transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 14 - 107 | 6.8e-20 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1651 |
| Acc16I | TGCGCA | 1 cut(s) | 1911 |
| Acc36I | ACCTGC | 1 cut(s) | 1651 |
| AccB1I | GGYRCC | 1 cut(s) | 543 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1969 |
| AccII | CGCG | 1 cut(s) | 1768 |
| AciI | CCGC | 2 cut(s) | 1768, 1982 |
| AclWI | GGATC | 3 cut(s) | 1085, 1448, 1461 |
| AcsI | RAATTY | 4 cut(s) | 134, 409, 799, 1340 |
| AcuI | CTGAAG | 1 cut(s) | 1367 |
| AcvI | CACGTG | 1 cut(s) | 1379 |
| AcyI | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| AfaI | GTAC | 3 cut(s) | 149, 873, 1334 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 272, 477, 480, 778, 1015, 1048, 1104, 1705, 1969 |
| AflII | CTTAAG | 2 cut(s) | 857, 1580 |
| AflIII | ACRYGT | 1 cut(s) | 1376 |
| AgeI | ACCGGT | 1 cut(s) | 403 |
| AjnI | CCWGG | 1 cut(s) | 777 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1450, 1482 |
| Alw21I | GWGCWC | 1 cut(s) | 533 |
| Alw26I | GTCTC | 2 cut(s) | 1363, 1417 |
| AlwI | GGATC | 3 cut(s) | 1085, 1448, 1461 |
| AoxI | GGCC | 4 cut(s) | 499, 683, 1017, 1038 |
| ApeKI | GCWGC | 2 cut(s) | 347, 350 |
| ApoI | RAATTY | 4 cut(s) | 134, 409, 799, 1340 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 935, 967 |
| AseI | ATTAAT | 1 cut(s) | 1533 |
| AsiGI | ACCGGT | 1 cut(s) | 403 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 44, 149, 1650 |
| AspLEI | GCGC | 2 cut(s) | 1768, 1912 |
| AspS9I | GGNCC | 7 cut(s) | 360, 589, 650, 1006, 1018, 1039, 1617 |
| AsuHPI | GGTGA | 9 cut(s) | 289, 418, 734, 1586, 1675, 1707, 1829, 1951, 1984 |
| AvaII | GGWCC | 5 cut(s) | 360, 589, 650, 1006, 1617 |
| AxyI | CCTNAGG | 5 cut(s) | 176, 381, 666, 687, 1632 |
| BaeGI | GKGCMC | 3 cut(s) | 8, 266, 546 |
| BamHI | GGATCC | 1 cut(s) | 1453 |
| BanI | GGYRCC | 1 cut(s) | 543 |
| BauI | CACGAG | 2 cut(s) | 160, 1206 |
| BbrPI | CACGTG | 1 cut(s) | 1379 |
| Bbv12I | GWGCWC | 1 cut(s) | 533 |
| BbvI | GCAGC | 2 cut(s) | 334, 362 |
| BccI | CCATC | 8 cut(s) | 118, 600, 1271, 1677, 1808, 1964, 1979, 2003 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1876, 1910 |
| BciT130I | CCWGG | 1 cut(s) | 779 |
| BciVI | GTATCC | 4 cut(s) | 189, 1638, 1866, 1967 |
| BclI | TGATCA | 2 cut(s) | 553, 1255 |
| BcoDI | GTCTC | 2 cut(s) | 1363, 1417 |
| BfaI | CTAG | 3 cut(s) | 1514, 1520, 1565 |
| BfmI | CTRYAG | 2 cut(s) | 348, 1683 |
| BfrI | CTTAAG | 2 cut(s) | 857, 1580 |
| BfuAI | ACCTGC | 1 cut(s) | 1651 |
| BfuI | GTATCC | 4 cut(s) | 189, 1638, 1866, 1967 |
