transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 35 - 128 | 4.8e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 394 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 403 |
| AgsI | TTSAA | 3 cut(s) | 76, 578, 629 |
| AluBI | AGCT | 5 cut(s) | 97, 332, 509, 613, 632 |
| AluI | AGCT | 5 cut(s) | 97, 332, 509, 613, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 588 |
| Alw26I | GTCTC | 1 cut(s) | 537 |
| AoxI | GGCC | 3 cut(s) | 128, 249, 394 |
| ApeKI | GCWGC | 1 cut(s) | 632 |
| AspS9I | GGNCC | 2 cut(s) | 128, 468 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| BalI | TGGCCA | 1 cut(s) | 396 |
| BbsI | GAAGAC | 1 cut(s) | 446 |
| Bbv12I | GWGCWC | 1 cut(s) | 588 |
| BbvI | GCAGC | 1 cut(s) | 619 |
| BccI | CCATC | 2 cut(s) | 290, 387 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BcoDI | GTCTC | 1 cut(s) | 537 |
| BfaI | CTAG | 3 cut(s) | 164, 225, 572 |
| BfmI | CTRYAG | 1 cut(s) | 55 |
| BisI | GCNGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 1 cut(s) | 634 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 2 cut(s) | 128, 468 |
| BmiI | GGNNCC | 2 cut(s) | 129, 470 |
| BmsI | GCATC | 2 cut(s) | 211, 475 |
| BpiI | GAAGAC | 1 cut(s) | 446 |
| BpmI | CTGGAG | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 2 cut(s) | 230, 602 |
| Bsa29I | ATCGAT | 2 cut(s) | 24, 28 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 403 |
| Bse3DI | GCAATG | 1 cut(s) | 201 |
| BseCI | ATCGAT | 2 cut(s) | 24, 28 |
| BseGI | GGATG | 2 cut(s) | 379, 534 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BseMI | GCAATG | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 619 |
| Bsh1285I | CGRYCG | 1 cut(s) | 28 |
| BshFI | GGCC | 3 cut(s) | 130, 251, 396 |
| BshVI | ATCGAT | 2 cut(s) | 24, 28 |
| BsiEI | CGRYCG | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 1 cut(s) | 588 |
| BslFI | GGGAC | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BsmAI | GTCTC | 1 cut(s) | 537 |
| BsmFI | GGGAC | 1 cut(s) | 454 |
| BsnI | GGCC | 3 cut(s) | 130, 251, 396 |
| Bsp1286I | GDGCHC | 1 cut(s) | 588 |
| Bsp143I | GATC | 2 cut(s) | 21, 25 |
| BspANI | GGCC | 3 cut(s) | 130, 251, 396 |
| BspDI | ATCGAT | 2 cut(s) | 24, 28 |
| BspLI | GGNNCC | 2 cut(s) | 129, 470 |
| BsrDI | GCAATG | 1 cut(s) | 201 |
| BssMI | GATC | 2 cut(s) | 21, 25 |
| Bst4CI | ACNGT | 1 cut(s) | 445 |
| BstF5I | GGATG | 2 cut(s) | 379, 534 |
| BstKTI | GATC | 2 cut(s) | 24, 28 |
| BstMAI | GTCTC | 1 cut(s) | 537 |
| BstMBI | GATC | 2 cut(s) | 21, 25 |
| BstMCI | CGRYCG | 1 cut(s) | 28 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 338, 494, 599 |
| BstSFI | CTRYAG | 1 cut(s) | 55 |
| BstV1I | GCAGC | 1 cut(s) | 619 |
| BstV2I | GAAGAC | 1 cut(s) | 446 |
| Bsu15I | ATCGAT | 2 cut(s) | 24, 28 |
| BsuRI | GGCC | 3 cut(s) | 130, 251, 396 |
| BsuTUI | ATCGAT | 2 cut(s) | 24, 28 |
| BtsCI | GGATG | 2 cut(s) | 379, 534 |
| BtsIMutI | CAGTG | 2 cut(s) | 298, 450 |
| Cfr13I | GGNCC | 2 cut(s) | 128, 468 |
| ClaI | ATCGAT | 2 cut(s) | 24, 28 |
| DpnI | GATC | 2 cut(s) | 23, 27 |
| DpnII | GATC | 2 cut(s) | 21, 25 |
| DraI | TTTAAA | 1 cut(s) | 328 |
