transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 84 - 175 | 4.4e-22 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1262 |
| Acc16I | TGCGCA | 1 cut(s) | 2049 |
| Acc36I | ACCTGC | 3 cut(s) | 595, 974, 1789 |
| AccB1I | GGYRCC | 4 cut(s) | 1109, 1931, 2126, 2282 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 47 |
| AccBSI | CCGCTC | 1 cut(s) | 224 |
| AccI | GTMKAC | 1 cut(s) | 1176 |
| AciI | CCGC | 4 cut(s) | 224, 590, 1823, 1885 |
| AclI | AACGTT | 2 cut(s) | 903, 2184 |
| AclWI | GGATC | 9 cut(s) | 158, 574, 697, 827, 876, 1195, 1586, 1599, 2120 |
| AcsI | RAATTY | 6 cut(s) | 185, 234, 1461, 1478, 1946, 2054 |
| AcuI | CTGAAG | 2 cut(s) | 266, 2254 |
| AcyI | GRCGYC | 2 cut(s) | 1259, 2127 |
| AdeI | CACNNNGTG | 1 cut(s) | 47 |
| AfaI | GTAC | 1 cut(s) | 1791 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 47, 479, 593, 1522 |
| AflII | CTTAAG | 1 cut(s) | 1999 |
| AjnI | CCWGG | 3 cut(s) | 43, 856, 1594 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 304, 336 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 176, 208 |
| Alw21I | GWGCWC | 2 cut(s) | 916, 1812 |
| Alw26I | GTCTC | 6 cut(s) | 459, 488, 1250, 1266, 1501, 1555 |
| Alw44I | GTGCAC | 1 cut(s) | 912 |
| AlwI | GGATC | 9 cut(s) | 158, 574, 697, 827, 876, 1195, 1586, 1599, 2120 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 560 |
| AoxI | GGCC | 7 cut(s) | 249, 618, 650, 1389, 1398, 1449, 1882 |
| ApaLI | GTGCAC | 1 cut(s) | 912 |
| ApeKI | GCWGC | 3 cut(s) | 77, 80, 554 |
| ApoI | RAATTY | 6 cut(s) | 185, 234, 1461, 1478, 1946, 2054 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 251 |
| AspA2I | CCTAGG | 1 cut(s) | 824 |
| AspLEI | GCGC | 2 cut(s) | 2050, 2129 |
| AspS9I | GGNCC | 4 cut(s) | 618, 651, 679, 1231 |
| AsuHPI | GGTGA | 3 cut(s) | 863, 1543, 1724 |
| AsuII | TTCGAA | 1 cut(s) | 1638 |
| AvaII | GGWCC | 2 cut(s) | 679, 1231 |
| AvrII | CCTAGG | 1 cut(s) | 824 |
| AxyI | CCTNAGG | 3 cut(s) | 796, 1770, 2139 |
| BaeGI | GKGCMC | 1 cut(s) | 916 |
| BamHI | GGATCC | 1 cut(s) | 1591 |
| BanI | GGYRCC | 4 cut(s) | 1109, 1931, 2126, 2282 |
| BanII | GRGCYC | 2 cut(s) | 525, 1812 |
| BbsI | GAAGAC | 1 cut(s) | 125 |
| Bbv12I | GWGCWC | 2 cut(s) | 916, 1812 |
| BbvCI | CCTCAGC | 1 cut(s) | 84 |
| BbvI | GCAGC | 3 cut(s) | 64, 92, 566 |
| BceAI | ACGGC | 2 cut(s) | 1130, 1917 |
| BciT130I | CCWGG | 3 cut(s) | 45, 858, 1596 |
| BciVI | GTATCC | 2 cut(s) | 114, 2004 |
| BcoDI | GTCTC | 6 cut(s) | 459, 488, 1250, 1266, 1501, 1555 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BfoI | RGCGCY | 1 cut(s) | 2130 |
