transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 19 - 112 | 3.1e-20 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 589 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1237 |
| AciI | CCGC | 1 cut(s) | 627 |
| AclI | AACGTT | 1 cut(s) | 253 |
| AclWI | GGATC | 3 cut(s) | 270, 743, 1256 |
| AcsI | RAATTY | 9 cut(s) | 201, 313, 334, 544, 557, 760, 793, 942, 1049 |
| AcvI | CACGTG | 1 cut(s) | 1079 |
| AfaI | GTAC | 5 cut(s) | 68, 196, 634, 683, 755 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 287, 1030, 1202, 1237 |
| AflIII | ACRYGT | 1 cut(s) | 1302 |
| AgsI | TTSAA | 7 cut(s) | 76, 177, 724, 799, 836, 893, 947 |
| AjnI | CCWGG | 3 cut(s) | 467, 1042, 1236 |
| AluBI | AGCT | 4 cut(s) | 173, 866, 1015, 1172 |
| AluI | AGCT | 4 cut(s) | 173, 866, 1015, 1172 |
| AlwI | GGATC | 3 cut(s) | 270, 743, 1256 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1208, 1226 |
| Ama87I | CYCGRG | 1 cut(s) | 773 |
| ApeKI | GCWGC | 6 cut(s) | 146, 584, 595, 1000, 1012, 1192 |
| ApoI | RAATTY | 9 cut(s) | 201, 313, 334, 544, 557, 760, 793, 942, 1049 |
| AseI | ATTAAT | 1 cut(s) | 294 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 234, 379 |
| AsuC2I | CCSGG | 3 cut(s) | 692, 774, 775 |
| AsuHPI | GGTGA | 4 cut(s) | 34, 311, 489, 779 |
| AvaI | CYCGRG | 1 cut(s) | 773 |
| BbrPI | CACGTG | 1 cut(s) | 1079 |
| BbvI | GCAGC | 6 cut(s) | 133, 596, 607, 1012, 1024, 1204 |
| BccI | CCATC | 3 cut(s) | 87, 118, 520 |
| BciT130I | CCWGG | 3 cut(s) | 469, 1044, 1238 |
| BcnI | CCSGG | 3 cut(s) | 692, 774, 775 |
| BfaI | CTAG | 2 cut(s) | 489, 741 |
| BfmI | CTRYAG | 4 cut(s) | 621, 995, 1274, 1286 |
| BfuAI | ACCTGC | 1 cut(s) | 589 |
| BglII | AGATCT | 1 cut(s) | 991 |
| BisI | GCNGC | 7 cut(s) | 147, 585, 596, 627, 1001, 1013, 1193 |
| BlsI | GCNGC | 7 cut(s) | 148, 586, 597, 628, 1002, 1014, 1194 |
| BmcAI | AGTACT | 1 cut(s) | 196 |
| Bme1390I | CCNGG | 6 cut(s) | 469, 692, 774, 775, 1044, 1238 |
| BmeT110I | CYCGRG | 1 cut(s) | 773 |
| BmiI | GGNNCC | 1 cut(s) | 134 |
| BmrFI | CCNGG | 6 cut(s) | 469, 692, 774, 775, 1044, 1238 |
| BmsI | GCATC | 4 cut(s) | 541, 847, 916, 1132 |
| BpmI | CTGGAG | 2 cut(s) | 1007, 1188 |
| BpuEI | CTTGAG | 1 cut(s) | 846 |
| BpuMI | CCSGG | 3 cut(s) | 692, 774, 775 |
| Bsa29I | ATCGAT | 1 cut(s) | 1260 |
| BsaAI | YACGTR | 1 cut(s) | 1079 |
| BsaJI | CCNNGG | 4 cut(s) | 468, 772, 773, 1236 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 521, 551 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 287, 1030, 1202, 1237 |
| Bse1I | ACTGG | 1 cut(s) | 1024 |
| Bse3DI | GCAATG | 1 cut(s) | 1260 |
| BseBI | CCWGG | 3 cut(s) | 469, 1044, 1238 |
| BseCI | ATCGAT | 1 cut(s) | 1260 |
| BseDI | CCNNGG | 4 cut(s) | 468, 772, 773, 1236 |
| BseGI | GGATG | 2 cut(s) | 11, 85 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 287, 1030, 1202, 1237 |
| BseMI | GCAATG | 1 cut(s) | 1260 |
| BseMII | CTCAG | 3 cut(s) | 67, 230, 283 |
