 cut(s) | 91, 1327, 1389, 3083, 4613, 4928 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1724, 1756, 2041, 2073 |
| BpmI | CTGGAG | 6 cut(s) | 576, 2702, 3129, 3287, 3443, 3537 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4569 |
| Bpu14I | TTCGAA | 2 cut(s) | 4860, 4915 |
| BsaAI | YACGTR | 1 cut(s) | 4067 |
| BsaBI | GATNNNNATC | 1 cut(s) | 835 |
| BsaHI | GRCGYC | 2 cut(s) | 2074, 3530 |
| BsaI | GGTCTC | 6 cut(s) | 482, 1433, 2525, 2818, 3433, 4579 |
| BsaWI | WCCGGW | 1 cut(s) | 1471 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 552, 582, 2675, 2705 |
| Bse1I | ACTGG | 5 cut(s) | 1252, 2540, 2819, 2883, 4637 |
| Bse21I | CCTNAGG | 1 cut(s) | 5169 |
| Bse3DI | GCAATG | 2 cut(s) | 1185, 2060 |
| Bse8I | GATNNNNATC | 1 cut(s) | 835 |
| BseBI | CCWGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| BseJI | GATNNNNATC | 1 cut(s) | 835 |
| BseMI | GCAATG | 2 cut(s) | 1185, 2060 |
| BseMII | CTCAG | 4 cut(s) | 403, 2859, 4560, 5160 |
| BseNI | ACTGG | 5 cut(s) | 1252, 2540, 2819, 2883, 4637 |
| BseRI | GAGGAG | 7 cut(s) | 573, 707, 1047, 2366, 2699, 4522, 4853 |
| BseSI | GKGCMC | 5 cut(s) | 616, 809, 2835, 2886, 3474 |
| BseXI | GCAGC | 7 cut(s) | 89, 412, 535, 563, 3803, 3991, 4811 |
| BseYI | CCCAGC | 3 cut(s) | 355, 2008, 4802 |
| BsgI | GTGCAG | 2 cut(s) | 2541, 5066 |
| BshNI | GGYRCC | 2 cut(s) | 2881, 3761 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1197, 3714, 4072, 4755 |
| BsiSI | CCGG | 1 cut(s) | 1472 |
| BslFI | GGGAC | 7 cut(s) | 759, 950, 1342, 1637, 2085, 2537, 4308 |
| BsmBI | CGTCTC | 3 cut(s) | 2377, 2726, 4970 |
| BsmFI | GGGAC | 7 cut(s) | 759, 950, 1342, 1637, 2085, 2537, 4308 |
| BsmI | GAATGC | 5 cut(s) | 1297, 1837, 2869, 4446, 4895 |
| Bso31I | GGTCTC | 6 cut(s) | 482, 1433, 2525, 2818, 3433, 4579 |
| Bsp119I | TTCGAA | 2 cut(s) | 4860, 4915 |
| Bsp1286I | GDGCHC | 9 cut(s) | 616, 809, 1197, 2835, 2886, 3474, 3714, 4072, 4755 |
| Bsp1407I | TGTACA | 1 cut(s) | 1984 |
| Bsp19I | CCATGG | 3 cut(s) | 139, 4007, 5035 |
| BspACI | CCGC | 3 cut(s) | 27, 2613, 2633 |
| BspCNI | CTCAG | 4 cut(s) | 402, 2860, 4561, 5161 |
| BspHI | TCATGA | 3 cut(s) | 720, 1227, 2197 |
| BspMAI | CTGCAG | 4 cut(s) | 79, 301, 553, 586 |
| BspMI | ACCTGC | 4 cut(s) | 589, 1542, 3386, 4422 |
| BspT104I | TTCGAA | 2 cut(s) | 4860, 4915 |
| BspT107I | GGYRCC | 2 cut(s) | 2881, 3761 |
| BspTI | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| BspTNI | GGTCTC | 6 cut(s) | 482, 1433, 2525, 2818, 3433, 4579 |
| BsrDI | GCAATG | 2 cut(s) | 1185, 2060 |
| BsrGI | TGTACA | 1 cut(s) | 1984 |
