transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 104 - 196 | 6.2e-22 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 74, 539 |
| AccIII | TCCGGA | 2 cut(s) | 139, 937 |
| AciI | CCGC | 1 cut(s) | 621 |
| AclWI | GGATC | 1 cut(s) | 218 |
| AcsI | RAATTY | 6 cut(s) | 245, 401, 447, 809, 831, 838 |
| AfaI | GTAC | 3 cut(s) | 553, 632, 855 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 50, 51, 74, 539 |
| AflII | CTTAAG | 1 cut(s) | 406 |
| AflIII | ACRYGT | 2 cut(s) | 180, 816 |
| AgsI | TTSAA | 6 cut(s) | 187, 429, 511, 671, 773, 794 |
| AluBI | AGCT | 6 cut(s) | 104, 425, 790, 872, 915, 929 |
| AluI | AGCT | 6 cut(s) | 104, 425, 790, 872, 915, 929 |
| Alw26I | GTCTC | 1 cut(s) | 3 |
| AlwI | GGATC | 1 cut(s) | 218 |
| Aor13HI | TCCGGA | 2 cut(s) | 139, 937 |
| ApeKI | GCWGC | 5 cut(s) | 709, 859, 872, 888, 947 |
| ApoI | RAATTY | 6 cut(s) | 245, 401, 447, 809, 831, 838 |
| AseI | ATTAAT | 1 cut(s) | 546 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 486 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AsuII | TTCGAA | 1 cut(s) | 165 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 115, 147 |
| BbvI | GCAGC | 4 cut(s) | 721, 859, 871, 900 |
| BccI | CCATC | 2 cut(s) | 339, 370 |
| BclI | TGATCA | 1 cut(s) | 556 |
| BcoDI | GTCTC | 1 cut(s) | 3 |
| BfaI | CTAG | 2 cut(s) | 366, 720 |
| BfmI | CTRYAG | 3 cut(s) | 28, 46, 877 |
| BfrI | CTTAAG | 1 cut(s) | 406 |
| BisI | GCNGC | 5 cut(s) | 710, 860, 873, 889, 948 |
| BlsI | GCNGC | 5 cut(s) | 711, 861, 874, 890, 949 |
| BmcAI | AGTACT | 1 cut(s) | 553 |
| BmiI | GGNNCC | 3 cut(s) | 38, 350, 386 |
| BmsI | GCATC | 2 cut(s) | 248, 793 |
| Bpu14I | TTCGAA | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 1 cut(s) | 577 |
| BsaWI | WCCGGW | 2 cut(s) | 139, 937 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 140, 170 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 50, 51, 74, 539 |
| Bse3DI | GCAATG | 2 cut(s) | 237, 701 |
| BseAI | TCCGGA | 2 cut(s) | 139, 937 |
| BseDI | CCNNGG | 1 cut(s) | 577 |
| BseGI | GGATG | 1 cut(s) | 263 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 50, 51, 74, 539 |
| BseMI | GCAATG | 2 cut(s) | 237, 701 |
| BseMII | CTCAG | 1 cut(s) | 406 |
| BseRI | GAGGAG | 2 cut(s) | 21, 341 |
| BseXI | GCAGC | 4 cut(s) | 721, 859, 871, 900 |
| BsiSI | CCGG | 2 cut(s) | 140, 938 |
| BslFI | GGGAC | 1 cut(s) | 67 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 50, 51, 74, 539 |
| BsmAI | GTCTC | 1 cut(s) | 3 |
| BsmBI | CGTCTC | 1 cut(s) | 3 |
| BsmFI | GGGAC | 1 cut(s) | 67 |
| BsmI | GAATGC | 1 cut(s) | 161 |
| Bsp119I | TTCGAA | 1 cut(s) | 165 |
| Bsp13I | TCCGGA | 2 cut(s) | 139, 937 |
| Bsp1407I | TGTACA | 1 cut(s) | 853 |
| Bsp143I | GATC | 3 cut(s) | 223, 331, 556 |
| BspACI | CCGC | 1 cut(s) | 621 |
| BspCNI | CTCAG | 1 cut(s) | 405 |
| BspEI | TCCGGA | 2 cut(s) | 139, 937 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 3 cut(s) | 38, 350, 386 |
| BspMAI | CTGCAG | 3 cut(s) | 32, 50, 881 |
| BspPI | GGATC | 1 cut(s) | 218 |
| BspT104I | TTCGAA | 1 cut(s) | 165 |
| BspTI | CTTAAG | 1 cut(s) | 406 |
| BsrDI | GCAATG | 2 cut(s) | 237, 701 |