| BseNI | ACTGG | 1 cut(s) | 1024 |
| BseXI | GCAGC | 6 cut(s) | 133, 596, 607, 1012, 1024, 1204 |
| BseYI | CCCAGC | 2 cut(s) | 169, 1055 |
| BsgI | GTGCAG | 2 cut(s) | 495, 1211 |
| BshVI | ATCGAT | 1 cut(s) | 1260 |
| BsiHKCI | CYCGRG | 1 cut(s) | 773 |
| BsiSI | CCGG | 2 cut(s) | 692, 774 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 287, 1030, 1202, 1237 |
| BsmI | GAATGC | 1 cut(s) | 719 |
| BsoBI | CYCGRG | 1 cut(s) | 773 |
| Bsp143I | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| BspACI | CCGC | 1 cut(s) | 627 |
| BspCNI | CTCAG | 3 cut(s) | 66, 229, 282 |
| BspDI | ATCGAT | 1 cut(s) | 1260 |
| BspHI | TCATGA | 1 cut(s) | 238 |
| BspLI | GGNNCC | 1 cut(s) | 134 |
| BspMAI | CTGCAG | 2 cut(s) | 1278, 1290 |
| BspMI | ACCTGC | 1 cut(s) | 589 |
| BspPI | GGATC | 3 cut(s) | 270, 743, 1256 |
| BsrDI | GCAATG | 1 cut(s) | 1260 |
| BsrI | ACTGG | 1 cut(s) | 1024 |
| BssECI | CCNNGG | 4 cut(s) | 468, 772, 773, 1236 |
| BssMI | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| Bst2UI | CCWGG | 3 cut(s) | 469, 1044, 1238 |
| Bst4CI | ACNGT | 3 cut(s) | 831, 1139, 1163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1226 |
| BstBAI | YACGTR | 1 cut(s) | 1079 |
| BstC8I | GCNNGC | 1 cut(s) | 402 |
| BstDEI | CTNAG | 6 cut(s) | 53, 140, 216, 269, 345, 912 |
| BstF5I | GGATG | 2 cut(s) | 11, 85 |
| BstKTI | GATC | 8 cut(s) | 265, 751, 787, 814, 907, 994, 1260, 1264 |
| BstMBI | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 401, 1009, 1226 |
| BstNI | CCWGG | 3 cut(s) | 469, 1044, 1238 |
| BstNSI | RCATGY | 2 cut(s) | 568, 701 |
| BstSCI | CCNGG | 6 cut(s) | 467, 690, 772, 773, 1042, 1236 |
| BstSFI | CTRYAG | 4 cut(s) | 621, 995, 1274, 1286 |
| BstV1I | GCAGC | 6 cut(s) | 133, 596, 607, 1012, 1024, 1204 |
| BstX2I | RGATCY | 2 cut(s) | 262, 991 |
| BstYI | RGATCY | 2 cut(s) | 262, 991 |
| Bsu15I | ATCGAT | 1 cut(s) | 1260 |
| BsuTUI | ATCGAT | 1 cut(s) | 1260 |
| BtsCI | GGATG | 2 cut(s) | 11, 85 |
| BtsI | GCAGTG | 2 cut(s) | 395, 1283 |
| BtsIMutI | CAGTG | 3 cut(s) | 395, 1168, 1283 |
| BveI | ACCTGC | 1 cut(s) | 589 |
| Cac8I | GCNNGC | 1 cut(s) | 402 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1208, 1226 |
| CciI | TCATGA | 1 cut(s) | 238 |
| Cfr9I | CCCGGG | 1 cut(s) | 773 |
| ClaI | ATCGAT | 1 cut(s) | 1260 |
| Csp6I | GTAC | 5 cut(s) | 67, 195, 633, 682, 754 |
| CviAII | CATG | 7 cut(s) | 239, 246, 424, 503, 565, 656, 698 |
| CviJI | RGCY | 8 cut(s) | 173, 331, 626, 866, 1015, 1059, 1172, 1195 |
| CviKI_1 | RGCY | 8 cut(s) | 173, 331, 626, 866, 1015, 1059, 1172, 1195 |
| CviQI | GTAC | 5 cut(s) | 67, 195, 633, 682, 754 |
| DdeI | CTNAG | 6 cut(s) | 53, 140, 216, 269, 345, 912 |
| DpnI | GATC | 8 cut(s) | 264, 750, 786, 813, 906, 993, 1259, 1263 |
| DpnII | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| Eco72I | CACGTG | 1 cut(s) | 1079 |
| Eco88I | CYCGRG | 1 cut(s) | 773 |
| EcoRII | CCWGG | 3 cut(s) | 467, 1042, 1236 |