| BfrI | CTTAAG | 1 cut(s) | 1999 |
| BfuAI | ACCTGC | 3 cut(s) | 595, 974, 1789 |
| BfuI | GTATCC | 2 cut(s) | 114, 2004 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1397 |
| BisI | GCNGC | 5 cut(s) | 78, 81, 555, 591, 1885 |
| BlnI | CCTAGG | 1 cut(s) | 824 |
| BlsI | GCNGC | 5 cut(s) | 79, 82, 556, 592, 1886 |
| Bme1390I | CCNGG | 3 cut(s) | 45, 858, 1596 |
| Bme18I | GGWCC | 2 cut(s) | 679, 1231 |
| BmgT120I | GGNCC | 4 cut(s) | 618, 651, 679, 1231 |
| BmrFI | CCNGG | 3 cut(s) | 45, 858, 1596 |
| BmsI | GCATC | 5 cut(s) | 326, 381, 411, 541, 2068 |
| BpiI | GAAGAC | 1 cut(s) | 125 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1535, 1567 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| Bpu14I | TTCGAA | 1 cut(s) | 1638 |
| BpuEI | CTTGAG | 8 cut(s) | 201, 368, 459, 903, 924, 954, 1466, 2216 |
| Bsa29I | ATCGAT | 1 cut(s) | 1753 |
| BsaHI | GRCGYC | 2 cut(s) | 1259, 2127 |
| BsaI | GGTCTC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 5 cut(s) | 145, 824, 1245, 1595, 2082 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1947, 1977 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 47, 479, 593, 1522 |
| Bse21I | CCTNAGG | 3 cut(s) | 796, 1770, 2139 |
| Bse3DI | GCAATG | 3 cut(s) | 290, 1346, 2094 |
| BseBI | CCWGG | 3 cut(s) | 45, 858, 1596 |
| BseCI | ATCGAT | 1 cut(s) | 1753 |
| BseDI | CCNNGG | 5 cut(s) | 145, 824, 1245, 1595, 2082 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 47, 479, 593, 1522 |
| BseMI | GCAATG | 3 cut(s) | 290, 1346, 2094 |
| BseMII | CTCAG | 3 cut(s) | 75, 1026, 1566 |
| BseRI | GAGGAG | 4 cut(s) | 1235, 1238, 1241, 2087 |
| BseSI | GKGCMC | 1 cut(s) | 916 |
| BseXI | GCAGC | 3 cut(s) | 64, 92, 566 |
| BseYI | CCCAGC | 1 cut(s) | 1819 |
| BsgI | GTGCAG | 1 cut(s) | 1817 |
| BshFI | GGCC | 7 cut(s) | 251, 620, 652, 1391, 1400, 1451, 1884 |
| BshNI | GGYRCC | 4 cut(s) | 1109, 1931, 2126, 2282 |
| BshVI | ATCGAT | 1 cut(s) | 1753 |
| BsiHKAI | GWGCWC | 2 cut(s) | 916, 1812 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 47, 479, 593, 1522 |
| BsmAI | GTCTC | 6 cut(s) | 459, 488, 1250, 1266, 1501, 1555 |
| BsmBI | CGTCTC | 2 cut(s) | 1250, 1266 |
| BsnI | GGCC | 7 cut(s) | 251, 620, 652, 1391, 1400, 1451, 1884 |
| Bso31I | GGTCTC | 1 cut(s) | 488 |
| Bsp119I | TTCGAA | 1 cut(s) | 1638 |
| Bsp1286I | GDGCHC | 3 cut(s) | 525, 916, 1812 |
| Bsp19I | CCATGG | 2 cut(s) | 145, 2082 |
| BspACI | CCGC | 4 cut(s) | 224, 590, 1823, 1885 |