| BglII | AGATCT | 2 cut(s) | 1272, 1516 |
| BisI | GCNGC | 2 cut(s) | 348, 351 |
| BlpI | GCTNAGC | 1 cut(s) | 852 |
| BlsI | GCNGC | 2 cut(s) | 349, 352 |
| BmcAI | AGTACT | 1 cut(s) | 149 |
| Bme1390I | CCNGG | 1 cut(s) | 779 |
| Bme18I | GGWCC | 5 cut(s) | 360, 589, 650, 1006, 1617 |
| BmgT120I | GGNCC | 7 cut(s) | 360, 589, 650, 1006, 1018, 1039, 1617 |
| BmiI | GGNNCC | 7 cut(s) | 290, 361, 545, 590, 652, 693, 1455 |
| BmrFI | CCNGG | 1 cut(s) | 779 |
| BmrI | ACTGGG | 1 cut(s) | 201 |
| BmsI | GCATC | 5 cut(s) | 334, 750, 1535, 1568, 1915 |
| BmuI | ACTGGG | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 375 |
| Bpu10I | CCTNAGC | 3 cut(s) | 390, 584, 989 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 852 |
| BpuEI | CTTGAG | 3 cut(s) | 460, 522, 792 |
| BsaAI | YACGTR | 1 cut(s) | 1379 |
| BsaHI | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| BsaJI | CCNNGG | 4 cut(s) | 778, 1457, 1803, 1963 |
| BsaWI | WCCGGW | 1 cut(s) | 403 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 272, 477, 480, 778, 1015, 1048, 1104, 1705, 1969 |
| Bse118I | RCCGGY | 1 cut(s) | 403 |
| Bse1I | ACTGG | 1 cut(s) | 196 |
| Bse21I | CCTNAGG | 5 cut(s) | 176, 381, 666, 687, 1632 |
| Bse3DI | GCAATG | 3 cut(s) | 702, 1854, 1935 |
| BseBI | CCWGG | 1 cut(s) | 779 |
| BseDI | CCNNGG | 4 cut(s) | 778, 1457, 1803, 1963 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 272, 477, 480, 778, 1015, 1048, 1104, 1705, 1969 |
| BseMI | GCAATG | 3 cut(s) | 702, 1854, 1935 |
| BseMII | CTCAG | 8 cut(s) | 23, 395, 680, 701, 843, 894, 1125, 1428 |
| BseNI | ACTGG | 1 cut(s) | 196 |
| BseRI | GAGGAG | 2 cut(s) | 463, 1061 |
| BseSI | GKGCMC | 3 cut(s) | 8, 266, 546 |
| BseXI | GCAGC | 2 cut(s) | 334, 362 |
| BseYI | CCCAGC | 1 cut(s) | 154 |
| BsgI | GTGCAG | 1 cut(s) | 1679 |
| Bsh1236I | CGCG | 1 cut(s) | 1768 |
| BshFI | GGCC | 4 cut(s) | 501, 685, 1019, 1040 |
| BshNI | GGYRCC | 1 cut(s) | 543 |
| BshTI | ACCGGT | 1 cut(s) | 403 |
| BsiHKAI | GWGCWC | 1 cut(s) | 533 |
| BsiSI | CCGG | 1 cut(s) | 404 |
| BslFI | GGGAC | 6 cut(s) | 327, 435, 546, 602, 983, 1807 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 272, 477, 480, 778, 1015, 1048, 1104, 1705, 1969 |
| BsmAI | GTCTC | 2 cut(s) | 1363, 1417 |
| BsmFI | GGGAC | 6 cut(s) | 327, 435, 546, 602, 983, 1807 |
| BsmI | GAATGC | 2 cut(s) | 19, 44 |
| BsnI | GGCC | 4 cut(s) | 501, 685, 1019, 1040 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 266, 533, 546 |
| Bsp143I | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 852 |
| Bsp19I | CCATGG | 1 cut(s) | 1803 |