| BsrGI | TGTACA | 1 cut(s) | 853 |
| BssECI | CCNNGG | 1 cut(s) | 577 |
| BssMI | GATC | 3 cut(s) | 223, 331, 556 |
| Bst4CI | ACNGT | 1 cut(s) | 507 |
| Bst6I | CTCTTC | 1 cut(s) | 477 |
| BstAFI | CTTAAG | 1 cut(s) | 406 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 885 |
| BstAUI | TGTACA | 1 cut(s) | 853 |
| BstBI | TTCGAA | 1 cut(s) | 165 |
| BstC8I | GCNNGC | 1 cut(s) | 877 |
| BstDEI | CTNAG | 1 cut(s) | 392 |
| BstF5I | GGATG | 1 cut(s) | 263 |
| BstKTI | GATC | 3 cut(s) | 226, 334, 559 |
| BstMAI | GTCTC | 1 cut(s) | 3 |
| BstMBI | GATC | 3 cut(s) | 223, 331, 556 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 653, 885 |
| BstNSI | RCATGY | 3 cut(s) | 184, 235, 820 |
| BstSFI | CTRYAG | 3 cut(s) | 28, 46, 877 |
| BstV1I | GCAGC | 4 cut(s) | 721, 859, 871, 900 |
| BtsCI | GGATG | 1 cut(s) | 263 |
| BtsI | GCAGTG | 1 cut(s) | 37 |
| BtsIMutI | CAGTG | 2 cut(s) | 37, 400 |
| Cac8I | GCNNGC | 1 cut(s) | 877 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CseI | GACGC | 1 cut(s) | 20 |
| Csp6I | GTAC | 3 cut(s) | 552, 631, 854 |
| CviQI | GTAC | 3 cut(s) | 552, 631, 854 |
| DdeI | CTNAG | 1 cut(s) | 392 |
| DpnI | GATC | 3 cut(s) | 225, 333, 558 |
| DpnII | GATC | 3 cut(s) | 223, 331, 556 |
| Eam1104I | CTCTTC | 1 cut(s) | 477 |
| EarI | CTCTTC | 1 cut(s) | 477 |
| EcoRI | GAATTC | 2 cut(s) | 447, 831 |
| EcoT22I | ATGCAT | 1 cut(s) | 567 |
| Esp3I | CGTCTC | 1 cut(s) | 3 |
| FaqI | GGGAC | 1 cut(s) | 67 |
| FauNDI | CATATG | 1 cut(s) | 754 |
| FbaI | TGATCA | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 5 cut(s) | 710, 860, 873, 889, 948 |
| FokI | GGATG | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 5 cut(s) | 710, 860, 873, 889, 948 |
| FspBI | CTAG | 2 cut(s) | 366, 720 |
| GluI | GCNGC | 5 cut(s) | 710, 860, 873, 889, 948 |
| HapII | CCGG | 2 cut(s) | 140, 938 |
| HgaI | GACGC | 1 cut(s) | 20 |
| HincII | GTYRAC | 1 cut(s) | 80 |
| HindII | GTYRAC | 1 cut(s) | 80 |
| HindIII | AAGCTT | 1 cut(s) | 788 |
| HinfI | GANTC | 3 cut(s) | 92, 293, 433 |
| HpaII | CCGG | 2 cut(s) | 140, 938 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 3 cut(s) | 80, 533, 920 |
| Hpy188I | TCNGA | 3 cut(s) | 327, 453, 578 |
| Hpy188III | TCNNGA | 6 cut(s) | 68, 140, 366, 437, 491, 938 |
| Hpy8I | GTNNAC | 3 cut(s) | 80, 533, 920 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyCH4III | ACNGT | 1 cut(s) | 507 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 653, 885 |
| HpyF3I | CTNAG | 1 cut(s) | 392 |
| Kpn2I | TCCGGA | 2 cut(s) | 139, 937 |
| Ksp22I | TGATCA | 1 cut(s) | 556 |
| Kzo9I | GATC | 3 cut(s) | 223, 331, 556 |
| LmnI | GCTCC | 1 cut(s) | 354 |
| LpnPI | CCDG | 9 cut(s) | 34, 58, 81, 153, 435, 525, 830, 889, 951 |
| Lsp1109I | GCAGC | 4 cut(s) | 721, 859, 871, 900 |
| LweI | GCATC | 2 cut(s) | 248, 793 |
| MaeI | CTAG | 2 cut(s) | 366, 720 |
| MalI | GATC | 3 cut(s) | 225, 333, 558 |
| MboI | GATC | 3 cut(s) | 223, 331, 556 |
| MboII | GAAGA | 1 cut(s) | 494 |
| MfeI | CAATTG | 1 cut(s) | 702 |
| MluCI | AATT | 8 cut(s) | 245, 401, 447, 702, 768, 809, 831, 838 |
| MlyI | GAGTC | 1 cut(s) | 427 |
