transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 854 - 952 | 9.4e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 879 - 982 | 5.6e-37 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1086 - 1143 | 4.2e-10 | Integrase zinc binding domain |
| rve | PF00665 | 1164 - 1257 | 2.4e-15 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 5 cut(s) | 1456, 2287, 2465, 2520, 4291 |
| AccBSI | CCGCTC | 1 cut(s) | 1108 |
| AccI | GTMKAC | 1 cut(s) | 1907 |
| AccII | CGCG | 2 cut(s) | 97, 3804 |
| AccIII | TCCGGA | 1 cut(s) | 3061 |
| AclWI | GGATC | 6 cut(s) | 38, 575, 3000, 3042, 3203, 3243 |
| AcoI | YGGCCR | 3 cut(s) | 177, 1552, 3781 |
| AcsI | RAATTY | 7 cut(s) | 625, 1145, 1721, 2641, 2819, 3269, 3816 |
| AcyI | GRCGYC | 1 cut(s) | 2667 |
| AfaI | GTAC | 9 cut(s) | 41, 61, 187, 2078, 2418, 2842, 3215, 3258, 3348 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 887, 1804, 2296, 2529 |
| AflII | CTTAAG | 3 cut(s) | 275, 425, 916 |
| AflIII | ACRYGT | 3 cut(s) | 490, 503, 2722 |
| AjnI | CCWGG | 3 cut(s) | 688, 1298, 3783 |
| AleI | CACNNNNGTG | 3 cut(s) | 1249, 2327, 2441 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4149, 4181 |
| Alw21I | GWGCWC | 2 cut(s) | 479, 2070 |
| Alw26I | GTCTC | 3 cut(s) | 86, 762, 3856 |
| AlwI | GGATC | 6 cut(s) | 38, 575, 3000, 3042, 3203, 3243 |
| Aor13HI | TCCGGA | 1 cut(s) | 3061 |
| AoxI | GGCC | 8 cut(s) | 177, 569, 1552, 1556, 1938, 2698, 3368, 3781 |
| ApeKI | GCWGC | 6 cut(s) | 317, 943, 1844, 2870, 3070, 4039 |
| ApoI | RAATTY | 7 cut(s) | 625, 1145, 1721, 2641, 2819, 3269, 3816 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 429, 461 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3057 |
| AspLEI | GCGC | 1 cut(s) | 454 |
| AspS9I | GGNCC | 5 cut(s) | 1258, 1557, 1939, 2698, 3515 |
| AsuC2I | CCSGG | 2 cut(s) | 1263, 4200 |
| AsuII | TTCGAA | 1 cut(s) | 76 |
| AvaII | GGWCC | 2 cut(s) | 1258, 3515 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2832, 2865 |
| BalI | TGGCCA | 2 cut(s) | 179, 3783 |
| BanII | GRGCYC | 1 cut(s) | 2291 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1992, 2024 |
| BbsI | GAAGAC | 2 cut(s) | 177, 2346 |
| Bbv12I | GWGCWC | 2 cut(s) | 479, 2070 |
| BbvI | GCAGC | 6 cut(s) | 329, 955, 1831, 2882, 3082, 4026 |
| BceAI | ACGGC | 2 cut(s) | 120, 2378 |
| BciT130I | CCWGG | 3 cut(s) | 690, 1300, 3785 |
| BciVI | GTATCC | 2 cut(s) | 1674, 2139 |
| BclI | TGATCA | 4 cut(s) | 616, 873, 2016, 4131 |
| BcnI | CCSGG | 2 cut(s) | 1263, 4200 |
| BcoDI | GTCTC | 3 cut(s) | 86, 762, 3856 |
| BfmI | CTRYAG | 3 cut(s) | 1005, 2482, 2778 |
| BfoI | RGCGCY | 1 cut(s) | 455 |
| BfrI | CTTAAG | 3 cut(s) | 275, 425, 916 |
| BfuAI | ACCTGC | 5 cut(s) | 1456, 2287, 2465, 2520, 4291 |
