protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 1 - 66 | 6.9e-21 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 2 - 96 | 1.4e-34 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 196 - 253 | 2.4e-12 | Integrase zinc binding domain |
| rve | PF00665 | 274 - 367 | 7.5e-17 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 420 |
| AccI | GTMKAC | 1 cut(s) | 346 |
| AciI | CCGC | 2 cut(s) | 1118, 1416 |
| AclI | AACGTT | 1 cut(s) | 386 |
| AclWI | GGATC | 3 cut(s) | 604, 1027, 1347 |
| AcoI | YGGCCR | 2 cut(s) | 698, 885 |
| AcsI | RAATTY | 2 cut(s) | 161, 1374 |
| AcyI | GRCGYC | 1 cut(s) | 417 |
| AfaI | GTAC | 3 cut(s) | 224, 434, 733 |
| AfeI | AGCGCT | 1 cut(s) | 1609 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| AflIII | ACRYGT | 1 cut(s) | 528 |
| AgeI | ACCGGT | 1 cut(s) | 1288 |
| AgsI | TTSAA | 7 cut(s) | 410, 712, 1231, 1333, 1507, 1604, 1672 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 584, 1493 |
| AjnI | CCWGG | 2 cut(s) | 926, 1528 |
| AluBI | AGCT | 6 cut(s) | 140, 215, 923, 1369, 1384, 1537 |
| AluI | AGCT | 6 cut(s) | 140, 215, 923, 1369, 1384, 1537 |
| Alw21I | GWGCWC | 1 cut(s) | 1680 |
| Alw26I | GTCTC | 4 cut(s) | 558, 571, 904, 1115 |
| AlwI | GGATC | 3 cut(s) | 604, 1027, 1347 |
| Aor51HI | AGCGCT | 1 cut(s) | 1609 |
| AoxI | GGCC | 5 cut(s) | 40, 698, 845, 885, 1212 |
| ApeKI | GCWGC | 1 cut(s) | 212 |
| ApoI | RAATTY | 2 cut(s) | 161, 1374 |
| AseI | ATTAAT | 1 cut(s) | 804 |
| AsiGI | ACCGGT | 1 cut(s) | 1288 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 162, 387, 1475 |
| AspLEI | GCGC | 1 cut(s) | 1610 |
| AspS9I | GGNCC | 5 cut(s) | 653, 845, 1166, 1212, 1556 |
| AsuHPI | GGTGA | 2 cut(s) | 457, 1063 |
| AvaII | GGWCC | 3 cut(s) | 653, 1166, 1556 |
| BalI | TGGCCA | 1 cut(s) | 700 |
| BbsI | GAAGAC | 1 cut(s) | 1163 |
| Bbv12I | GWGCWC | 1 cut(s) | 1680 |
| BbvI | GCAGC | 1 cut(s) | 224 |
| BccI | CCATC | 2 cut(s) | 1007, 1720 |
| BceAI | ACGGC | 4 cut(s) | 17, 269, 872, 1062 |
| BciT130I | CCWGG | 2 cut(s) | 928, 1530 |
| BciVI | GTATCC | 1 cut(s) | 261 |
| BclI | TGATCA | 1 cut(s) | 205 |
| BcoDI | GTCTC | 4 cut(s) | 558, 571, 904, 1115 |
| BfaI | CTAG | 2 cut(s) | 38, 981 |
| BfmI | CTRYAG | 3 cut(s) | 1161, 1216, 1660 |
| BfoI | RGCGCY | 1 cut(s) | 1611 |
| BfuI | GTATCC | 1 cut(s) | 261 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1258 |
| BisI | GCNGC | 1 cut(s) | 213 |
| BlsI | GCNGC | 1 cut(s) | 214 |
| Bme1390I | CCNGG | 2 cut(s) | 928, 1530 |
| Bme18I | GGWCC | 3 cut(s) | 653, 1166, 1556 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 584, 1493 |
| BmgT120I | GGNCC | 5 cut(s) | 653, 845, 1166, 1212, 1556 |
| BmiI | GGNNCC | 5 cut(s) | 31, 426, 846, 1558, 1707 |
| BmrFI | CCNGG | 2 cut(s) | 928, 1530 |