| EaeI | YGGCCR | 1 cut(s) | 394 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaqI | GGGAC | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 1 cut(s) | 633 |
| FokI | GGATG | 2 cut(s) | 366, 541 |
| Fsp4HI | GCNGC | 1 cut(s) | 633 |
| FspBI | CTAG | 3 cut(s) | 164, 225, 572 |
| GluI | GCNGC | 1 cut(s) | 633 |
| GsuI | CTGGAG | 1 cut(s) | 455 |
| HaeIII | GGCC | 3 cut(s) | 130, 251, 396 |
| HinfI | GANTC | 1 cut(s) | 430 |
| Hpy188III | TCNNGA | 3 cut(s) | 85, 434, 553 |
| HpyAV | CCTTC | 2 cut(s) | 147, 482 |
| HpyCH4III | ACNGT | 1 cut(s) | 445 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 338, 494, 599 |
| Kzo9I | GATC | 2 cut(s) | 21, 25 |
| LpnPI | CCDG | 3 cut(s) | 67, 419, 621 |
| Lsp1109I | GCAGC | 1 cut(s) | 619 |
| LweI | GCATC | 2 cut(s) | 211, 475 |
| MaeI | CTAG | 3 cut(s) | 164, 225, 572 |
| MaeIII | GTNAC | 2 cut(s) | 314, 563 |
| MalI | GATC | 2 cut(s) | 23, 27 |
| MboI | GATC | 2 cut(s) | 21, 25 |
| MboII | GAAGA | 1 cut(s) | 451 |
| MhlI | GDGCHC | 1 cut(s) | 588 |
| MlsI | TGGCCA | 1 cut(s) | 396 |
| MluCI | AATT | 5 cut(s) | 228, 285, 420, 542, 616 |
| MluNI | TGGCCA | 1 cut(s) | 396 |
| MnlI | CCTC | 4 cut(s) | 293, 393, 397, 420 |
| Mox20I | TGGCCA | 1 cut(s) | 396 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 396 |
| MseI | TTAA | 3 cut(s) | 327, 423, 615 |
| MslI | CAYNNNNRTG | 3 cut(s) | 164, 480, 527 |
| Msp20I | TGGCCA | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 338, 494, 599 |
| NdeII | GATC | 2 cut(s) | 21, 25 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 470 |
| NmuCI | GTSAC | 1 cut(s) | 563 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 430 |
| PkrI | GCNGC | 1 cut(s) | 634 |
| Ple19I | CGATCG | 1 cut(s) | 28 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 470 |
| PspPI | GGNCC | 2 cut(s) | 128, 468 |
| PvuI | CGATCG | 1 cut(s) | 28 |
| RseI | CAYNNNNRTG | 3 cut(s) | 164, 480, 527 |
| SaqAI | TTAA | 3 cut(s) | 327, 423, 615 |
| SatI | GCNGC | 1 cut(s) | 633 |
| Sau3AI | GATC | 2 cut(s) | 21, 25 |
| Sau96I | GGNCC | 2 cut(s) | 128, 468 |
| SduI | GDGCHC | 1 cut(s) | 588 |
| SetI | ASST | 9 cut(s) | 99, 304, 334, 366, 408, 511, 562, 615, 634 |
| SfaNI | GCATC | 2 cut(s) | 211, 475 |
| SfcI | CTRYAG | 1 cut(s) | 55 |
| SinI | GGWCC | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 164, 480, 527 |
| SmlI | CTYRAG | 2 cut(s) | 245, 581 |
| SmoI | CTYRAG | 2 cut(s) | 245, 581 |
| Sse9I | AATT | 5 cut(s) | 228, 285, 420, 542, 616 |
| SspMI | CTAG | 3 cut(s) | 164, 225, 572 |
| TaaI | ACNGT | 1 cut(s) | 445 |
| TaqI | TCGA | 3 cut(s) | 24, 28, 621 |
| TasI | AATT | 5 cut(s) | 228, 285, 420, 542, 616 |
| TfiI | GAWTC | 1 cut(s) | 430 |
| Tru1I | TTAA | 3 cut(s) | 327, 423, 615 |
| Tru9I | TTAA | 3 cut(s) | 327, 423, 615 |
| TscAI | CASTG | 2 cut(s) | 298, 450 |
| TseFI | GTSAC | 1 cut(s) | 563 |
| TseI | GCWGC | 1 cut(s) | 632 |
| Tsp45I | GTSAC | 1 cut(s) | 563 |
| TspDTI | ATGAA | 3 cut(s) | 129, 250, 464 |
| TspGWI | ACGGA | 1 cut(s) | 472 |
| TspRI | CASTG | 2 cut(s) | 298, 450 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XspI | CTAG | 3 cut(s) | 164, 225, 572 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |