Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 414 |
| Acc36I | ACCTGC | 2 cut(s) | 414, 583 |
| AccB1I | GGYRCC | 1 cut(s) | 928 |
| AccII | CGCG | 1 cut(s) | 293 |
| AciI | CCGC | 3 cut(s) | 329, 727, 828 |
| AclWI | GGATC | 6 cut(s) | 51, 431, 444, 513, 589, 606 |
| AfaI | GTAC | 2 cut(s) | 333, 710 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 983, 1220, 1221 |
| AjnI | CCWGG | 3 cut(s) | 358, 955, 982 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 421, 453 |
| Alw21I | GWGCWC | 2 cut(s) | 26, 384 |
| Alw26I | GTCTC | 1 cut(s) | 1056 |
| AlwI | GGATC | 6 cut(s) | 51, 431, 444, 513, 589, 606 |
| Ama87I | CYCGRG | 1 cut(s) | 1279 |
| ApeKI | GCWGC | 3 cut(s) | 91, 271, 893 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 965 |
| AspS9I | GGNCC | 1 cut(s) | 1276 |
| AsuC2I | CCSGG | 1 cut(s) | 1182 |
| AsuHPI | GGTGA | 6 cut(s) | 144, 159, 343, 374, 395, 1297 |
| AvaI | CYCGRG | 1 cut(s) | 1279 |
| AvaII | GGWCC | 1 cut(s) | 1276 |
| BamHI | GGATCC | 1 cut(s) | 436 |
| BanI | GGYRCC | 1 cut(s) | 928 |
| BanII | GRGCYC | 2 cut(s) | 384, 954 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| Bbv12I | GWGCWC | 2 cut(s) | 26, 384 |
| BbvI | GCAGC | 3 cut(s) | 103, 283, 880 |
| BccI | CCATC | 2 cut(s) | 774, 1211 |
| BciT130I | CCWGG | 3 cut(s) | 360, 957, 984 |
| BclI | TGATCA | 1 cut(s) | 468 |
| BcnI | CCSGG | 1 cut(s) | 1182 |
| BcoDI | GTCTC | 1 cut(s) | 1056 |
| BfaI | CTAG | 3 cut(s) | 66, 249, 1299 |
| BfmI | CTRYAG | 1 cut(s) | 576 |
| BfuAI | ACCTGC | 2 cut(s) | 414, 583 |
| BisI | GCNGC | 4 cut(s) | 92, 272, 828, 894 |
| BlsI | GCNGC | 4 cut(s) | 93, 273, 829, 895 |
| BmcAI | AGTACT | 1 cut(s) | 710 |
| Bme1390I | CCNGG | 4 cut(s) | 360, 957, 984, 1182 |
| Bme18I | GGWCC | 1 cut(s) | 1276 |
| BmeT110I | CYCGRG | 1 cut(s) | 1279 |
| BmgT120I | GGNCC | 1 cut(s) | 1276 |
| BmiI | GGNNCC | 4 cut(s) | 438, 930, 1269, 1278 |
| BmrFI | CCNGG | 4 cut(s) | 360, 957, 984, 1182 |
| BmsI | GCATC | 4 cut(s) | 357, 402, 675, 814 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpuEI | CTTGAG | 4 cut(s) | 368, 1076, 1151, 1270 |
| BpuMI | CCSGG | 1 cut(s) | 1182 |
| BsaBI | GATNNNNATC | 1 cut(s) | 441 |
| BsaJI | CCNNGG | 4 cut(s) | 955, 956, 983, 1280 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 831, 861 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 983, 1220, 1221 |
| Bse1I | ACTGG | 1 cut(s) | 1271 |
| Bse8I | GATNNNNATC | 1 cut(s) | 441 |
| BseBI | CCWGG | 3 cut(s) | 360, 957, 984 |
| BseDI | CCNNGG | 4 cut(s) | 955, 956, 983, 1280 |
| BseGI | GGATG | 2 cut(s) | 393, 486 |
| BseJI | GATNNNNATC | 1 cut(s) | 441 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 983, 1220, 1221 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseNI | ACTGG | 1 cut(s) | 1271 |
| BseRI | GAGGAG | 5 cut(s) | 275, 638, 852, 1014, 1267 |
| BseXI | GCAGC | 3 cut(s) | 103, 283, 880 |
| Bsh1236I | CGCG | 1 cut(s) | 293 |
| BshNI | GGYRCC | 1 cut(s) | 928 |
| BsiHKAI | GWGCWC | 2 cut(s) | 26, 384 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1279 |
| BsiSI | CCGG | 1 cut(s) | 1182 |
| BslFI | GGGAC | 2 cut(s) | 729, 1262 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 983, 1220, 1221 |
| BsmAI | GTCTC | 1 cut(s) | 1056 |
| BsmFI | GGGAC | 2 cut(s) | 729, 1262 |
| BsmI | GAATGC | 2 cut(s) | 220, 1237 |
| BsoBI | CYCGRG | 1 cut(s) | 1279 |
| Bsp1286I | GDGCHC | 3 cut(s) | 26, 384, 954 |
| Bsp143I | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| BspACI | CCGC | 3 cut(s) | 329, 727, 828 |
| BspCNI | CTCAG | 1 cut(s) | 424 |
| BspFNI | CGCG | 1 cut(s) | 293 |
| BspHI | TCATGA | 1 cut(s) | 871 |
| BspLI | GGNNCC | 4 cut(s) | 438, 930, 1269, 1278 |
| BspMAI | CTGCAG | 1 cut(s) | 580 |
| BspMI | ACCTGC | 2 cut(s) | 414, 583 |
| BspPI | GGATC | 6 cut(s) | 51, 431, 444, 513, 589, 606 |
| BspQI | GCTCTTC | 1 cut(s) | 261 |
| BspT107I | GGYRCC | 1 cut(s) | 928 |
| BsrI | ACTGG | 1 cut(s) | 1271 |
| BssECI | CCNNGG | 4 cut(s) | 955, 956, 983, 1280 |
| BssMI | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| Bst2UI | CCWGG | 3 cut(s) | 360, 957, 984 |
| Bst4CI | ACNGT | 4 cut(s) | 17, 138, 889, 974 |
| Bst6I | CTCTTC | 4 cut(s) | 244, 261, 655, 1317 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 326, 1009 |
| BstC8I | GCNNGC | 2 cut(s) | 522, 1345 |
| BstDEI | CTNAG | 4 cut(s) | 411, 432, 642, 903 |
| BstF5I | GGATG | 2 cut(s) | 393, 486 |
| BstFNI | CGCG | 1 cut(s) | 293 |
| BstKTI | GATC | 7 cut(s) | 46, 439, 471, 508, 584, 601, 811 |
| BstMAI | GTCTC | 1 cut(s) | 1056 |
| BstMBI | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 326, 644, 1009, 1076, 1304 |
| BstNI | CCWGG | 3 cut(s) | 360, 957, 984 |
| BstNSI | RCATGY | 1 cut(s) | 98 |
| BstSCI | CCNGG | 4 cut(s) | 358, 955, 982, 1180 |
| BstSFI | CTRYAG | 1 cut(s) | 576 |
| BstUI | CGCG | 1 cut(s) | 293 |
| BstV1I | GCAGC | 3 cut(s) | 103, 283, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 2 cut(s) | 436, 581 |
| BstYI | RGATCY | 2 cut(s) | 436, 581 |
| BtsCI | GGATG | 2 cut(s) | 393, 486 |
| BtsI | GCAGTG | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 2 cut(s) | 195, 1278 |
| BveI | ACCTGC | 2 cut(s) | 414, 583 |
| Cac8I | GCNNGC | 2 cut(s) | 522, 1345 |
| CciI | TCATGA | 1 cut(s) | 871 |
| Cfr13I | GGNCC | 1 cut(s) | 1276 |
| CseI | GACGC | 2 cut(s) | 75, 1124 |
| Csp6I | GTAC | 2 cut(s) | 332, 709 |
| CviAII | CATG | 9 cut(s) | 95, 283, 455, 466, 509, 594, 741, 872, 1159 |
| CviQI | GTAC | 2 cut(s) | 332, 709 |
| DdeI | CTNAG | 4 cut(s) | 411, 432, 642, 903 |
| DpnI | GATC | 7 cut(s) | 45, 438, 470, 507, 583, 600, 810 |
| DpnII | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| Eam1104I | CTCTTC | 4 cut(s) | 244, 261, 655, 1317 |
| EarI | CTCTTC | 4 cut(s) | 244, 261, 655, 1317 |
| Ecl136II | GAGCTC | 1 cut(s) | 382 |
| Eco24I | GRGCYC | 2 cut(s) | 384, 954 |
| Eco47I | GGWCC | 1 cut(s) | 1276 |
| Eco53kI | GAGCTC | 1 cut(s) | 382 |
| Eco88I | CYCGRG | 1 cut(s) | 1279 |
| EcoICRI | GAGCTC | 1 cut(s) | 382 |
| EcoRII | CCWGG | 3 cut(s) | 358, 955, 982 |
| EcoT38I | GRGCYC | 2 cut(s) | 384, 954 |