| BsrI | ACTGG | 5 cut(s) | 1252, 2540, 2819, 2883, 4637 |
| BssNI | GRCGYC | 2 cut(s) | 2074, 3530 |
| Bst2UI | CCWGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| Bst4CI | ACNGT | 8 cut(s) | 34, 117, 1706, 2854, 2896, 4258, 4583, 4612 |
| Bst6I | CTCTTC | 5 cut(s) | 1431, 2496, 2571, 4958, 4979 |
| BstACI | GRCGYC | 2 cut(s) | 2074, 3530 |
| BstAFI | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4728 |
| BstAUI | TGTACA | 1 cut(s) | 1984 |
| BstBAI | YACGTR | 1 cut(s) | 4067 |
| BstBI | TTCGAA | 2 cut(s) | 4860, 4915 |
| BstC8I | GCNNGC | 5 cut(s) | 405, 1253, 1538, 3936, 4566 |
| BstDSI | CCRYGG | 3 cut(s) | 139, 4007, 5035 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 51, 1634 |
| BstH2I | RGCGCY | 1 cut(s) | 2995 |
| BstHHI | GCGC | 2 cut(s) | 2236, 2994 |
| BstNI | CCWGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| BstNSI | RCATGY | 7 cut(s) | 205, 504, 794, 1054, 1540, 3938, 4175 |
| BstSCI | CCNGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| BstSFI | CTRYAG | 5 cut(s) | 75, 297, 549, 582, 2923 |
| BstSLI | GKGCMC | 5 cut(s) | 616, 809, 2835, 2886, 3474 |
| BstV1I | GCAGC | 7 cut(s) | 89, 412, 535, 563, 3803, 3991, 4811 |
| BstV2I | GAAGAC | 6 cut(s) | 91, 1327, 1389, 3083, 4613, 4928 |
| BstX2I | RGATCY | 5 cut(s) | 1236, 1780, 1943, 3846, 4469 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1247, 1402, 4360, 4559 |
| BstYI | RGATCY | 5 cut(s) | 1236, 1780, 1943, 3846, 4469 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5169 |
| BsuI | GTATCC | 4 cut(s) | 2193, 2257, 2667, 3023 |
| BtgI | CCRYGG | 3 cut(s) | 139, 4007, 5035 |
| BtgZI | GCGATG | 1 cut(s) | 5078 |
| BtrI | CACGTC | 1 cut(s) | 3871 |
| BtsI | GCAGTG | 2 cut(s) | 591, 4344 |
| BtsIMutI | CAGTG | 7 cut(s) | 397, 591, 809, 2463, 2547, 2850, 4344 |
| BveI | ACCTGC | 4 cut(s) | 589, 1542, 3386, 4422 |
| Cac8I | GCNNGC | 5 cut(s) | 405, 1253, 1538, 3936, 4566 |
| CciI | TCATGA | 3 cut(s) | 720, 1227, 2197 |
| CfoI | GCGC | 2 cut(s) | 2236, 2994 |
| CseI | GACGC | 2 cut(s) | 2653, 3329 |
| Csp6I | GTAC | 6 cut(s) | 662, 1806, 1985, 3150, 3762, 5144 |
| CviQI | GTAC | 6 cut(s) | 662, 1806, 1985, 3150, 3762, 5144 |
| DraIII | CACNNNGTG | 1 cut(s) | 2911 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 888, 3447 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3290 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 888, 3447 |
| EaeI | YGGCCR | 2 cut(s) | 3388, 5089 |
| Eam1104I | CTCTTC | 5 cut(s) | 1431, 2496, 2571, 4958, 4979 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3290 |