| BmsI | GCATC | 8 cut(s) | 20, 89, 232, 355, 471, 610, 1192, 1711 |
| BpiI | GAAGAC | 1 cut(s) | 1163 |
| BpuEI | CTTGAG | 5 cut(s) | 361, 459, 1040, 1406, 1495 |
| BsaAI | YACGTR | 2 cut(s) | 529, 1681 |
| BsaHI | GRCGYC | 1 cut(s) | 417 |
| BsaI | GGTCTC | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 4 cut(s) | 24, 251, 428, 1528 |
| BsaWI | WCCGGW | 1 cut(s) | 1288 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 555, 585, 1177, 1207 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| Bse118I | RCCGGY | 2 cut(s) | 686, 1288 |
| Bse3DI | GCAATG | 1 cut(s) | 453 |
| BseBI | CCWGG | 2 cut(s) | 928, 1530 |
| BseDI | CCNNGG | 4 cut(s) | 24, 251, 428, 1528 |
| BseGI | GGATG | 6 cut(s) | 11, 247, 370, 486, 1096, 1712 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| BseMI | GCAATG | 1 cut(s) | 453 |
| BseRI | GAGGAG | 2 cut(s) | 1403, 1703 |
| BseXI | GCAGC | 1 cut(s) | 224 |
| BsgI | GTGCAG | 1 cut(s) | 1611 |
| Bsh1285I | CGRYCG | 1 cut(s) | 745 |
| BshFI | GGCC | 5 cut(s) | 42, 700, 847, 887, 1214 |
| BshTI | ACCGGT | 1 cut(s) | 1288 |
| BsiEI | CGRYCG | 1 cut(s) | 745 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1680 |
| BsiSI | CCGG | 2 cut(s) | 687, 1289 |
| BslFI | GGGAC | 1 cut(s) | 572 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| BsmAI | GTCTC | 4 cut(s) | 558, 571, 904, 1115 |
| BsmBI | CGTCTC | 1 cut(s) | 571 |
| BsmFI | GGGAC | 1 cut(s) | 572 |
| BsmI | GAATGC | 1 cut(s) | 1226 |
| BsnI | GGCC | 5 cut(s) | 42, 700, 847, 887, 1214 |
| Bso31I | GGTCTC | 1 cut(s) | 558 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1680 |
| Bsp19I | CCATGG | 1 cut(s) | 24 |
| BspACI | CCGC | 2 cut(s) | 1118, 1416 |
| BspANI | GGCC | 5 cut(s) | 42, 700, 847, 887, 1214 |
| BspHI | TCATGA | 2 cut(s) | 573, 1450 |
| BspLI | GGNNCC | 5 cut(s) | 31, 426, 846, 1558, 1707 |
| BspPI | GGATC | 3 cut(s) | 604, 1027, 1347 |
| BspTNI | GGTCTC | 1 cut(s) | 558 |
| BsrDI | GCAATG | 1 cut(s) | 453 |
| BsrFI | RCCGGY | 2 cut(s) | 686, 1288 |
| BssAI | RCCGGY | 2 cut(s) | 686, 1288 |
| BssECI | CCNNGG | 4 cut(s) | 24, 251, 428, 1528 |
| BssNI | GRCGYC | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 2 cut(s) | 24, 428 |
| Bst2UI | CCWGG | 2 cut(s) | 928, 1530 |
| Bst4CI | ACNGT | 3 cut(s) | 402, 1162, 1699 |
| Bst6I | CTCTTC | 1 cut(s) | 1529 |
| BstACI | GRCGYC | 1 cut(s) | 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 365 |
| BstBAI | YACGTR | 2 cut(s) | 529, 1681 |
| BstC8I | GCNNGC | 2 cut(s) | 460, 520 |
| BstDEI | CTNAG | 4 cut(s) | 136, 154, 186, 861 |
| BstDSI | CCRYGG | 2 cut(s) | 24, 251 |
| BstF5I | GGATG | 6 cut(s) | 11, 247, 370, 486, 1096, 1712 |
| BstH2I | RGCGCY | 1 cut(s) | 1611 |
| BstHHI | GCGC | 1 cut(s) | 1610 |
| BstMAI | GTCTC | 4 cut(s) | 558, 571, 904, 1115 |