| FaeI | CATG | 9 cut(s) | 98, 286, 458, 469, 512, 597, 744, 875, 1162 |
| FaqI | GGGAC | 2 cut(s) | 729, 1262 |
| FatI | CATG | 9 cut(s) | 94, 282, 454, 465, 508, 593, 740, 871, 1158 |
| FbaI | TGATCA | 1 cut(s) | 468 |
| Fnu4HI | GCNGC | 4 cut(s) | 92, 272, 828, 894 |
| FokI | GGATG | 2 cut(s) | 380, 493 |
| FriOI | GRGCYC | 2 cut(s) | 384, 954 |
| Fsp4HI | GCNGC | 4 cut(s) | 92, 272, 828, 894 |
| FspBI | CTAG | 3 cut(s) | 66, 249, 1299 |
| GluI | GCNGC | 4 cut(s) | 92, 272, 828, 894 |
| HapII | CCGG | 1 cut(s) | 1182 |
| HgaI | GACGC | 2 cut(s) | 75, 1124 |
| Hin1II | CATG | 9 cut(s) | 98, 286, 458, 469, 512, 597, 744, 875, 1162 |
| HincII | GTYRAC | 2 cut(s) | 315, 1148 |
| HindII | GTYRAC | 2 cut(s) | 315, 1148 |
| HindIII | AAGCTT | 2 cut(s) | 373, 612 |
| HinfI | GANTC | 7 cut(s) | 119, 227, 236, 295, 695, 720, 1144 |
| HpaII | CCGG | 1 cut(s) | 1182 |
| HphI | GGTGA | 6 cut(s) | 144, 159, 343, 374, 395, 1297 |
| Hpy166II | GTNNAC | 4 cut(s) | 193, 315, 850, 1148 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 78, 226, 232, 808 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 872, 1055, 1130, 1279 |
| Hpy8I | GTNNAC | 4 cut(s) | 193, 315, 850, 1148 |
| Hpy99I | CGWCG | 1 cut(s) | 91 |
| HpyAV | CCTTC | 8 cut(s) | 174, 212, 301, 407, 536, 540, 785, 1297 |
| HpyCH4III | ACNGT | 4 cut(s) | 17, 138, 889, 974 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 326, 644, 1009, 1076, 1304 |
| HpyF3I | CTNAG | 4 cut(s) | 411, 432, 642, 903 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92II | CATG | 9 cut(s) | 98, 286, 458, 469, 512, 597, 744, 875, 1162 |
| Ksp22I | TGATCA | 1 cut(s) | 468 |
| Kzo9I | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| LguI | GCTCTTC | 1 cut(s) | 261 |
| LmnI | GCTCC | 2 cut(s) | 21, 839 |
| Lsp1109I | GCAGC | 3 cut(s) | 103, 283, 880 |
| LweI | GCATC | 4 cut(s) | 357, 402, 675, 814 |
| MaeI | CTAG | 3 cut(s) | 66, 249, 1299 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MaeIII | GTNAC | 2 cut(s) | 69, 401 |
| MalI | GATC | 7 cut(s) | 45, 438, 470, 507, 583, 600, 810 |
| MboI | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| MboII | GAAGA | 8 cut(s) | 231, 245, 278, 437, 672, 761, 1334, 1339 |
| MflI | RGATCY | 2 cut(s) | 436, 581 |
| MhlI | GDGCHC | 3 cut(s) | 26, 384, 954 |
| MluCI | AATT | 3 cut(s) | 875, 907, 1065 |
| MlyI | GAGTC | 4 cut(s) | 128, 221, 230, 1153 |
| MroXI | GAANNNNTTC | 1 cut(s) | 965 |
| MseI | TTAA | 2 cut(s) | 1064, 1245 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 1 cut(s) | 1343 |
| MspI | CCGG | 1 cut(s) | 1182 |
| MspR9I | CCNGG | 4 cut(s) | 360, 957, 984, 1182 |
| Mva1269I | GAATGC | 2 cut(s) | 220, 1237 |
| MvaI | CCWGG | 3 cut(s) | 360, 957, 984 |
| MvnI | CGCG | 1 cut(s) | 293 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 326, 644, 1009, 1076, 1304 |
| NciI | CCSGG | 1 cut(s) | 1182 |
| NdeII | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| NlaIII | CATG | 9 cut(s) | 98, 286, 458, 469, 512, 597, 744, 875, 1162 |