| BfuI | GTATCC | 2 cut(s) | 1674, 2139 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 952, 2362 |
| BglII | AGATCT | 2 cut(s) | 1068, 2410 |
| BisI | GCNGC | 7 cut(s) | 318, 944, 1845, 2871, 3071, 3458, 4040 |
| BlsI | GCNGC | 7 cut(s) | 319, 945, 1846, 2872, 3072, 3459, 4041 |
| Bme1390I | CCNGG | 5 cut(s) | 690, 1263, 1300, 3785, 4200 |
| Bme18I | GGWCC | 2 cut(s) | 1258, 3515 |
| BmgT120I | GGNCC | 5 cut(s) | 1258, 1557, 1939, 2698, 3515 |
| BmiI | GGNNCC | 5 cut(s) | 1260, 1521, 1941, 3096, 3516 |
| BmrFI | CCNGG | 5 cut(s) | 690, 1263, 1300, 3785, 4200 |
| BmrI | ACTGGG | 2 cut(s) | 1662, 2285 |
| BmuI | ACTGGG | 2 cut(s) | 1662, 2285 |
| BpiI | GAAGAC | 2 cut(s) | 177, 2346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2147, 2179 |
| BpmI | CTGGAG | 2 cut(s) | 2616, 3989 |
| Bpu10I | CCTNAGC | 2 cut(s) | 48, 2999 |
| Bpu14I | TTCGAA | 1 cut(s) | 76 |
| BpuMI | CCSGG | 2 cut(s) | 1263, 4200 |
| BsaHI | GRCGYC | 1 cut(s) | 2667 |
| BsaJI | CCNNGG | 5 cut(s) | 1261, 1839, 1862, 2909, 3098 |
| BsaWI | WCCGGW | 2 cut(s) | 3061, 3958 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2039, 2069, 3086, 3116 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 887, 1804, 2296, 2529 |
| Bse118I | RCCGGY | 1 cut(s) | 1554 |
| Bse1I | ACTGG | 2 cut(s) | 1668, 2291 |
| Bse3DI | GCAATG | 1 cut(s) | 2019 |
| BseAI | TCCGGA | 1 cut(s) | 3061 |
| BseBI | CCWGG | 3 cut(s) | 690, 1300, 3785 |
| BseDI | CCNNGG | 5 cut(s) | 1261, 1839, 1862, 2909, 3098 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 887, 1804, 2296, 2529 |
| BseMI | GCAATG | 1 cut(s) | 2019 |
| BseMII | CTCAG | 5 cut(s) | 27, 39, 1730, 2283, 2774 |
| BseNI | ACTGG | 2 cut(s) | 1668, 2291 |
| BseRI | GAGGAG | 8 cut(s) | 720, 723, 1004, 1532, 2060, 2063, 2619, 3044 |
| BseXI | GCAGC | 6 cut(s) | 329, 955, 1831, 2882, 3082, 4026 |
| BsgI | GTGCAG | 3 cut(s) | 1484, 1830, 2315 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 3804 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3415 |
| BshFI | GGCC | 8 cut(s) | 179, 571, 1554, 1558, 1940, 2700, 3370, 3783 |
| BsiEI | CGRYCG | 1 cut(s) | 3415 |
| BsiHKAI | GWGCWC | 2 cut(s) | 479, 2070 |
| BsiSI | CCGG | 6 cut(s) | 1263, 1555, 2126, 3062, 3959, 4199 |
| BslFI | GGGAC | 5 cut(s) | 501, 1115, 1615, 1820, 3528 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 887, 1804, 2296, 2529 |
| BsmAI | GTCTC | 3 cut(s) | 86, 762, 3856 |
| BsmBI | CGTCTC | 1 cut(s) | 86 |
| BsmFI | GGGAC | 5 cut(s) | 501, 1115, 1615, 1820, 3528 |
| BsmI | GAATGC | 4 cut(s) | 332, 904, 2576, 3391 |
| BsnI | GGCC | 8 cut(s) | 179, 571, 1554, 1558, 1940, 2700, 3370, 3783 |
| Bsp119I | TTCGAA | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 479, 2070, 2291 |
| Bsp13I | TCCGGA | 1 cut(s) | 3061 |