| BstMCI | CGRYCG | 1 cut(s) | 745 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 365, 747, 1211, 1258, 1316 |
| BstNI | CCWGG | 2 cut(s) | 928, 1530 |
| BstNSI | RCATGY | 1 cut(s) | 1249 |
| BstSCI | CCNGG | 2 cut(s) | 926, 1528 |
| BstSFI | CTRYAG | 3 cut(s) | 1161, 1216, 1660 |
| BstV1I | GCAGC | 1 cut(s) | 224 |
| BstV2I | GAAGAC | 1 cut(s) | 1163 |
| BstX2I | RGATCY | 1 cut(s) | 1019 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 549 |
| BstYI | RGATCY | 1 cut(s) | 1019 |
| BsuI | GTATCC | 1 cut(s) | 261 |
| BsuRI | GGCC | 5 cut(s) | 42, 700, 847, 887, 1214 |
| BtgI | CCRYGG | 2 cut(s) | 24, 251 |
| BtgZI | GCGATG | 1 cut(s) | 1026 |
| BtsCI | GGATG | 6 cut(s) | 11, 247, 370, 486, 1096, 1712 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 2 cut(s) | 460, 520 |
| CciI | TCATGA | 2 cut(s) | 573, 1450 |
| CfoI | GCGC | 1 cut(s) | 1610 |
| Cfr10I | RCCGGY | 2 cut(s) | 686, 1288 |
| Cfr13I | GGNCC | 5 cut(s) | 653, 845, 1166, 1212, 1556 |
| CseI | GACGC | 2 cut(s) | 524, 725 |
| Csp6I | GTAC | 3 cut(s) | 223, 433, 732 |
| CspAI | ACCGGT | 1 cut(s) | 1288 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 512, 547, 891, 926 |
| CviQI | GTAC | 3 cut(s) | 223, 433, 732 |
| DdeI | CTNAG | 4 cut(s) | 136, 154, 186, 861 |
| DraI | TTTAAA | 1 cut(s) | 792 |
| DriI | GACNNNNNGTC | 2 cut(s) | 584, 1493 |
| EaeI | YGGCCR | 2 cut(s) | 698, 885 |
| Eam1104I | CTCTTC | 1 cut(s) | 1529 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 584, 1493 |
| EarI | CTCTTC | 1 cut(s) | 1529 |
| EciI | GGCGGA | 2 cut(s) | 1133, 1405 |
| Eco130I | CCWWGG | 2 cut(s) | 24, 428 |
| Eco31I | GGTCTC | 1 cut(s) | 558 |
| Eco47I | GGWCC | 3 cut(s) | 653, 1166, 1556 |
| Eco47III | AGCGCT | 1 cut(s) | 1609 |
| EcoO109I | RGGNCCY | 2 cut(s) | 845, 1556 |
| EcoRII | CCWGG | 2 cut(s) | 926, 1528 |
| EcoT14I | CCWWGG | 2 cut(s) | 24, 428 |
| EcoT22I | ATGCAT | 3 cut(s) | 13, 82, 1726 |
| ErhI | CCWWGG | 2 cut(s) | 24, 428 |
| Esp3I | CGTCTC | 1 cut(s) | 571 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 451, 483 |
| FaqI | GGGAC | 1 cut(s) | 572 |
| FauNDI | CATATG | 2 cut(s) | 637, 721 |
| FbaI | TGATCA | 1 cut(s) | 205 |
| FblI | GTMKAC | 1 cut(s) | 346 |
| Fnu4HI | GCNGC | 1 cut(s) | 213 |
| FokI | GGATG | 5 cut(s) | 254, 377, 493, 1083, 1699 |
| Fsp4HI | GCNGC | 1 cut(s) | 213 |
| FspBI | CTAG | 2 cut(s) | 38, 981 |
| GlaI | GCGC | 1 cut(s) | 1609 |
| GluI | GCNGC | 1 cut(s) | 213 |
| HaeII | RGCGCY | 1 cut(s) | 1611 |
| HaeIII | GGCC | 5 cut(s) | 42, 700, 847, 887, 1214 |
| HapII | CCGG | 2 cut(s) | 687, 1289 |
| HgaI | GACGC | 2 cut(s) | 524, 725 |
| HhaI | GCGC | 1 cut(s) | 1610 |
| Hin1I | GRCGYC | 1 cut(s) | 417 |
| Hin6I | GCGC | 1 cut(s) | 1608 |
| HinP1I | GCGC | 1 cut(s) | 1608 |