| BspACI | CCGC | 2 cut(s) | 1768, 1982 |
| BspANI | GGCC | 4 cut(s) | 501, 685, 1019, 1040 |
| BspCNI | CTCAG | 8 cut(s) | 22, 394, 679, 700, 844, 895, 1126, 1427 |
| BspFNI | CGCG | 1 cut(s) | 1768 |
| BspHI | TCATGA | 1 cut(s) | 1755 |
| BspLI | GGNNCC | 7 cut(s) | 290, 361, 545, 590, 652, 693, 1455 |
| BspMAI | CTGCAG | 2 cut(s) | 352, 1687 |
| BspMI | ACCTGC | 1 cut(s) | 1651 |
| BspPI | GGATC | 3 cut(s) | 1085, 1448, 1461 |
| BspT107I | GGYRCC | 1 cut(s) | 543 |
| BspTI | CTTAAG | 2 cut(s) | 857, 1580 |
| BsrDI | GCAATG | 3 cut(s) | 702, 1854, 1935 |
| BsrFI | RCCGGY | 1 cut(s) | 403 |
| BsrI | ACTGG | 1 cut(s) | 196 |
| BssAI | RCCGGY | 1 cut(s) | 403 |
| BssECI | CCNNGG | 4 cut(s) | 778, 1457, 1803, 1963 |
| BssMI | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| BssNI | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| BssSI | CACGAG | 2 cut(s) | 160, 1206 |
| BssT1I | CCWWGG | 3 cut(s) | 1457, 1803, 1963 |
| Bst2BI | CACGAG | 2 cut(s) | 160, 1206 |
| Bst2UI | CCWGG | 1 cut(s) | 779 |
| Bst4CI | ACNGT | 2 cut(s) | 172, 1411 |
| BstACI | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| BstAFI | CTTAAG | 2 cut(s) | 857, 1580 |
| BstBAI | YACGTR | 1 cut(s) | 1379 |
| BstDSI | CCRYGG | 1 cut(s) | 1803 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 475, 478, 776 |
| BstFNI | CGCG | 1 cut(s) | 1768 |
| BstHHI | GCGC | 2 cut(s) | 1768, 1912 |
| BstKTI | GATC | 9 cut(s) | 91, 492, 556, 1093, 1165, 1258, 1275, 1456, 1519 |
| BstMAI | GTCTC | 2 cut(s) | 1363, 1417 |
| BstMBI | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 862 |
| BstNI | CCWGG | 1 cut(s) | 779 |
| BstNSI | RCATGY | 1 cut(s) | 1300 |
| BstSCI | CCNGG | 1 cut(s) | 777 |
| BstSFI | CTRYAG | 2 cut(s) | 348, 1683 |
| BstSLI | GKGCMC | 3 cut(s) | 8, 266, 546 |
| BstUI | CGCG | 1 cut(s) | 1768 |
| BstV1I | GCAGC | 2 cut(s) | 334, 362 |
| BstX2I | RGATCY | 3 cut(s) | 1272, 1453, 1516 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 162 |
| BstYI | RGATCY | 3 cut(s) | 1272, 1453, 1516 |
| Bsu36I | CCTNAGG | 5 cut(s) | 176, 381, 666, 687, 1632 |
| BsuI | GTATCC | 4 cut(s) | 189, 1638, 1866, 1967 |
| BsuRI | GGCC | 4 cut(s) | 501, 685, 1019, 1040 |
| BtgI | CCRYGG | 1 cut(s) | 1803 |
| BtsI | GCAGTG | 1 cut(s) | 1977 |
| BtsIMutI | CAGTG | 1 cut(s) | 1977 |
| BveI | ACCTGC | 1 cut(s) | 1651 |
| CciI | TCATGA | 1 cut(s) | 1755 |
| CfoI | GCGC | 2 cut(s) | 1768, 1912 |
| Cfr10I | RCCGGY | 1 cut(s) | 403 |
| Cfr13I | GGNCC | 7 cut(s) | 360, 589, 650, 1006, 1018, 1039, 1617 |
| CseI | GACGC | 3 cut(s) | 246, 1736, 1978 |