| FaeI | CATG | 7 cut(s) | 242, 249, 427, 506, 568, 659, 701 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 109, 141 |
| FatI | CATG | 7 cut(s) | 238, 245, 423, 502, 564, 655, 697 |
| Fnu4HI | GCNGC | 7 cut(s) | 147, 585, 596, 627, 1001, 1013, 1193 |
| FokI | GGATG | 2 cut(s) | 18, 92 |
| Fsp4HI | GCNGC | 7 cut(s) | 147, 585, 596, 627, 1001, 1013, 1193 |
| FspBI | CTAG | 2 cut(s) | 489, 741 |
| GluI | GCNGC | 7 cut(s) | 147, 585, 596, 627, 1001, 1013, 1193 |
| GsaI | CCCAGC | 2 cut(s) | 173, 1059 |
| GsuI | CTGGAG | 2 cut(s) | 1007, 1188 |
| HapII | CCGG | 2 cut(s) | 692, 774 |
| Hin1II | CATG | 7 cut(s) | 242, 249, 427, 506, 568, 659, 701 |
| HinfI | GANTC | 4 cut(s) | 41, 349, 434, 1223 |
| HpaII | CCGG | 2 cut(s) | 692, 774 |
| HphI | GGTGA | 4 cut(s) | 34, 311, 489, 779 |
| Hpy166II | GTNNAC | 3 cut(s) | 69, 281, 497 |
| Hpy188I | TCNGA | 5 cut(s) | 56, 219, 385, 969, 1210 |
| Hpy188III | TCNNGA | 4 cut(s) | 114, 239, 271, 1330 |
| Hpy8I | GTNNAC | 3 cut(s) | 69, 281, 497 |
| HpyAV | CCTTC | 2 cut(s) | 70, 882 |
| HpyCH4III | ACNGT | 3 cut(s) | 831, 1139, 1163 |
| HpyCH4IV | ACGT | 4 cut(s) | 253, 377, 1078, 1302 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 401, 1009, 1226 |
| HpyF3I | CTNAG | 6 cut(s) | 53, 140, 216, 269, 345, 912 |
| HpySE526I | ACGT | 4 cut(s) | 253, 377, 1078, 1302 |
| Hsp92II | CATG | 7 cut(s) | 242, 249, 427, 506, 568, 659, 701 |
| Kzo9I | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| LmnI | GCTCC | 2 cut(s) | 694, 1169 |
| Lsp1109I | GCAGC | 6 cut(s) | 133, 596, 607, 1012, 1024, 1204 |
| LweI | GCATC | 4 cut(s) | 541, 847, 916, 1132 |
| MaeI | CTAG | 2 cut(s) | 489, 741 |
| MaeII | ACGT | 4 cut(s) | 253, 377, 1078, 1302 |
| MaeIII | GTNAC | 4 cut(s) | 96, 254, 299, 700 |
| MalI | GATC | 8 cut(s) | 264, 750, 786, 813, 906, 993, 1259, 1263 |
| MboI | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| MboII | GAAGA | 1 cut(s) | 544 |
| MfeI | CAATTG | 3 cut(s) | 410, 450, 888 |
| MflI | RGATCY | 2 cut(s) | 262, 991 |
| MlyI | GAGTC | 1 cut(s) | 343 |
| MnlI | CCTC | 5 cut(s) | 20, 320, 365, 471, 510 |
| MroXI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| MseI | TTAA | 6 cut(s) | 155, 206, 294, 357, 714, 822 |
| MslI | CAYNNNNRTG | 2 cut(s) | 20, 308 |
| MspI | CCGG | 2 cut(s) | 692, 774 |
| MspR9I | CCNGG | 6 cut(s) | 469, 692, 774, 775, 1044, 1238 |
| MunI | CAATTG | 3 cut(s) | 410, 450, 888 |
| Mva1269I | GAATGC | 1 cut(s) | 719 |
| MvaI | CCWGG | 3 cut(s) | 469, 1044, 1238 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 401, 1009, 1226 |
| NciI | CCSGG | 3 cut(s) | 692, 774, 775 |
| NdeII | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| NlaIII | CATG | 7 cut(s) | 242, 249, 427, 506, 568, 659, 701 |
| NlaIV | GGNNCC | 1 cut(s) | 134 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NspI | RCATGY | 2 cut(s) | 568, 701 |
| PagI | TCATGA | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 719 |