| MnlI | CCTC | 8 cut(s) | 51, 64, 142, 272, 362, 572, 617, 646 |
| Mph1103I | ATGCAT | 1 cut(s) | 567 |
| MroI | TCCGGA | 2 cut(s) | 139, 937 |
| MroXI | GAANNNNTTC | 1 cut(s) | 486 |
| MseI | TTAA | 5 cut(s) | 98, 251, 300, 407, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 694 |
| MspCI | CTTAAG | 1 cut(s) | 406 |
| MspI | CCGG | 2 cut(s) | 140, 938 |
| MunI | CAATTG | 1 cut(s) | 702 |
| Mva1269I | GAATGC | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 653, 885 |
| NdeI | CATATG | 1 cut(s) | 754 |
| NdeII | GATC | 3 cut(s) | 223, 331, 556 |
| NlaIV | GGNNCC | 3 cut(s) | 38, 350, 386 |
| NsiI | ATGCAT | 1 cut(s) | 567 |
| NspI | RCATGY | 3 cut(s) | 184, 235, 820 |
| NspV | TTCGAA | 1 cut(s) | 165 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PciI | ACATGT | 2 cut(s) | 180, 816 |
| PctI | GAATGC | 1 cut(s) | 161 |
| PdmI | GAANNNNTTC | 1 cut(s) | 486 |
| PfeI | GAWTC | 2 cut(s) | 92, 293 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 74, 539 |
| PkrI | GCNGC | 5 cut(s) | 711, 861, 874, 890, 949 |
| PleI | GAGTC | 1 cut(s) | 427 |
| PpsI | GAGTC | 1 cut(s) | 427 |
| PscI | ACATGT | 2 cut(s) | 180, 816 |
| PshBI | ATTAAT | 1 cut(s) | 546 |
| PspN4I | GGNNCC | 3 cut(s) | 38, 350, 386 |
| PstI | CTGCAG | 3 cut(s) | 32, 50, 881 |
| RsaI | GTAC | 3 cut(s) | 553, 632, 855 |
| RsaNI | GTAC | 3 cut(s) | 552, 631, 854 |
| RseI | CAYNNNNRTG | 1 cut(s) | 694 |
| SaqAI | TTAA | 5 cut(s) | 98, 251, 300, 407, 546 |
| SatI | GCNGC | 5 cut(s) | 710, 860, 873, 889, 948 |
| Sau3AI | GATC | 3 cut(s) | 223, 331, 556 |
| SbfI | CCTGCAGG | 1 cut(s) | 50 |
| ScaI | AGTACT | 1 cut(s) | 553 |
| SchI | GAGTC | 1 cut(s) | 427 |
| SdaI | CCTGCAGG | 1 cut(s) | 50 |
| SfaNI | GCATC | 2 cut(s) | 248, 793 |
| SfcI | CTRYAG | 3 cut(s) | 28, 46, 877 |
| SfuI | TTCGAA | 1 cut(s) | 165 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 694 |
| SmlI | CTYRAG | 1 cut(s) | 406 |
| SmoI | CTYRAG | 1 cut(s) | 406 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 50 |
| Sse9I | AATT | 8 cut(s) | 245, 401, 447, 702, 768, 809, 831, 838 |
| SsiI | CCGC | 1 cut(s) | 621 |
| SspI | AATATT | 2 cut(s) | 190, 268 |
| SspMI | CTAG | 2 cut(s) | 366, 720 |
| TaaI | ACNGT | 1 cut(s) | 507 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TasI | AATT | 8 cut(s) | 245, 401, 447, 702, 768, 809, 831, 838 |
| TatI | WGTACW | 2 cut(s) | 551, 853 |
| TfiI | GAWTC | 2 cut(s) | 92, 293 |
| Tru1I | TTAA | 5 cut(s) | 98, 251, 300, 407, 546 |
| Tru9I | TTAA | 5 cut(s) | 98, 251, 300, 407, 546 |
| TscAI | CASTG | 2 cut(s) | 37, 400 |
| TseI | GCWGC | 5 cut(s) | 709, 859, 872, 888, 947 |
| TspDTI | ATGAA | 6 cut(s) | 84, 194, 479, 495, 507, 606 |
| TspRI | CASTG | 2 cut(s) | 37, 400 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 74, 539 |
| Vha464I | CTTAAG | 1 cut(s) | 406 |
| VspI | ATTAAT | 1 cut(s) | 546 |
| XapI | RAATTY | 6 cut(s) | 245, 401, 447, 809, 831, 838 |
| XbaI | TCTAGA | 1 cut(s) | 365 |
| XceI | RCATGY | 3 cut(s) | 184, 235, 820 |
| XmnI | GAANNNNTTC | 1 cut(s) | 486 |
| XspI | CTAG | 2 cut(s) | 366, 720 |
| ZrmI | AGTACT | 1 cut(s) | 553 |
| Zsp2I | ATGCAT | 1 cut(s) | 567 |