| BspANI | GGCC | 7 cut(s) | 251, 620, 652, 1391, 1400, 1451, 1884 |
| BspCNI | CTCAG | 3 cut(s) | 76, 1027, 1565 |
| BspDI | ATCGAT | 1 cut(s) | 1753 |
| BspHI | TCATGA | 3 cut(s) | 1084, 1252, 1893 |
| BspMAI | CTGCAG | 1 cut(s) | 82 |
| BspMI | ACCTGC | 3 cut(s) | 595, 974, 1789 |
| BspPI | GGATC | 9 cut(s) | 158, 574, 697, 827, 876, 1195, 1586, 1599, 2120 |
| BspQI | GCTCTTC | 1 cut(s) | 1842 |
| BspT104I | TTCGAA | 1 cut(s) | 1638 |
| BspT107I | GGYRCC | 4 cut(s) | 1109, 1931, 2126, 2282 |
| BspTI | CTTAAG | 1 cut(s) | 1999 |
| BspTNI | GGTCTC | 1 cut(s) | 488 |
| BsrBI | CCGCTC | 1 cut(s) | 224 |
| BsrDI | GCAATG | 3 cut(s) | 290, 1346, 2094 |
| BssECI | CCNNGG | 5 cut(s) | 145, 824, 1245, 1595, 2082 |
| BssNI | GRCGYC | 2 cut(s) | 1259, 2127 |
| BssT1I | CCWWGG | 4 cut(s) | 145, 824, 1245, 2082 |
| Bst2UI | CCWGG | 3 cut(s) | 45, 858, 1596 |
| Bst4CI | ACNGT | 1 cut(s) | 1517 |
| Bst6I | CTCTTC | 2 cut(s) | 1446, 1842 |
| BstACI | GRCGYC | 2 cut(s) | 1259, 2127 |
| BstAFI | CTTAAG | 1 cut(s) | 1999 |
| BstBI | TTCGAA | 1 cut(s) | 1638 |
| BstC8I | GCNNGC | 2 cut(s) | 1137, 1808 |
| BstDSI | CCRYGG | 2 cut(s) | 145, 2082 |
| BstH2I | RGCGCY | 1 cut(s) | 2130 |
| BstHHI | GCGC | 2 cut(s) | 2050, 2129 |
| BstMAI | GTCTC | 6 cut(s) | 459, 488, 1250, 1266, 1501, 1555 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 275, 323, 980, 1397, 1876 |
| BstNI | CCWGG | 3 cut(s) | 45, 858, 1596 |
| BstNSI | RCATGY | 1 cut(s) | 740 |
| BstSCI | CCNGG | 3 cut(s) | 43, 856, 1594 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstSLI | GKGCMC | 1 cut(s) | 916 |
| BstV1I | GCAGC | 3 cut(s) | 64, 92, 566 |
| BstV2I | GAAGAC | 1 cut(s) | 125 |
| BstX2I | RGATCY | 4 cut(s) | 163, 1200, 1591, 2112 |
| BstYI | RGATCY | 4 cut(s) | 163, 1200, 1591, 2112 |
| Bsu15I | ATCGAT | 1 cut(s) | 1753 |
| Bsu36I | CCTNAGG | 3 cut(s) | 796, 1770, 2139 |
| BsuI | GTATCC | 2 cut(s) | 114, 2004 |
| BsuRI | GGCC | 7 cut(s) | 251, 620, 652, 1391, 1400, 1451, 1884 |
| BsuTUI | ATCGAT | 1 cut(s) | 1753 |
| BtgI | CCRYGG | 2 cut(s) | 145, 2082 |
| BtsIMutI | CAGTG | 1 cut(s) | 2278 |
| BveI | ACCTGC | 3 cut(s) | 595, 974, 1789 |
| Cac8I | GCNNGC | 2 cut(s) | 1137, 1808 |
| CaiI | CAGNNNCTG | 1 cut(s) | 560 |
| CciI | TCATGA | 3 cut(s) | 1084, 1252, 1893 |
| CfoI | GCGC | 2 cut(s) | 2050, 2129 |
| Cfr13I | GGNCC | 4 cut(s) | 618, 651, 679, 1231 |
| ClaI | ATCGAT | 1 cut(s) | 1753 |
| CsiI | ACCWGGT | 1 cut(s) | 43 |
| Csp6I | GTAC | 1 cut(s) | 1790 |
| CviQI | GTAC | 1 cut(s) | 1790 |
| DinI | GGCGCC | 1 cut(s) | 2128 |