| HindIII | AAGCTT | 1 cut(s) | 1535 |
| HinfI | GANTC | 4 cut(s) | 536, 938, 1412, 1600 |
| HpaII | CCGG | 2 cut(s) | 687, 1289 |
| HphI | GGTGA | 2 cut(s) | 457, 1063 |
| Hpy166II | GTNNAC | 3 cut(s) | 347, 415, 644 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 205, 382 |
| Hpy8I | GTNNAC | 3 cut(s) | 347, 415, 644 |
| HpyAV | CCTTC | 6 cut(s) | 232, 284, 304, 864, 1171, 1435 |
| HpyCH4III | ACNGT | 3 cut(s) | 402, 1162, 1699 |
| HpyCH4IV | ACGT | 6 cut(s) | 262, 386, 417, 528, 580, 1680 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 365, 747, 1211, 1258, 1316 |
| HpyF3I | CTNAG | 4 cut(s) | 136, 154, 186, 861 |
| HpySE526I | ACGT | 6 cut(s) | 262, 386, 417, 528, 580, 1680 |
| Hsp92I | GRCGYC | 1 cut(s) | 417 |
| HspAI | GCGC | 1 cut(s) | 1608 |
| Ksp22I | TGATCA | 1 cut(s) | 205 |
| LmnI | GCTCC | 4 cut(s) | 29, 1300, 1675, 1705 |
| Lsp1109I | GCAGC | 1 cut(s) | 224 |
| LweI | GCATC | 8 cut(s) | 20, 89, 232, 355, 471, 610, 1192, 1711 |
| MaeI | CTAG | 2 cut(s) | 38, 981 |
| MaeII | ACGT | 6 cut(s) | 262, 386, 417, 528, 580, 1680 |
| MaeIII | GTNAC | 4 cut(s) | 317, 623, 1069, 1681 |
| MboII | GAAGA | 4 cut(s) | 511, 700, 1168, 1516 |
| MflI | RGATCY | 1 cut(s) | 1019 |
| MhlI | GDGCHC | 1 cut(s) | 1680 |
| MlsI | TGGCCA | 1 cut(s) | 700 |
| MluCI | AATT | 6 cut(s) | 109, 161, 448, 763, 812, 1374 |
| MluNI | TGGCCA | 1 cut(s) | 700 |
| MlyI | GAGTC | 1 cut(s) | 1406 |
| MmeI | TCCRAC | 3 cut(s) | 245, 660, 1278 |
| Mox20I | TGGCCA | 1 cut(s) | 700 |
| Mph1103I | ATGCAT | 3 cut(s) | 13, 82, 1726 |
| MroXI | GAANNNNTTC | 3 cut(s) | 162, 387, 1475 |
| MscI | TGGCCA | 1 cut(s) | 700 |
| MseI | TTAA | 6 cut(s) | 791, 804, 1323, 1517, 1629, 1650 |
| MslI | CAYNNNNRTG | 2 cut(s) | 374, 547 |
| Msp20I | TGGCCA | 1 cut(s) | 700 |
| MspI | CCGG | 2 cut(s) | 687, 1289 |
| MspR9I | CCNGG | 2 cut(s) | 928, 1530 |
| Mva1269I | GAATGC | 1 cut(s) | 1226 |
| MvaI | CCWGG | 2 cut(s) | 928, 1530 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 365, 747, 1211, 1258, 1316 |
| NcoI | CCATGG | 1 cut(s) | 24 |
| NdeI | CATATG | 2 cut(s) | 637, 721 |
| NlaIV | GGNNCC | 5 cut(s) | 31, 426, 846, 1558, 1707 |
| NmeAIII | GCCGAG | 1 cut(s) | 510 |
| NmuCI | GTSAC | 3 cut(s) | 317, 623, 1069 |
| NsiI | ATGCAT | 3 cut(s) | 13, 82, 1726 |
| NspI | RCATGY | 1 cut(s) | 1249 |
| PagI | TCATGA | 2 cut(s) | 573, 1450 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 259, 751 |
| PctI | GAATGC | 1 cut(s) | 1226 |
| PdmI | GAANNNNTTC | 3 cut(s) | 162, 387, 1475 |
| PfeI | GAWTC | 3 cut(s) | 536, 938, 1600 |
| PflFI | GACNNNGTC | 1 cut(s) | 569 |
| PinAI | ACCGGT | 1 cut(s) | 1288 |
| PkrI | GCNGC | 1 cut(s) | 214 |
| Ple19I | CGATCG | 1 cut(s) | 745 |
| PleI | GAGTC | 1 cut(s) | 1406 |
| PpsI | GAGTC | 1 cut(s) | 1406 |