| BspANI | GGCC | 8 cut(s) | 179, 571, 1554, 1558, 1940, 2700, 3370, 3783 |
| BspCNI | CTCAG | 5 cut(s) | 28, 40, 1729, 2282, 2773 |
| BspEI | TCCGGA | 1 cut(s) | 3061 |
| BspFNI | CGCG | 2 cut(s) | 97, 3804 |
| BspHI | TCATGA | 3 cut(s) | 1563, 2205, 4120 |
| BspLI | GGNNCC | 5 cut(s) | 1260, 1521, 1941, 3096, 3516 |
| BspMI | ACCTGC | 5 cut(s) | 1456, 2287, 2465, 2520, 4291 |
| BspPI | GGATC | 6 cut(s) | 38, 575, 3000, 3042, 3203, 3243 |
| BspT104I | TTCGAA | 1 cut(s) | 76 |
| BspTI | CTTAAG | 3 cut(s) | 275, 425, 916 |
| BsrBI | CCGCTC | 1 cut(s) | 1108 |
| BsrDI | GCAATG | 1 cut(s) | 2019 |
| BsrFI | RCCGGY | 1 cut(s) | 1554 |
| BsrI | ACTGG | 2 cut(s) | 1668, 2291 |
| BssAI | RCCGGY | 1 cut(s) | 1554 |
| BssECI | CCNNGG | 5 cut(s) | 1261, 1839, 1862, 2909, 3098 |
| BssNI | GRCGYC | 1 cut(s) | 2667 |
| BssT1I | CCWWGG | 1 cut(s) | 3098 |
| Bst2UI | CCWGG | 3 cut(s) | 690, 1300, 3785 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 153, 1509, 4178 |
| BstACI | GRCGYC | 1 cut(s) | 2667 |
| BstAFI | CTTAAG | 3 cut(s) | 275, 425, 916 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3408 |
| BstBI | TTCGAA | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 6 cut(s) | 99, 540, 1311, 1556, 2138, 3177 |
| BstDSI | CCRYGG | 2 cut(s) | 1839, 1862 |
| BstEII | GGTNACC | 1 cut(s) | 3536 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2527 |
| BstFNI | CGCG | 2 cut(s) | 97, 3804 |
| BstH2I | RGCGCY | 1 cut(s) | 455 |
| BstHHI | GCGC | 1 cut(s) | 454 |
| BstMAI | GTCTC | 3 cut(s) | 86, 762, 3856 |
| BstMCI | CGRYCG | 1 cut(s) | 3415 |
| BstNI | CCWGG | 3 cut(s) | 690, 1300, 3785 |
| BstNSI | RCATGY | 5 cut(s) | 494, 507, 2140, 2474, 3309 |
| BstPI | GGTNACC | 1 cut(s) | 3536 |
| BstSCI | CCNGG | 5 cut(s) | 688, 1261, 1298, 3783, 4198 |
| BstSFI | CTRYAG | 3 cut(s) | 1005, 2482, 2778 |
| BstUI | CGCG | 2 cut(s) | 97, 3804 |
| BstV1I | GCAGC | 6 cut(s) | 329, 955, 1831, 2882, 3082, 4026 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 2346 |
| BstX2I | RGATCY | 3 cut(s) | 1068, 2410, 3034 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1288, 3580 |
| BstYI | RGATCY | 3 cut(s) | 1068, 2410, 3034 |
| BsuI | GTATCC | 2 cut(s) | 1674, 2139 |
| BsuRI | GGCC | 8 cut(s) | 179, 571, 1554, 1558, 1940, 2700, 3370, 3783 |
| BtgI | CCRYGG | 2 cut(s) | 1839, 1862 |
| BtgZI | GCGATG | 2 cut(s) | 3696, 4012 |
| BtsI | GCAGTG | 1 cut(s) | 1230 |
| BtsIMutI | CAGTG | 3 cut(s) | 1230, 1675, 2298 |
| BveI | ACCTGC | 5 cut(s) | 1456, 2287, 2465, 2520, 4291 |
| Cac8I | GCNNGC | 6 cut(s) | 99, 540, 1311, 1556, 2138, 3177 |
| CciI | TCATGA | 3 cut(s) | 1563, 2205, 4120 |
| CfoI | GCGC | 1 cut(s) | 454 |
| Cfr10I | RCCGGY | 1 cut(s) | 1554 |
| Cfr13I | GGNCC | 5 cut(s) | 1258, 1557, 1939, 2698, 3515 |