| DraIII | CACNNNGTG | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 2 cut(s) | 1446, 1842 |
| EarI | CTCTTC | 2 cut(s) | 1446, 1842 |
| Ecl136II | GAGCTC | 1 cut(s) | 1810 |
| Eco130I | CCWWGG | 4 cut(s) | 145, 824, 1245, 2082 |
| Eco147I | AGGCCT | 1 cut(s) | 251 |
| Eco24I | GRGCYC | 2 cut(s) | 525, 1812 |
| Eco31I | GGTCTC | 1 cut(s) | 488 |
| Eco47I | GGWCC | 2 cut(s) | 679, 1231 |
| Eco53kI | GAGCTC | 1 cut(s) | 1810 |
| Eco57I | CTGAAG | 2 cut(s) | 266, 2254 |
| Eco81I | CCTNAGG | 3 cut(s) | 796, 1770, 2139 |
| EcoICRI | GAGCTC | 1 cut(s) | 1810 |
| EcoO109I | RGGNCCY | 2 cut(s) | 618, 1231 |
| EcoRII | CCWGG | 3 cut(s) | 43, 856, 1594 |
| EcoT14I | CCWWGG | 4 cut(s) | 145, 824, 1245, 2082 |
| EcoT22I | ATGCAT | 1 cut(s) | 1765 |
| EcoT38I | GRGCYC | 2 cut(s) | 525, 1812 |
| EgeI | GGCGCC | 1 cut(s) | 2128 |
| EheI | GGCGCC | 1 cut(s) | 2128 |
| ErhI | CCWWGG | 4 cut(s) | 145, 824, 1245, 2082 |
| Esp3I | CGTCTC | 2 cut(s) | 1250, 1266 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1388, 1420 |
| FauNDI | CATATG | 1 cut(s) | 197 |
| FblI | GTMKAC | 1 cut(s) | 1176 |
| Fnu4HI | GCNGC | 5 cut(s) | 78, 81, 555, 591, 1885 |
| FriOI | GRGCYC | 2 cut(s) | 525, 1812 |
| Fsp4HI | GCNGC | 5 cut(s) | 78, 81, 555, 591, 1885 |
| FspI | TGCGCA | 1 cut(s) | 2049 |
| GlaI | GCGC | 2 cut(s) | 2049, 2128 |
| GluI | GCNGC | 5 cut(s) | 78, 81, 555, 591, 1885 |
| GsaI | CCCAGC | 1 cut(s) | 1823 |
| HaeII | RGCGCY | 1 cut(s) | 2130 |
| HaeIII | GGCC | 7 cut(s) | 251, 620, 652, 1391, 1400, 1451, 1884 |
| HhaI | GCGC | 2 cut(s) | 2050, 2129 |
| Hin1I | GRCGYC | 2 cut(s) | 1259, 2127 |
| Hin6I | GCGC | 2 cut(s) | 2048, 2127 |
| HinP1I | GCGC | 2 cut(s) | 2048, 2127 |
| HincII | GTYRAC | 4 cut(s) | 577, 790, 1212, 1866 |
| HindII | GTYRAC | 4 cut(s) | 577, 790, 1212, 1866 |
| HindIII | AAGCTT | 1 cut(s) | 972 |
| HinfI | GANTC | 6 cut(s) | 422, 625, 1054, 1635, 1697, 2276 |
| HphI | GGTGA | 3 cut(s) | 863, 1543, 1724 |
| Hpy166II | GTNNAC | 9 cut(s) | 308, 577, 790, 914, 1177, 1212, 1432, 1715, 1866 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 745 |
| Hpy188III | TCNNGA | 9 cut(s) | 347, 476, 1085, 1253, 1445, 1483, 1838, 1894, 2195 |
| Hpy8I | GTNNAC | 9 cut(s) | 308, 577, 790, 914, 1177, 1212, 1432, 1715, 1866 |
| HpyCH4III | ACNGT | 1 cut(s) | 1517 |
| HpyCH4IV | ACGT | 9 cut(s) | 820, 903, 934, 1208, 1241, 1259, 1833, 2184, 2204 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 275, 323, 980, 1397, 1876 |
| HpySE526I | ACGT | 9 cut(s) | 820, 903, 934, 1208, 1241, 1259, 1833, 2184, 2204 |