| PdmI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| PfeI | GAWTC | 3 cut(s) | 41, 434, 1223 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1237 |
| PkrI | GCNGC | 7 cut(s) | 148, 586, 597, 628, 1002, 1014, 1194 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PmaCI | CACGTG | 1 cut(s) | 1079 |
| PmlI | CACGTG | 1 cut(s) | 1079 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| Ppu21I | YACGTR | 1 cut(s) | 1079 |
| PshBI | ATTAAT | 1 cut(s) | 294 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| Psp6I | CCWGG | 3 cut(s) | 467, 1042, 1236 |
| PspCI | CACGTG | 1 cut(s) | 1079 |
| PspFI | CCCAGC | 2 cut(s) | 169, 1055 |
| PspGI | CCWGG | 3 cut(s) | 467, 1042, 1236 |
| PspN4I | GGNNCC | 1 cut(s) | 134 |
| PstI | CTGCAG | 2 cut(s) | 1278, 1290 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1208, 1226 |
| PsuI | RGATCY | 2 cut(s) | 262, 991 |
| RsaI | GTAC | 5 cut(s) | 68, 196, 634, 683, 755 |
| RsaNI | GTAC | 5 cut(s) | 67, 195, 633, 682, 754 |
| RseI | CAYNNNNRTG | 2 cut(s) | 20, 308 |
| SaqAI | TTAA | 6 cut(s) | 155, 206, 294, 357, 714, 822 |
| SatI | GCNGC | 7 cut(s) | 147, 585, 596, 627, 1001, 1013, 1193 |
| Sau3AI | GATC | 8 cut(s) | 262, 748, 784, 811, 904, 991, 1257, 1261 |
| ScaI | AGTACT | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 343 |
| ScrFI | CCNGG | 6 cut(s) | 469, 692, 774, 775, 1044, 1238 |
| SfaNI | GCATC | 4 cut(s) | 541, 847, 916, 1132 |
| SfcI | CTRYAG | 4 cut(s) | 621, 995, 1274, 1286 |
| SmaI | CCCGGG | 1 cut(s) | 775 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 20, 308 |
| SmlI | CTYRAG | 1 cut(s) | 861 |
| SmoI | CTYRAG | 1 cut(s) | 861 |
| SsiI | CCGC | 1 cut(s) | 627 |
| SspI | AATATT | 1 cut(s) | 1110 |
| SspMI | CTAG | 2 cut(s) | 489, 741 |
| StyD4I | CCNGG | 6 cut(s) | 467, 690, 772, 773, 1042, 1236 |
| TaaI | ACNGT | 3 cut(s) | 831, 1139, 1163 |
| TaiI | ACGT | 4 cut(s) | 256, 380, 1081, 1305 |
| TaqI | TCGA | 1 cut(s) | 1260 |
| TatI | WGTACW | 1 cut(s) | 194 |
| TauI | GCSGC | 1 cut(s) | 629 |
| TfiI | GAWTC | 3 cut(s) | 41, 434, 1223 |
| Tru1I | TTAA | 6 cut(s) | 155, 206, 294, 357, 714, 822 |
| Tru9I | TTAA | 6 cut(s) | 155, 206, 294, 357, 714, 822 |
| TscAI | CASTG | 3 cut(s) | 402, 1168, 1283 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| TseI | GCWGC | 6 cut(s) | 146, 584, 595, 1000, 1012, 1192 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 5 cut(s) | 227, 243, 255, 326, 1001 |
| TspGWI | ACGGA | 2 cut(s) | 54, 741 |
| TspMI | CCCGGG | 1 cut(s) | 773 |
| TspRI | CASTG | 3 cut(s) | 402, 1168, 1283 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1237 |
| VspI | ATTAAT | 1 cut(s) | 294 |
| XapI | RAATTY | 9 cut(s) | 201, 313, 334, 544, 557, 760, 793, 942, 1049 |
| XceI | RCATGY | 2 cut(s) | 568, 701 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 798 |
| XmaI | CCCGGG | 1 cut(s) | 773 |
| XmnI | GAANNNNTTC | 2 cut(s) | 234, 379 |
| XspI | CTAG | 2 cut(s) | 489, 741 |
| ZrmI | AGTACT | 1 cut(s) | 196 |