| CseI | GACGC | 5 cut(s) | 103, 421, 791, 1320, 2675 |
| CsiI | ACCWGGT | 1 cut(s) | 1298 |
| Csp6I | GTAC | 9 cut(s) | 40, 60, 186, 2077, 2417, 2841, 3214, 3257, 3347 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 117, 152 |
| CviQI | GTAC | 9 cut(s) | 40, 60, 186, 2077, 2417, 2841, 3214, 3257, 3347 |
| DraI | TTTAAA | 1 cut(s) | 771 |
| EaeI | YGGCCR | 3 cut(s) | 177, 1552, 3781 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 153, 1509, 4178 |
| EarI | CTCTTC | 4 cut(s) | 144, 153, 1509, 4178 |
| Eco130I | CCWWGG | 1 cut(s) | 3098 |
| Eco24I | GRGCYC | 1 cut(s) | 2291 |
| Eco32I | GATATC | 1 cut(s) | 3112 |
| Eco47I | GGWCC | 2 cut(s) | 1258, 3515 |
| Eco91I | GGTNACC | 1 cut(s) | 3536 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2527 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1258, 1939, 3515 |
| EcoO65I | GGTNACC | 1 cut(s) | 3536 |
| EcoRII | CCWGG | 3 cut(s) | 688, 1298, 3783 |
| EcoRV | GATATC | 1 cut(s) | 3112 |
| EcoT14I | CCWWGG | 1 cut(s) | 3098 |
| EcoT22I | ATGCAT | 6 cut(s) | 1432, 1750, 2142, 3307, 3391, 3877 |
| EcoT38I | GRGCYC | 1 cut(s) | 2291 |
| ErhI | CCWWGG | 1 cut(s) | 3098 |
| Esp3I | CGTCTC | 1 cut(s) | 86 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1041, 1073, 1055, 1087, 4129, 4161 |
| FaqI | GGGAC | 5 cut(s) | 501, 1115, 1615, 1820, 3528 |
| FauI | CCCGC | 2 cut(s) | 598, 689 |
| FbaI | TGATCA | 4 cut(s) | 616, 873, 2016, 4131 |
| FblI | GTMKAC | 1 cut(s) | 1907 |
| Fnu4HI | GCNGC | 7 cut(s) | 318, 944, 1845, 2871, 3071, 3458, 4040 |
| FriOI | GRGCYC | 1 cut(s) | 2291 |
| FseI | GGCCGGCC | 1 cut(s) | 1558 |
| Fsp4HI | GCNGC | 7 cut(s) | 318, 944, 1845, 2871, 3071, 3458, 4040 |
| GlaI | GCGC | 1 cut(s) | 453 |
| GluI | GCNGC | 7 cut(s) | 318, 944, 1845, 2871, 3071, 3458, 4040 |
| GsuI | CTGGAG | 2 cut(s) | 2616, 3989 |
| HaeII | RGCGCY | 1 cut(s) | 455 |
| HaeIII | GGCC | 8 cut(s) | 179, 571, 1554, 1558, 1940, 2700, 3370, 3783 |
| HapII | CCGG | 6 cut(s) | 1263, 1555, 2126, 3062, 3959, 4199 |
| HgaI | GACGC | 5 cut(s) | 103, 421, 791, 1320, 2675 |
| HhaI | GCGC | 1 cut(s) | 454 |
| Hin1I | GRCGYC | 1 cut(s) | 2667 |
| Hin6I | GCGC | 1 cut(s) | 452 |
| HinP1I | GCGC | 1 cut(s) | 452 |
| HincII | GTYRAC | 4 cut(s) | 815, 2607, 3118, 3422 |
| HindII | GTYRAC | 4 cut(s) | 815, 2607, 3118, 3422 |
| HindIII | AAGCTT | 5 cut(s) | 1636, 2580, 2714, 3055, 3173 |
| HpaI | GTTAAC | 1 cut(s) | 2607 |
| HpaII | CCGG | 6 cut(s) | 1263, 1555, 2126, 3062, 3959, 4199 |
| Hpy166II | GTNNAC | 8 cut(s) | 62, 815, 1099, 1382, 1908, 2607, 3118, 3422 |
| Hpy8I | GTNNAC | 8 cut(s) | 62, 815, 1099, 1382, 1908, 2607, 3118, 3422 |
| Hpy99I | CGWCG | 1 cut(s) | 2193 |
| HpyCH4IV | ACGT | 8 cut(s) | 58, 1644, 2188, 2367, 2419, 2704, 2724, 3567 |