| Hsp92I | GRCGYC | 2 cut(s) | 1259, 2127 |
| HspAI | GCGC | 2 cut(s) | 2048, 2127 |
| KasI | GGCGCC | 1 cut(s) | 2126 |
| LguI | GCTCTTC | 1 cut(s) | 1842 |
| LmnI | GCTCC | 1 cut(s) | 221 |
| Lsp1109I | GCAGC | 3 cut(s) | 64, 92, 566 |
| LweI | GCATC | 5 cut(s) | 326, 381, 411, 541, 2068 |
| MabI | ACCWGGT | 1 cut(s) | 43 |
| MaeII | ACGT | 9 cut(s) | 820, 903, 934, 1208, 1241, 1259, 1833, 2184, 2204 |
| MaeIII | GTNAC | 3 cut(s) | 297, 1098, 1147 |
| MbiI | CCGCTC | 1 cut(s) | 224 |
| MfeI | CAATTG | 2 cut(s) | 1272, 1742 |
| MflI | RGATCY | 4 cut(s) | 163, 1200, 1591, 2112 |
| MhlI | GDGCHC | 3 cut(s) | 525, 916, 1812 |
| Mly113I | GGCGCC | 1 cut(s) | 2127 |
| MlyI | GAGTC | 2 cut(s) | 431, 1063 |
| MmeI | TCCRAC | 6 cut(s) | 80, 430, 841, 866, 952, 1329 |
| Mph1103I | ATGCAT | 1 cut(s) | 1765 |
| MroXI | GAANNNNTTC | 1 cut(s) | 251 |
| MseI | TTAA | 5 cut(s) | 383, 1416, 1719, 2000, 2299 |
| MslI | CAYNNNNRTG | 3 cut(s) | 206, 377, 1728 |
| MspA1I | CMGCKG | 4 cut(s) | 83, 98, 1556, 1823 |
| MspCI | CTTAAG | 1 cut(s) | 1999 |
| MspR9I | CCNGG | 3 cut(s) | 45, 858, 1596 |
| MunI | CAATTG | 2 cut(s) | 1272, 1742 |
| MvaI | CCWGG | 3 cut(s) | 45, 858, 1596 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 275, 323, 980, 1397, 1876 |
| NarI | GGCGCC | 1 cut(s) | 2127 |
| NcoI | CCATGG | 2 cut(s) | 145, 2082 |
| NdeI | CATATG | 1 cut(s) | 197 |
| NmuCI | GTSAC | 1 cut(s) | 1147 |
| NsbI | TGCGCA | 1 cut(s) | 2049 |
| NsiI | ATGCAT | 1 cut(s) | 1765 |
| NspI | RCATGY | 1 cut(s) | 740 |
| NspV | TTCGAA | 1 cut(s) | 1638 |
| PagI | TCATGA | 3 cut(s) | 1084, 1252, 1893 |
| PceI | AGGCCT | 1 cut(s) | 251 |
| PciSI | GCTCTTC | 1 cut(s) | 1842 |
| PdmI | GAANNNNTTC | 1 cut(s) | 251 |
| PfeI | GAWTC | 4 cut(s) | 625, 1635, 1697, 2276 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 47 |
| PfoI | TCCNGGA | 1 cut(s) | 856 |
| PkrI | GCNGC | 5 cut(s) | 79, 82, 556, 592, 1886 |
| PleI | GAGTC | 2 cut(s) | 430, 1062 |
| PluTI | GGCGCC | 1 cut(s) | 2130 |
| PpsI | GAGTC | 2 cut(s) | 430, 1062 |
| PpuMI | RGGWCCY | 1 cut(s) | 1231 |
| Psp124BI | GAGCTC | 1 cut(s) | 1812 |
| Psp1406I | AACGTT | 2 cut(s) | 903, 2184 |
| Psp5II | RGGWCCY | 1 cut(s) | 1231 |
| Psp6I | CCWGG | 3 cut(s) | 43, 856, 1594 |
| PspFI | CCCAGC | 1 cut(s) | 1819 |
| PspGI | CCWGG | 3 cut(s) | 43, 856, 1594 |
| PspPI | GGNCC | 4 cut(s) | 618, 651, 679, 1231 |
| PspPPI | RGGWCCY | 1 cut(s) | 1231 |
| PstI | CTGCAG | 1 cut(s) | 82 |
| PstNI | CAGNNNCTG | 1 cut(s) | 560 |