| Ppu21I | YACGTR | 2 cut(s) | 529, 1681 |
| PpuMI | RGGWCCY | 1 cut(s) | 1556 |
| PshBI | ATTAAT | 1 cut(s) | 804 |
| Psp1406I | AACGTT | 1 cut(s) | 386 |
| Psp5II | RGGWCCY | 1 cut(s) | 1556 |
| Psp6I | CCWGG | 2 cut(s) | 926, 1528 |
| PspGI | CCWGG | 2 cut(s) | 926, 1528 |
| PspN4I | GGNNCC | 5 cut(s) | 31, 426, 846, 1558, 1707 |
| PspPI | GGNCC | 5 cut(s) | 653, 845, 1166, 1212, 1556 |
| PspPPI | RGGWCCY | 1 cut(s) | 1556 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1525, 1557 |
| PsuI | RGATCY | 1 cut(s) | 1019 |
| PsyI | GACNNNGTC | 1 cut(s) | 569 |
| PvuI | CGATCG | 1 cut(s) | 745 |
| RsaI | GTAC | 3 cut(s) | 224, 434, 733 |
| RsaNI | GTAC | 3 cut(s) | 223, 433, 732 |
| RseI | CAYNNNNRTG | 2 cut(s) | 374, 547 |
| SaqAI | TTAA | 6 cut(s) | 791, 804, 1323, 1517, 1629, 1650 |
| SatI | GCNGC | 1 cut(s) | 213 |
| Sau96I | GGNCC | 5 cut(s) | 653, 845, 1166, 1212, 1556 |
| SchI | GAGTC | 1 cut(s) | 1406 |
| ScrFI | CCNGG | 2 cut(s) | 928, 1530 |
| SduI | GDGCHC | 1 cut(s) | 1680 |
| SfaNI | GCATC | 8 cut(s) | 20, 89, 232, 355, 471, 610, 1192, 1711 |
| SfcI | CTRYAG | 3 cut(s) | 1161, 1216, 1660 |
| SinI | GGWCC | 3 cut(s) | 653, 1166, 1556 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 374, 547 |
| SmlI | CTYRAG | 5 cut(s) | 340, 474, 1055, 1385, 1510 |
| SmoI | CTYRAG | 5 cut(s) | 340, 474, 1055, 1385, 1510 |
| Sse9I | AATT | 6 cut(s) | 109, 161, 448, 763, 812, 1374 |
| SsiI | CCGC | 2 cut(s) | 1118, 1416 |
| SspI | AATATT | 1 cut(s) | 1149 |
| SspMI | CTAG | 2 cut(s) | 38, 981 |
| StyD4I | CCNGG | 2 cut(s) | 926, 1528 |
| StyI | CCWWGG | 2 cut(s) | 24, 428 |
| TaaI | ACNGT | 3 cut(s) | 402, 1162, 1699 |
| TaiI | ACGT | 6 cut(s) | 265, 389, 420, 531, 583, 1683 |
| TaqI | TCGA | 6 cut(s) | 166, 294, 608, 810, 1342, 1479 |
| TasI | AATT | 6 cut(s) | 109, 161, 448, 763, 812, 1374 |
| TatI | WGTACW | 1 cut(s) | 731 |
| TfiI | GAWTC | 3 cut(s) | 536, 938, 1600 |
| Tru1I | TTAA | 6 cut(s) | 791, 804, 1323, 1517, 1629, 1650 |
| Tru9I | TTAA | 6 cut(s) | 791, 804, 1323, 1517, 1629, 1650 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 3 cut(s) | 317, 623, 1069 |
| TseI | GCWGC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 3 cut(s) | 317, 623, 1069 |
| TspDTI | ATGAA | 5 cut(s) | 411, 726, 829, 846, 1416 |
| TspGWI | ACGGA | 1 cut(s) | 1700 |
| TspRI | CASTG | 1 cut(s) | 127 |
| Tth111I | GACNNNGTC | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 3 cut(s) | 653, 1166, 1556 |
| VspI | ATTAAT | 1 cut(s) | 804 |
| XapI | RAATTY | 2 cut(s) | 161, 1374 |
| XceI | RCATGY | 1 cut(s) | 1249 |
| XmiI | GTMKAC | 1 cut(s) | 346 |
| XmnI | GAANNNNTTC | 3 cut(s) | 162, 387, 1475 |
| XspI | CTAG | 2 cut(s) | 38, 981 |
| ZraI | GACGTC | 1 cut(s) | 418 |
| Zsp2I | ATGCAT | 3 cut(s) | 13, 82, 1726 |