| HpySE526I | ACGT | 8 cut(s) | 58, 1644, 2188, 2367, 2419, 2704, 2724, 3567 |
| Hsp92I | GRCGYC | 1 cut(s) | 2667 |
| HspAI | GCGC | 1 cut(s) | 452 |
| Kpn2I | TCCGGA | 1 cut(s) | 3061 |
| KroI | GCCGGC | 1 cut(s) | 1554 |
| KroNI | GCCGGC | 1 cut(s) | 1556 |
| Ksp22I | TGATCA | 4 cut(s) | 616, 873, 2016, 4131 |
| KspAI | GTTAAC | 1 cut(s) | 2607 |
| Lsp1109I | GCAGC | 6 cut(s) | 329, 955, 1831, 2882, 3082, 4026 |
| MabI | ACCWGGT | 1 cut(s) | 1298 |
| MaeII | ACGT | 8 cut(s) | 58, 1644, 2188, 2367, 2419, 2704, 2724, 3567 |
| MbiI | CCGCTC | 1 cut(s) | 1108 |
| MfeI | CAATTG | 3 cut(s) | 3239, 3909, 4043 |
| MflI | RGATCY | 3 cut(s) | 1068, 2410, 3034 |
| MhlI | GDGCHC | 3 cut(s) | 479, 2070, 2291 |
| MlsI | TGGCCA | 2 cut(s) | 179, 3783 |
| MluNI | TGGCCA | 2 cut(s) | 179, 3783 |
| MlyI | GAGTC | 5 cut(s) | 340, 820, 1862, 2740, 3700 |
| MmeI | TCCRAC | 4 cut(s) | 532, 1428, 1485, 2022 |
| Mox20I | TGGCCA | 2 cut(s) | 179, 3783 |
| Mph1103I | ATGCAT | 6 cut(s) | 1432, 1750, 2142, 3307, 3391, 3877 |
| MroI | TCCGGA | 1 cut(s) | 3061 |
| MroNI | GCCGGC | 1 cut(s) | 1554 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3057 |
| MscI | TGGCCA | 2 cut(s) | 179, 3783 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1249, 1286, 2327, 2441, 3300 |
| Msp20I | TGGCCA | 2 cut(s) | 179, 3783 |
| MspCI | CTTAAG | 3 cut(s) | 275, 425, 916 |
| MspI | CCGG | 6 cut(s) | 1263, 1555, 2126, 3062, 3959, 4199 |
| MspR9I | CCNGG | 5 cut(s) | 690, 1263, 1300, 3785, 4200 |
| MunI | CAATTG | 3 cut(s) | 3239, 3909, 4043 |
| Mva1269I | GAATGC | 4 cut(s) | 332, 904, 2576, 3391 |
| MvaI | CCWGG | 3 cut(s) | 690, 1300, 3785 |
| MvnI | CGCG | 2 cut(s) | 97, 3804 |
| NaeI | GCCGGC | 1 cut(s) | 1556 |
| NciI | CCSGG | 2 cut(s) | 1263, 4200 |
| NgoMIV | GCCGGC | 1 cut(s) | 1554 |
| NlaIV | GGNNCC | 5 cut(s) | 1260, 1521, 1941, 3096, 3516 |
| NmuCI | GTSAC | 7 cut(s) | 420, 910, 1854, 2663, 3692, 3918, 3950 |
| NsiI | ATGCAT | 6 cut(s) | 1432, 1750, 2142, 3307, 3391, 3877 |
| NspI | RCATGY | 5 cut(s) | 494, 507, 2140, 2474, 3309 |
| NspV | TTCGAA | 1 cut(s) | 76 |
| OliI | CACNNNNGTG | 3 cut(s) | 1249, 2327, 2441 |
| PaeI | GCATGC | 1 cut(s) | 2140 |
| PagI | TCATGA | 3 cut(s) | 1563, 2205, 4120 |
| PciI | ACATGT | 2 cut(s) | 490, 503 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3421 |
| PctI | GAATGC | 4 cut(s) | 332, 904, 2576, 3391 |
| PdiI | GCCGGC | 1 cut(s) | 1556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3057 |
| PfeI | GAWTC | 9 cut(s) | 693, 793, 1933, 1969, 2059, 2197, 2490, 3608, 3835 |
| PfoI | TCCNGGA | 1 cut(s) | 4198 |
| PkrI | GCNGC | 7 cut(s) | 319, 945, 1846, 2872, 3072, 3459, 4041 |
| Ple19I | CGATCG | 1 cut(s) | 3415 |