| PsuI | RGATCY | 4 cut(s) | 163, 1200, 1591, 2112 |
| PvuII | CAGCTG | 3 cut(s) | 83, 98, 1556 |
| RsaI | GTAC | 1 cut(s) | 1791 |
| RsaNI | GTAC | 1 cut(s) | 1790 |
| RseI | CAYNNNNRTG | 3 cut(s) | 206, 377, 1728 |
| SacI | GAGCTC | 1 cut(s) | 1812 |
| SapI | GCTCTTC | 1 cut(s) | 1842 |
| SaqAI | TTAA | 5 cut(s) | 383, 1416, 1719, 2000, 2299 |
| SatI | GCNGC | 5 cut(s) | 78, 81, 555, 591, 1885 |
| Sau96I | GGNCC | 4 cut(s) | 618, 651, 679, 1231 |
| SchI | GAGTC | 2 cut(s) | 431, 1063 |
| ScrFI | CCNGG | 3 cut(s) | 45, 858, 1596 |
| SduI | GDGCHC | 3 cut(s) | 525, 916, 1812 |
| SexAI | ACCWGGT | 1 cut(s) | 43 |
| SfaNI | GCATC | 5 cut(s) | 326, 381, 411, 541, 2068 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1397 |
| SfoI | GGCGCC | 1 cut(s) | 2128 |
| SfuI | TTCGAA | 1 cut(s) | 1638 |
| SinI | GGWCC | 2 cut(s) | 679, 1231 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 206, 377, 1728 |
| SmlI | CTYRAG | 9 cut(s) | 216, 347, 474, 918, 939, 969, 1445, 1999, 2195 |
| SmoI | CTYRAG | 9 cut(s) | 216, 347, 474, 918, 939, 969, 1445, 1999, 2195 |
| SseBI | AGGCCT | 1 cut(s) | 251 |
| SsiI | CCGC | 4 cut(s) | 224, 590, 1823, 1885 |
| SspDI | GGCGCC | 1 cut(s) | 2126 |
| SstI | GAGCTC | 1 cut(s) | 1812 |
| StuI | AGGCCT | 1 cut(s) | 251 |
| StyD4I | CCNGG | 3 cut(s) | 43, 856, 1594 |
| StyI | CCWWGG | 4 cut(s) | 145, 824, 1245, 2082 |
| TaaI | ACNGT | 1 cut(s) | 1517 |
| TaiI | ACGT | 9 cut(s) | 823, 906, 937, 1211, 1244, 1262, 1836, 2187, 2207 |
| TaqI | TCGA | 2 cut(s) | 1638, 1753 |
| TatI | WGTACW | 1 cut(s) | 1789 |
| TauI | GCSGC | 2 cut(s) | 593, 1887 |
| TfiI | GAWTC | 4 cut(s) | 625, 1635, 1697, 2276 |
| Tru1I | TTAA | 5 cut(s) | 383, 1416, 1719, 2000, 2299 |
| Tru9I | TTAA | 5 cut(s) | 383, 1416, 1719, 2000, 2299 |
| TscAI | CASTG | 1 cut(s) | 2278 |
| TseFI | GTSAC | 1 cut(s) | 1147 |
| TseI | GCWGC | 3 cut(s) | 77, 80, 554 |
| Tsp45I | GTSAC | 1 cut(s) | 1147 |
| TspGWI | ACGGA | 2 cut(s) | 22, 2168 |
| TspRI | CASTG | 1 cut(s) | 2278 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 47 |
| Vha464I | CTTAAG | 1 cut(s) | 1999 |
| VneI | GTGCAC | 1 cut(s) | 912 |
| VpaK11BI | GGWCC | 2 cut(s) | 679, 1231 |
| XapI | RAATTY | 6 cut(s) | 185, 234, 1461, 1478, 1946, 2054 |
| XbaI | TCTAGA | 1 cut(s) | 1837 |
| XceI | RCATGY | 1 cut(s) | 740 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 882 |
| XmaJI | CCTAGG | 1 cut(s) | 824 |
| XmiI | GTMKAC | 1 cut(s) | 1176 |
| XmnI | GAANNNNTTC | 1 cut(s) | 251 |
| ZraI | GACGTC | 1 cut(s) | 1260 |
| Zsp2I | ATGCAT | 1 cut(s) | 1765 |