| EarI | CTCTTC | 5 cut(s) | 1431, 2496, 2571, 4958, 4979 |
| EciI | GGCGGA | 1 cut(s) | 2648 |
| Ecl136II | GAGCTC | 2 cut(s) | 1195, 3712 |
| Eco147I | AGGCCT | 2 cut(s) | 335, 1045 |
| Eco24I | GRGCYC | 2 cut(s) | 1197, 3714 |
| Eco31I | GGTCTC | 6 cut(s) | 482, 1433, 2525, 2818, 3433, 4579 |
| Eco53kI | GAGCTC | 2 cut(s) | 1195, 3712 |
| Eco57I | CTGAAG | 3 cut(s) | 36, 2439, 3977 |
| Eco72I | CACGTG | 1 cut(s) | 4067 |
| Eco81I | CCTNAGG | 1 cut(s) | 5169 |
| EcoICRI | GAGCTC | 2 cut(s) | 1195, 3712 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 51, 1634 |
| EcoO109I | RGGNCCY | 7 cut(s) | 44, 881, 1013, 1417, 2467, 4220, 4295 |
| EcoRII | CCWGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| EcoT22I | ATGCAT | 3 cut(s) | 1297, 1954, 2259 |
| EcoT38I | GRGCYC | 2 cut(s) | 1197, 3714 |
| Esp3I | CGTCTC | 3 cut(s) | 2377, 2726, 4970 |
| FaqI | GGGAC | 7 cut(s) | 759, 950, 1342, 1637, 2085, 2537, 4308 |
| FbaI | TGATCA | 2 cut(s) | 2977, 4144 |
| FblI | GTMKAC | 1 cut(s) | 2514 |
| Fnu4HI | GCNGC | 7 cut(s) | 78, 426, 549, 552, 3792, 3980, 4800 |
| FriOI | GRGCYC | 2 cut(s) | 1197, 3714 |
| Fsp4HI | GCNGC | 7 cut(s) | 78, 426, 549, 552, 3792, 3980, 4800 |
| FspI | TGCGCA | 1 cut(s) | 2235 |
| GlaI | GCGC | 2 cut(s) | 2235, 2993 |
| GluI | GCNGC | 7 cut(s) | 78, 426, 549, 552, 3792, 3980, 4800 |
| GsaI | CCCAGC | 3 cut(s) | 359, 2012, 4806 |
| GsuI | CTGGAG | 6 cut(s) | 576, 2702, 3129, 3287, 3443, 3537 |
| HaeII | RGCGCY | 1 cut(s) | 2995 |
| HapII | CCGG | 1 cut(s) | 1472 |
| HgaI | GACGC | 2 cut(s) | 2653, 3329 |
| HhaI | GCGC | 2 cut(s) | 2236, 2994 |
| Hin1I | GRCGYC | 2 cut(s) | 2074, 3530 |
| Hin6I | GCGC | 2 cut(s) | 2234, 2992 |
| HinP1I | GCGC | 2 cut(s) | 2234, 2992 |
| HincII | GTYRAC | 3 cut(s) | 1993, 3452, 3528 |
| HindII | GTYRAC | 3 cut(s) | 1993, 3452, 3528 |
| HindIII | AAGCTT | 7 cut(s) | 707, 1149, 1789, 3501, 3512, 4758, 4985 |
| HpaI | GTTAAC | 1 cut(s) | 1993 |
| HpaII | CCGG | 1 cut(s) | 1472 |
| HphI | GGTGA | 7 cut(s) | 570, 1446, 2156, 2308, 4538, 4692, 5095 |
| HpyCH4III | ACNGT | 8 cut(s) | 34, 117, 1706, 2854, 2896, 4258, 4583, 4612 |
| Hsp92I | GRCGYC | 2 cut(s) | 2074, 3530 |
| HspAI | GCGC | 2 cut(s) | 2234, 2992 |
| KpnI | GGTACC | 1 cut(s) | 3765 |
| Ksp22I | TGATCA | 2 cut(s) | 2977, 4144 |
| KspAI | GTTAAC | 1 cut(s) | 1993 |
| LmnI | GCTCC | 7 cut(s) | 560, 1260, 3148, 3608, 3717, 4750, 5039 |
| Lsp1109I | GCAGC | 7 cut(s) | 89, 412, 535, 563, 3803, 3991, 4811 |
| MfeI | CAATTG | 2 cut(s) | 3054, 4823 |
| MflI | RGATCY | 5 cut(s) | 1236, 1780, 1943, 3846, 4469 |