| Csp6I | GTAC | 3 cut(s) | 148, 872, 1333 |
| CspAI | ACCGGT | 1 cut(s) | 403 |
| CviQI | GTAC | 3 cut(s) | 148, 872, 1333 |
| DpnI | GATC | 9 cut(s) | 90, 491, 555, 1092, 1164, 1257, 1274, 1455, 1518 |
| DpnII | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| Eco130I | CCWWGG | 3 cut(s) | 1457, 1803, 1963 |
| Eco147I | AGGCCT | 1 cut(s) | 685 |
| Eco32I | GATATC | 1 cut(s) | 900 |
| Eco47I | GGWCC | 5 cut(s) | 360, 589, 650, 1006, 1617 |
| Eco57I | CTGAAG | 1 cut(s) | 1367 |
| Eco72I | CACGTG | 1 cut(s) | 1379 |
| Eco81I | CCTNAGG | 5 cut(s) | 176, 381, 666, 687, 1632 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 475, 478, 776 |
| EcoO109I | RGGNCCY | 1 cut(s) | 360 |
| EcoRI | GAATTC | 1 cut(s) | 134 |
| EcoRII | CCWGG | 1 cut(s) | 777 |
| EcoRV | GATATC | 1 cut(s) | 900 |
| EcoT14I | CCWWGG | 3 cut(s) | 1457, 1803, 1963 |
| EcoT22I | ATGCAT | 2 cut(s) | 1561, 2008 |
| ErhI | CCWWGG | 3 cut(s) | 1457, 1803, 1963 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1638, 1670 |
| FaqI | GGGAC | 6 cut(s) | 327, 435, 546, 602, 983, 1807 |
| FbaI | TGATCA | 2 cut(s) | 553, 1255 |
| Fnu4HI | GCNGC | 2 cut(s) | 348, 351 |
| Fsp4HI | GCNGC | 2 cut(s) | 348, 351 |
| FspBI | CTAG | 3 cut(s) | 1514, 1520, 1565 |
| FspI | TGCGCA | 1 cut(s) | 1911 |
| GlaI | GCGC | 2 cut(s) | 1767, 1911 |
| GluI | GCNGC | 2 cut(s) | 348, 351 |
| GsaI | CCCAGC | 1 cut(s) | 158 |
| GsuI | CTGGAG | 1 cut(s) | 375 |
| HaeIII | GGCC | 4 cut(s) | 501, 685, 1019, 1040 |
| HapII | CCGG | 1 cut(s) | 404 |
| HgaI | GACGC | 3 cut(s) | 246, 1736, 1978 |
| HhaI | GCGC | 2 cut(s) | 1768, 1912 |
| Hin1I | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| Hin6I | GCGC | 2 cut(s) | 1766, 1910 |
| HinP1I | GCGC | 2 cut(s) | 1766, 1910 |
| HincII | GTYRAC | 2 cut(s) | 827, 1294 |
| HindII | GTYRAC | 2 cut(s) | 827, 1294 |
| HindIII | AAGCTT | 2 cut(s) | 914, 1915 |
| HinfI | GANTC | 7 cut(s) | 110, 215, 950, 1250, 1712, 1868, 1901 |
| HpaII | CCGG | 1 cut(s) | 404 |
| HphI | GGTGA | 9 cut(s) | 289, 418, 734, 1586, 1675, 1707, 1829, 1951, 1984 |
| Hpy166II | GTNNAC | 7 cut(s) | 109, 650, 827, 883, 1230, 1294, 1666 |
| Hpy188III | TCNNGA | 8 cut(s) | 59, 244, 326, 420, 493, 1426, 1565, 1756 |
| Hpy8I | GTNNAC | 7 cut(s) | 109, 650, 827, 883, 1230, 1294, 1666 |
| Hpy99I | CGWCG | 1 cut(s) | 262 |
| HpyCH4III | ACNGT | 2 cut(s) | 172, 1411 |
| HpyCH4IV | ACGT | 3 cut(s) | 424, 1378, 1625 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 862 |
| HpySE526I | ACGT | 3 cut(s) | 424, 1378, 1625 |
| Hsp92I | GRCGYC | 3 cut(s) | 257, 1747, 1989 |
