Integrase core domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 9 |
| Acc36I | ACCTGC | 1 cut(s) | 112 |
| AccB1I | GGYRCC | 1 cut(s) | 315 |
| AciI | CCGC | 1 cut(s) | 146 |
| AcyI | GRCGYC | 1 cut(s) | 208 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 219 |
| AflII | CTTAAG | 1 cut(s) | 41 |
| AflIII | ACRYGT | 1 cut(s) | 243 |
| AgsI | TTSAA | 3 cut(s) | 65, 295, 305 |
| AjiI | CACGTC | 1 cut(s) | 244 |
| AoxI | GGCC | 1 cut(s) | 34 |
| AspA2I | CCTAGG | 1 cut(s) | 25 |
| AspS9I | GGNCC | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 290 |
| AvrII | CCTAGG | 1 cut(s) | 25 |
| BanI | GGYRCC | 1 cut(s) | 315 |
| BccI | CCATC | 2 cut(s) | 138, 269 |
| BfaI | CTAG | 2 cut(s) | 26, 32 |
| BfrI | CTTAAG | 1 cut(s) | 41 |
| BfuAI | ACCTGC | 1 cut(s) | 112 |
| BlnI | CCTAGG | 1 cut(s) | 25 |
| BmgBI | CACGTC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 1 cut(s) | 35 |
| BmiI | GGNNCC | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 1 cut(s) | 78 |
| BsaHI | GRCGYC | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 264 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 2 cut(s) | 25, 264 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| BshFI | GGCC | 1 cut(s) | 36 |
| BshNI | GGYRCC | 1 cut(s) | 315 |
| BslFI | GGGAC | 3 cut(s) | 7, 195, 268 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BsmFI | GGGAC | 3 cut(s) | 7, 195, 268 |
| BsnI | GGCC | 1 cut(s) | 36 |
| Bsp1407I | TGTACA | 1 cut(s) | 246 |
| Bsp19I | CCATGG | 1 cut(s) | 264 |
| BspACI | CCGC | 1 cut(s) | 146 |
| BspANI | GGCC | 1 cut(s) | 36 |
| BspLI | GGNNCC | 1 cut(s) | 317 |
| BspMI | ACCTGC | 1 cut(s) | 112 |
| BspT107I | GGYRCC | 1 cut(s) | 315 |
| BspTI | CTTAAG | 1 cut(s) | 41 |
| BsrGI | TGTACA | 1 cut(s) | 246 |
| BssECI | CCNNGG | 2 cut(s) | 25, 264 |
| BssNI | GRCGYC | 1 cut(s) | 208 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 264 |
| BstACI | GRCGYC | 1 cut(s) | 208 |
| BstAFI | CTTAAG | 1 cut(s) | 41 |
| BstAUI | TGTACA | 1 cut(s) | 246 |
| BstDSI | CCRYGG | 1 cut(s) | 264 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 217 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BsuRI | GGCC | 1 cut(s) | 36 |
| BtgI | CCRYGG | 1 cut(s) | 264 |
| BtrI | CACGTC | 1 cut(s) | 244 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BveI | ACCTGC | 1 cut(s) | 112 |
| Cfr13I | GGNCC | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 166, 265, 310 |
| CviJI | RGCY | 2 cut(s) | 36, 308 |
| CviKI_1 | RGCY | 2 cut(s) | 36, 308 |
| CviQI | GTAC | 1 cut(s) | 247 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 35 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 264 |
| ErhI | CCWWGG | 2 cut(s) | 25, 264 |
| FaeI | CATG | 3 cut(s) | 169, 268, 313 |
| FaiI | YATR | 9 cut(s) | 9, 18, 102, 158, 167, 218, 266, 287, 311 |
| FaqI | GGGAC | 3 cut(s) | 7, 195, 268 |
| FatI | CATG | 3 cut(s) | 165, 264, 309 |
| FokI | GGATG | 1 cut(s) | 122 |
| FspBI | CTAG | 2 cut(s) | 26, 32 |
| HaeIII | GGCC | 1 cut(s) | 36 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1I | GRCGYC | 1 cut(s) | 208 |
| Hin1II | CATG | 3 cut(s) | 169, 268, 313 |
| HinfI | GANTC | 2 cut(s) | 173, 256 |
| HphI | GGTGA | 2 cut(s) | 253, 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 247 |
| Hpy188I | TCNGA | 1 cut(s) | 135 |
| Hpy188III | TCNNGA | 1 cut(s) | 302 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 247 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyCH4IV | ACGT | 1 cut(s) | 243 |
| HpyCH4V | TGCA | 2 cut(s) | 121, 227 |
| HpySE526I | ACGT | 1 cut(s) | 243 |
| Hsp92I | GRCGYC | 1 cut(s) | 208 |
| Hsp92II | CATG | 3 cut(s) | 169, 268, 313 |
| LpnPI | CCDG | 2 cut(s) | 107, 156 |
| MaeI | CTAG | 2 cut(s) | 26, 32 |
| MaeII | ACGT | 1 cut(s) | 243 |
| MluCI | AATT | 2 cut(s) | 10, 328 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MmeI | TCCRAC | 1 cut(s) | 305 |
| MnlI | CCTC | 7 cut(s) | 39, 48, 100, 102, 163, 213, 306 |
| MseI | TTAA | 1 cut(s) | 42 |
| MspCI | CTTAAG | 1 cut(s) | 41 |
| NcoI | CCATGG | 1 cut(s) | 264 |
| NlaIII | CATG | 3 cut(s) | 169, 268, 313 |
| NlaIV | GGNNCC | 1 cut(s) | 317 |
| PfeI | GAWTC | 1 cut(s) | 173 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| PsiI | TTATAA | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 1 cut(s) | 317 |
| PspPI | GGNCC | 1 cut(s) | 35 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| Sau96I | GGNCC | 1 cut(s) | 35 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SetI | ASST | 4 cut(s) | 31, 80, 126, 246 |
| SmlI | CTYRAG | 2 cut(s) | 41, 93 |
| SmoI | CTYRAG | 2 cut(s) | 41, 93 |
| Sse9I | AATT | 2 cut(s) | 10, 328 |
| SsiI | CCGC | 1 cut(s) | 146 |
| SspMI | CTAG | 2 cut(s) | 26, 32 |
| StyI | CCWWGG | 2 cut(s) | 25, 264 |
| TaiI | ACGT | 1 cut(s) | 246 |
| TaqI | TCGA | 1 cut(s) | 240 |
| TasI | AATT | 2 cut(s) | 10, 328 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TfiI | GAWTC | 1 cut(s) | 173 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| Vha464I | CTTAAG | 1 cut(s) | 41 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 217 |
| XmaJI | CCTAGG | 1 cut(s) | 25 |
| XspI | CTAG | 2 cut(s) | 26, 32 |