| MhlI | GDGCHC | 9 cut(s) | 616, 809, 1197, 2835, 2886, 3474, 3714, 4072, 4755 |
| MlsI | TGGCCA | 2 cut(s) | 3390, 5091 |
| MluNI | TGGCCA | 2 cut(s) | 3390, 5091 |
| MlyI | GAGTC | 8 cut(s) | 425, 510, 2033, 2560, 2795, 3661, 3931, 4382 |
| MmeI | TCCRAC | 7 cut(s) | 522, 1024, 1083, 1950, 3586, 4728, 4979 |
| Mox20I | TGGCCA | 2 cut(s) | 3390, 5091 |
| Mph1103I | ATGCAT | 3 cut(s) | 1297, 1954, 2259 |
| MroXI | GAANNNNTTC | 2 cut(s) | 350, 4778 |
| MscI | TGGCCA | 2 cut(s) | 3390, 5091 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1400, 3362, 4694, 4790, 5024 |
| Msp20I | TGGCCA | 2 cut(s) | 3390, 5091 |
| MspA1I | CMGCKG | 3 cut(s) | 80, 554, 4802 |
| MspCI | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| MspI | CCGG | 1 cut(s) | 1472 |
| MspR9I | CCNGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| MunI | CAATTG | 2 cut(s) | 3054, 4823 |
| Mva1269I | GAATGC | 5 cut(s) | 1297, 1837, 2869, 4446, 4895 |
| MvaI | CCWGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| NcoI | CCATGG | 3 cut(s) | 139, 4007, 5035 |
| NsbI | TGCGCA | 1 cut(s) | 2235 |
| NsiI | ATGCAT | 3 cut(s) | 1297, 1954, 2259 |
| NspI | RCATGY | 7 cut(s) | 205, 504, 794, 1054, 1540, 3938, 4175 |
| NspV | TTCGAA | 2 cut(s) | 4860, 4915 |
| OliI | CACNNNNGTG | 2 cut(s) | 3362, 5024 |
| PaeI | GCATGC | 2 cut(s) | 1540, 3938 |
| PagI | TCATGA | 3 cut(s) | 720, 1227, 2197 |
| PaqCI | CACCTGC | 1 cut(s) | 589 |
| PceI | AGGCCT | 2 cut(s) | 335, 1045 |
| PciI | ACATGT | 1 cut(s) | 500 |
| PctI | GAATGC | 5 cut(s) | 1297, 1837, 2869, 4446, 4895 |
| PdmI | GAANNNNTTC | 2 cut(s) | 350, 4778 |
| PfeI | GAWTC | 8 cut(s) | 836, 979, 1156, 2313, 2646, 3373, 4048, 4912 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 279, 2622 |
| PfoI | TCCNGGA | 2 cut(s) | 1783, 3021 |
| PkrI | GCNGC | 7 cut(s) | 79, 427, 550, 553, 3793, 3981, 4801 |
| PleI | GAGTC | 8 cut(s) | 424, 510, 2033, 2560, 2795, 3661, 3930, 4382 |
| PmaCI | CACGTG | 1 cut(s) | 4067 |
| PmlI | CACGTG | 1 cut(s) | 4067 |
| PpsI | GAGTC | 8 cut(s) | 424, 510, 2033, 2560, 2795, 3661, 3930, 4382 |
| Ppu21I | YACGTR | 1 cut(s) | 4067 |
| PpuMI | RGGWCCY | 4 cut(s) | 881, 1417, 4220, 4295 |
| PscI | ACATGT | 1 cut(s) | 500 |
| Psp124BI | GAGCTC | 2 cut(s) | 1197, 3714 |
| Psp1406I | AACGTT | 4 cut(s) | 972, 1100, 3104, 5157 |
| Psp5II | RGGWCCY | 4 cut(s) | 881, 1417, 4220, 4295 |
| Psp6I | CCWGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| PspCI | CACGTG | 1 cut(s) | 4067 |
| PspFI | CCCAGC | 3 cut(s) | 355, 2008, 4802 |