| HspAI | GCGC | 2 cut(s) | 1766, 1910 |
| Ksp22I | TGATCA | 2 cut(s) | 553, 1255 |
| Kzo9I | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| LmnI | GCTCC | 4 cut(s) | 230, 394, 609, 712 |
| Lsp1109I | GCAGC | 2 cut(s) | 334, 362 |
| LweI | GCATC | 5 cut(s) | 334, 750, 1535, 1568, 1915 |
| MaeI | CTAG | 3 cut(s) | 1514, 1520, 1565 |
| MaeII | ACGT | 3 cut(s) | 424, 1378, 1625 |
| MaeIII | GTNAC | 5 cut(s) | 166, 425, 833, 1157, 1990 |
| MalI | GATC | 9 cut(s) | 90, 491, 555, 1092, 1164, 1257, 1274, 1455, 1518 |
| MboI | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| MboII | GAAGA | 5 cut(s) | 74, 83, 1408, 1658, 1946 |
| MfeI | CAATTG | 2 cut(s) | 335, 1604 |
| MflI | RGATCY | 3 cut(s) | 1272, 1453, 1516 |
| MhlI | GDGCHC | 4 cut(s) | 8, 266, 533, 546 |
| MlyI | GAGTC | 3 cut(s) | 104, 959, 1706 |
| MmeI | TCCRAC | 2 cut(s) | 321, 587 |
| Mph1103I | ATGCAT | 2 cut(s) | 1561, 2008 |
| MroXI | GAANNNNTTC | 3 cut(s) | 44, 149, 1650 |
| MseI | TTAA | 9 cut(s) | 24, 129, 399, 858, 1185, 1278, 1533, 1581, 1721 |
| MspA1I | CMGCKG | 1 cut(s) | 353 |
| MspCI | CTTAAG | 2 cut(s) | 857, 1580 |
| MspI | CCGG | 1 cut(s) | 404 |
| MspR9I | CCNGG | 1 cut(s) | 779 |
| MunI | CAATTG | 2 cut(s) | 335, 1604 |
| Mva1269I | GAATGC | 2 cut(s) | 19, 44 |
| MvaI | CCWGG | 1 cut(s) | 779 |
| MvnI | CGCG | 1 cut(s) | 1768 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 862 |
| NcoI | CCATGG | 1 cut(s) | 1803 |
| NdeII | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| NlaIV | GGNNCC | 7 cut(s) | 290, 361, 545, 590, 652, 693, 1455 |
| NmuCI | GTSAC | 1 cut(s) | 1990 |
| NsbI | TGCGCA | 1 cut(s) | 1911 |
| NsiI | ATGCAT | 2 cut(s) | 1561, 2008 |
| NspI | RCATGY | 1 cut(s) | 1300 |
| PagI | TCATGA | 1 cut(s) | 1755 |
| PaqCI | CACCTGC | 1 cut(s) | 1651 |
| PceI | AGGCCT | 1 cut(s) | 685 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 430, 1883 |
| PctI | GAATGC | 2 cut(s) | 19, 44 |
| PdmI | GAANNNNTTC | 3 cut(s) | 44, 149, 1650 |
| PfeI | GAWTC | 4 cut(s) | 215, 1250, 1868, 1901 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1969 |
| PinAI | ACCGGT | 1 cut(s) | 403 |
| PkrI | GCNGC | 2 cut(s) | 349, 352 |
| PleI | GAGTC | 3 cut(s) | 104, 958, 1706 |
| PmaCI | CACGTG | 1 cut(s) | 1379 |
| PmlI | CACGTG | 1 cut(s) | 1379 |
| PpsI | GAGTC | 3 cut(s) | 104, 958, 1706 |
| Ppu21I | YACGTR | 1 cut(s) | 1379 |
| PpuMI | RGGWCCY | 1 cut(s) | 360 |
| PshBI | ATTAAT | 1 cut(s) | 1533 |
| Psp5II | RGGWCCY | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 777 |
| PspCI | CACGTG | 1 cut(s) | 1379 |