| PleI | GAGTC | 5 cut(s) | 340, 819, 1861, 2740, 3699 |
| PpsI | GAGTC | 5 cut(s) | 340, 819, 1861, 2740, 3699 |
| PpuMI | RGGWCCY | 2 cut(s) | 1258, 3515 |
| PscI | ACATGT | 2 cut(s) | 490, 503 |
| Psp5II | RGGWCCY | 2 cut(s) | 1258, 3515 |
| Psp6I | CCWGG | 3 cut(s) | 688, 1298, 3783 |
| PspEI | GGTNACC | 1 cut(s) | 3536 |
| PspGI | CCWGG | 3 cut(s) | 688, 1298, 3783 |
| PspN4I | GGNNCC | 5 cut(s) | 1260, 1521, 1941, 3096, 3516 |
| PspPI | GGNCC | 5 cut(s) | 1258, 1557, 1939, 2698, 3515 |
| PspPPI | RGGWCCY | 2 cut(s) | 1258, 3515 |
| PsuI | RGATCY | 3 cut(s) | 1068, 2410, 3034 |
| PvuI | CGATCG | 1 cut(s) | 3415 |
| RigI | GGCCGGCC | 1 cut(s) | 1558 |
| RsaI | GTAC | 9 cut(s) | 41, 61, 187, 2078, 2418, 2842, 3215, 3258, 3348 |
| RsaNI | GTAC | 9 cut(s) | 40, 60, 186, 2077, 2417, 2841, 3214, 3257, 3347 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1249, 1286, 2327, 2441, 3300 |
| SatI | GCNGC | 7 cut(s) | 318, 944, 1845, 2871, 3071, 3458, 4040 |
| Sau96I | GGNCC | 5 cut(s) | 1258, 1557, 1939, 2698, 3515 |
| SchI | GAGTC | 5 cut(s) | 340, 820, 1862, 2740, 3700 |
| ScrFI | CCNGG | 5 cut(s) | 690, 1263, 1300, 3785, 4200 |
| SduI | GDGCHC | 3 cut(s) | 479, 2070, 2291 |
| SexAI | ACCWGGT | 1 cut(s) | 1298 |
| SfcI | CTRYAG | 3 cut(s) | 1005, 2482, 2778 |
| SfuI | TTCGAA | 1 cut(s) | 76 |
| SinI | GGWCC | 2 cut(s) | 1258, 3515 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1249, 1286, 2327, 2441, 3300 |
| SphI | GCATGC | 1 cut(s) | 2140 |
| StyD4I | CCNGG | 5 cut(s) | 688, 1261, 1298, 3783, 4198 |
| StyI | CCWWGG | 1 cut(s) | 3098 |
| TaiI | ACGT | 8 cut(s) | 61, 1647, 2191, 2370, 2422, 2707, 2727, 3570 |
| TaqI | TCGA | 8 cut(s) | 10, 76, 394, 1620, 2507, 2562, 3489, 3714 |
| TatI | WGTACW | 1 cut(s) | 2076 |
| TauI | GCSGC | 1 cut(s) | 3460 |
| TfiI | GAWTC | 9 cut(s) | 693, 793, 1933, 1969, 2059, 2197, 2490, 3608, 3835 |
| TscAI | CASTG | 3 cut(s) | 1230, 1675, 2298 |
| TseFI | GTSAC | 7 cut(s) | 420, 910, 1854, 2663, 3692, 3918, 3950 |
| TseI | GCWGC | 6 cut(s) | 317, 943, 1844, 2870, 3070, 4039 |
| Tsp45I | GTSAC | 7 cut(s) | 420, 910, 1854, 2663, 3692, 3918, 3950 |
| TspGWI | ACGGA | 2 cut(s) | 2051, 3201 |
| TspRI | CASTG | 3 cut(s) | 1230, 1675, 2298 |
| Vha464I | CTTAAG | 3 cut(s) | 275, 425, 916 |
| VpaK11BI | GGWCC | 2 cut(s) | 1258, 3515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2527 |
| XapI | RAATTY | 7 cut(s) | 625, 1145, 1721, 2641, 2819, 3269, 3816 |
| XbaI | TCTAGA | 1 cut(s) | 1868 |
| XceI | RCATGY | 5 cut(s) | 494, 507, 2140, 2474, 3309 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1444 |
| XmiI | GTMKAC | 1 cut(s) | 1907 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3057 |
| Zsp2I | ATGCAT | 6 cut(s) | 1432, 1750, 2142, 3307, 3391, 3877 |