| PspGI | CCWGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| PspPPI | RGGWCCY | 4 cut(s) | 881, 1417, 4220, 4295 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1652, 1684, 4975, 5007 |
| PstI | CTGCAG | 4 cut(s) | 79, 301, 553, 586 |
| PsuI | RGATCY | 5 cut(s) | 1236, 1780, 1943, 3846, 4469 |
| PvuII | CAGCTG | 3 cut(s) | 80, 554, 4802 |
| RsaI | GTAC | 6 cut(s) | 663, 1807, 1986, 3151, 3763, 5145 |
| RsaNI | GTAC | 6 cut(s) | 662, 1806, 1985, 3150, 3762, 5144 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1400, 3362, 4694, 4790, 5024 |
| SacI | GAGCTC | 2 cut(s) | 1197, 3714 |
| SatI | GCNGC | 7 cut(s) | 78, 426, 549, 552, 3792, 3980, 4800 |
| SbfI | CCTGCAGG | 1 cut(s) | 301 |
| SchI | GAGTC | 8 cut(s) | 425, 510, 2033, 2560, 2795, 3661, 3931, 4382 |
| ScrFI | CCNGG | 6 cut(s) | 927, 1785, 2465, 3023, 3147, 4980 |
| SdaI | CCTGCAGG | 1 cut(s) | 301 |
| SduI | GDGCHC | 9 cut(s) | 616, 809, 1197, 2835, 2886, 3474, 3714, 4072, 4755 |
| SfcI | CTRYAG | 5 cut(s) | 75, 297, 549, 582, 2923 |
| SfuI | TTCGAA | 2 cut(s) | 4860, 4915 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1400, 3362, 4694, 4790, 5024 |
| SpeI | ACTAGT | 1 cut(s) | 4556 |
| SphI | GCATGC | 2 cut(s) | 1540, 3938 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 301 |
| SseBI | AGGCCT | 2 cut(s) | 335, 1045 |
| SsiI | CCGC | 3 cut(s) | 27, 2613, 2633 |
| SspI | AATATT | 1 cut(s) | 4136 |
| SstI | GAGCTC | 2 cut(s) | 1197, 3714 |
| StuI | AGGCCT | 2 cut(s) | 335, 1045 |
| StyD4I | CCNGG | 6 cut(s) | 925, 1783, 2463, 3021, 3145, 4978 |
| TaaI | ACNGT | 8 cut(s) | 34, 117, 1706, 2854, 2896, 4258, 4583, 4612 |
| TaqI | TCGA | 5 cut(s) | 175, 2139, 3437, 4860, 4915 |
| TatI | WGTACW | 2 cut(s) | 1805, 1984 |
| TfiI | GAWTC | 8 cut(s) | 836, 979, 1156, 2313, 2646, 3373, 4048, 4912 |
| TscAI | CASTG | 7 cut(s) | 397, 591, 809, 2463, 2547, 2857, 4344 |
| TseI | GCWGC | 7 cut(s) | 77, 425, 548, 551, 3791, 3979, 4799 |
| TspGWI | ACGGA | 1 cut(s) | 2398 |
| TspRI | CASTG | 7 cut(s) | 397, 591, 809, 2463, 2547, 2857, 4344 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 279, 2622 |
| Vha464I | CTTAAG | 4 cut(s) | 104, 233, 2083, 3515 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 51, 1634 |
| XapI | RAATTY | 6 cut(s) | 179, 994, 1504, 1761, 3241, 3863 |
| XbaI | TCTAGA | 2 cut(s) | 1820, 4040 |
| XceI | RCATGY | 7 cut(s) | 205, 504, 794, 1054, 1540, 3938, 4175 |
| XmaJI | CCTAGG | 3 cut(s) | 1846, 1891, 4216 |
| XmiI | GTMKAC | 1 cut(s) | 2514 |
| XmnI | GAANNNNTTC | 2 cut(s) | 350, 4778 |
| ZraI | GACGTC | 2 cut(s) | 2075, 3531 |
| Zsp2I | ATGCAT | 3 cut(s) | 1297, 1954, 2259 |