| PspFI | CCCAGC | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 777 |
| PspN4I | GGNNCC | 7 cut(s) | 290, 361, 545, 590, 652, 693, 1455 |
| PspPI | GGNCC | 7 cut(s) | 360, 589, 650, 1006, 1018, 1039, 1617 |
| PspPPI | RGGWCCY | 1 cut(s) | 360 |
| PstI | CTGCAG | 2 cut(s) | 352, 1687 |
| PsuI | RGATCY | 3 cut(s) | 1272, 1453, 1516 |
| PvuII | CAGCTG | 1 cut(s) | 353 |
| RsaI | GTAC | 3 cut(s) | 149, 873, 1334 |
| RsaNI | GTAC | 3 cut(s) | 148, 872, 1333 |
| SaqAI | TTAA | 9 cut(s) | 24, 129, 399, 858, 1185, 1278, 1533, 1581, 1721 |
| SatI | GCNGC | 2 cut(s) | 348, 351 |
| Sau3AI | GATC | 9 cut(s) | 88, 489, 553, 1090, 1162, 1255, 1272, 1453, 1516 |
| Sau96I | GGNCC | 7 cut(s) | 360, 589, 650, 1006, 1018, 1039, 1617 |
| ScaI | AGTACT | 1 cut(s) | 149 |
| SchI | GAGTC | 3 cut(s) | 104, 959, 1706 |
| ScrFI | CCNGG | 1 cut(s) | 779 |
| SduI | GDGCHC | 4 cut(s) | 8, 266, 533, 546 |
| SfaNI | GCATC | 5 cut(s) | 334, 750, 1535, 1568, 1915 |
| SfcI | CTRYAG | 2 cut(s) | 348, 1683 |
| SinI | GGWCC | 5 cut(s) | 360, 589, 650, 1006, 1617 |
| SmlI | CTYRAG | 5 cut(s) | 475, 537, 807, 857, 1580 |
| SmoI | CTYRAG | 5 cut(s) | 475, 537, 807, 857, 1580 |
| SseBI | AGGCCT | 1 cut(s) | 685 |
| SsiI | CCGC | 2 cut(s) | 1768, 1982 |
| SspMI | CTAG | 3 cut(s) | 1514, 1520, 1565 |
| StuI | AGGCCT | 1 cut(s) | 685 |
| StyD4I | CCNGG | 1 cut(s) | 777 |
| StyI | CCWWGG | 3 cut(s) | 1457, 1803, 1963 |
| TaaI | ACNGT | 2 cut(s) | 172, 1411 |
| TaiI | ACGT | 3 cut(s) | 427, 1381, 1628 |
| TaqI | TCGA | 2 cut(s) | 1812, 1886 |
| TatI | WGTACW | 1 cut(s) | 147 |
| TfiI | GAWTC | 4 cut(s) | 215, 1250, 1868, 1901 |
| Tru1I | TTAA | 9 cut(s) | 24, 129, 399, 858, 1185, 1278, 1533, 1581, 1721 |
| Tru9I | TTAA | 9 cut(s) | 24, 129, 399, 858, 1185, 1278, 1533, 1581, 1721 |
| TscAI | CASTG | 1 cut(s) | 1984 |
| TseFI | GTSAC | 1 cut(s) | 1990 |
| TseI | GCWGC | 2 cut(s) | 347, 350 |
| Tsp45I | GTSAC | 1 cut(s) | 1990 |
| TspGWI | ACGGA | 1 cut(s) | 632 |
| TspRI | CASTG | 1 cut(s) | 1984 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1969 |
| Vha464I | CTTAAG | 2 cut(s) | 857, 1580 |
| VpaK11BI | GGWCC | 5 cut(s) | 360, 589, 650, 1006, 1617 |
| VspI | ATTAAT | 1 cut(s) | 1533 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 475, 478, 776 |
| XapI | RAATTY | 4 cut(s) | 134, 409, 799, 1340 |
| XbaI | TCTAGA | 1 cut(s) | 1564 |
| XceI | RCATGY | 1 cut(s) | 1300 |
| XmnI | GAANNNNTTC | 3 cut(s) | 44, 149, 1650 |
| XspI | CTAG | 3 cut(s) | 1514, 1520, 1565 |
| ZrmI | AGTACT | 1 cut(s) | 149 |
| Zsp2I | ATGCAT | 2 cut(s) | 1561, 2008 |