| NlaIV | GGNNCC | 4 cut(s) | 438, 930, 1269, 1278 |
| NmuCI | GTSAC | 2 cut(s) | 69, 401 |
| NspI | RCATGY | 1 cut(s) | 98 |
| PagI | TCATGA | 1 cut(s) | 871 |
| PaqCI | CACCTGC | 1 cut(s) | 414 |
| PasI | CCCWGGG | 1 cut(s) | 956 |
| PciSI | GCTCTTC | 1 cut(s) | 261 |
| PctI | GAATGC | 2 cut(s) | 220, 1237 |
| PdmI | GAANNNNTTC | 1 cut(s) | 965 |
| PfeI | GAWTC | 3 cut(s) | 295, 695, 720 |
| PflFI | GACNNNGTC | 1 cut(s) | 118 |
| PkrI | GCNGC | 4 cut(s) | 93, 273, 829, 895 |
| PleI | GAGTC | 4 cut(s) | 127, 221, 230, 1152 |
| PpsI | GAGTC | 4 cut(s) | 127, 221, 230, 1152 |
| Psp124BI | GAGCTC | 1 cut(s) | 384 |
| Psp6I | CCWGG | 3 cut(s) | 358, 955, 982 |
| PspGI | CCWGG | 3 cut(s) | 358, 955, 982 |
| PspN4I | GGNNCC | 4 cut(s) | 438, 930, 1269, 1278 |
| PspPI | GGNCC | 1 cut(s) | 1276 |
| PstI | CTGCAG | 1 cut(s) | 580 |
| PsuI | RGATCY | 2 cut(s) | 436, 581 |
| PsyI | GACNNNGTC | 1 cut(s) | 118 |
| PvuII | CAGCTG | 1 cut(s) | 1343 |
| RsaI | GTAC | 2 cut(s) | 333, 710 |
| RsaNI | GTAC | 2 cut(s) | 332, 709 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SacI | GAGCTC | 1 cut(s) | 384 |
| SapI | GCTCTTC | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 1064, 1245 |
| SatI | GCNGC | 4 cut(s) | 92, 272, 828, 894 |
| Sau3AI | GATC | 7 cut(s) | 43, 436, 468, 505, 581, 598, 808 |
| Sau96I | GGNCC | 1 cut(s) | 1276 |
| SbfI | CCTGCAGG | 1 cut(s) | 580 |
| ScaI | AGTACT | 1 cut(s) | 710 |
| SchI | GAGTC | 4 cut(s) | 128, 221, 230, 1153 |
| ScrFI | CCNGG | 4 cut(s) | 360, 957, 984, 1182 |
| SdaI | CCTGCAGG | 1 cut(s) | 580 |
| SduI | GDGCHC | 3 cut(s) | 26, 384, 954 |
| SfaNI | GCATC | 4 cut(s) | 357, 402, 675, 814 |
| SfcI | CTRYAG | 1 cut(s) | 576 |
| SinI | GGWCC | 1 cut(s) | 1276 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| SmlI | CTYRAG | 4 cut(s) | 383, 1055, 1130, 1249 |
| SmoI | CTYRAG | 4 cut(s) | 383, 1055, 1130, 1249 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 580 |
| Sse9I | AATT | 3 cut(s) | 875, 907, 1065 |
| SsiI | CCGC | 3 cut(s) | 329, 727, 828 |
| SspMI | CTAG | 3 cut(s) | 66, 249, 1299 |
| SstI | GAGCTC | 1 cut(s) | 384 |
| StyD4I | CCNGG | 4 cut(s) | 358, 955, 982, 1180 |
| TaaI | ACNGT | 4 cut(s) | 17, 138, 889, 974 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TasI | AATT | 3 cut(s) | 875, 907, 1065 |
| TatI | WGTACW | 1 cut(s) | 708 |
| TauI | GCSGC | 1 cut(s) | 830 |
| TfiI | GAWTC | 3 cut(s) | 295, 695, 720 |
| Tru1I | TTAA | 2 cut(s) | 1064, 1245 |
| Tru9I | TTAA | 2 cut(s) | 1064, 1245 |
| TscAI | CASTG | 2 cut(s) | 195, 1278 |
| TseFI | GTSAC | 2 cut(s) | 69, 401 |
| TseI | GCWGC | 3 cut(s) | 91, 271, 893 |
| Tsp45I | GTSAC | 2 cut(s) | 69, 401 |
| TspDTI | ATGAA | 6 cut(s) | 437, 497, 729, 804, 888, 1329 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| TspRI | CASTG | 2 cut(s) | 195, 1278 |
| Tth111I | GACNNNGTC | 1 cut(s) | 118 |
| VpaK11BI | GGWCC | 1 cut(s) | 1276 |
| XceI | RCATGY | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 965 |
| XspI | CTAG | 3 cut(s) | 66, 249, 1299 |
| ZrmI | AGTACT | 1 cut(s) | 710 |