transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 26 - 62 | 1.1e-07 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 61 - 122 | 2.1e-21 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH_2 | PF17919 | 62 - 92 | 1.1e-06 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 254 - 347 | 1.3e-15 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 947 |
| Acc36I | ACCTGC | 1 cut(s) | 48 |
| AccI | GTMKAC | 1 cut(s) | 276 |
| AccIII | TCCGGA | 1 cut(s) | 133 |
| AciI | CCGC | 2 cut(s) | 218, 755 |
| AclI | AACGTT | 1 cut(s) | 1132 |
| AclWI | GGATC | 1 cut(s) | 331 |
| AcsI | RAATTY | 6 cut(s) | 362, 472, 555, 590, 1332, 1362 |
| AcuI | CTGAAG | 1 cut(s) | 96 |
| AdeI | CACNNNGTG | 2 cut(s) | 886, 1021 |
| AfaI | GTAC | 4 cut(s) | 8, 501, 675, 891 |
| AhlI | ACTAGT | 1 cut(s) | 1046 |
| AjnI | CCWGG | 1 cut(s) | 1607 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1422, 1454 |
| AluBI | AGCT | 3 cut(s) | 94, 116, 1315 |
| AluI | AGCT | 3 cut(s) | 94, 116, 1315 |
| Alw21I | GWGCWC | 2 cut(s) | 1245, 1588 |
| Alw26I | GTCTC | 4 cut(s) | 844, 1131, 1511, 1517 |
| AlwI | GGATC | 1 cut(s) | 331 |
| Aor13HI | TCCGGA | 1 cut(s) | 133 |
| AoxI | GGCC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 4 cut(s) | 290, 1289, 1312, 1546 |
| ApoI | RAATTY | 6 cut(s) | 362, 472, 555, 590, 1332, 1362 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 258, 290, 899, 931, 951, 983, 1036, 1068 |
| AseI | ATTAAT | 1 cut(s) | 158 |
| AspLEI | GCGC | 2 cut(s) | 184, 1377 |
| AspS9I | GGNCC | 2 cut(s) | 100, 785 |
| AsuC2I | CCSGG | 2 cut(s) | 1073, 1109 |
| AsuHPI | GGTGA | 4 cut(s) | 47, 49, 1182, 1307 |
| AsuII | TTCGAA | 1 cut(s) | 1419 |
| AvaII | GGWCC | 1 cut(s) | 785 |
| Bbv12I | GWGCWC | 2 cut(s) | 1245, 1588 |
| BbvI | GCAGC | 4 cut(s) | 277, 1301, 1324, 1558 |
| BccI | CCATC | 3 cut(s) | 947, 1016, 1318 |
| BciT130I | CCWGG | 1 cut(s) | 1609 |
| BclI | TGATCA | 2 cut(s) | 283, 877 |
| BcnI | CCSGG | 2 cut(s) | 1073, 1109 |
| BcoDI | GTCTC | 4 cut(s) | 844, 1131, 1511, 1517 |
| BcuI | ACTAGT | 1 cut(s) | 1046 |
| BfaI | CTAG | 3 cut(s) | 233, 936, 1047 |
| BfuAI | ACCTGC | 1 cut(s) | 48 |
| BisI | GCNGC | 5 cut(s) | 291, 756, 1290, 1313, 1547 |
| BlsI | GCNGC | 5 cut(s) | 292, 757, 1291, 1314, 1548 |
| Bme1390I | CCNGG | 3 cut(s) | 1073, 1109, 1609 |
| Bme18I | GGWCC | 1 cut(s) | 785 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 785 |
| BmiI | GGNNCC | 3 cut(s) | 262, 742, 786 |
| BmrFI | CCNGG | 3 cut(s) | 1073, 1109, 1609 |
| BmsI | GCATC | 5 cut(s) | 157, 310, 472, 995, 1132 |
| Bpu14I | TTCGAA | 1 cut(s) | 1419 |
| BpuEI | CTTGAG | 3 cut(s) | 80, 439, 1489 |
| BpuMI | CCSGG | 2 cut(s) | 1073, 1109 |
| BsaAI | YACGTR | 1 cut(s) | 503 |
| BsaI | GGTCTC | 1 cut(s) | 1131 |
| BsaJI | CCNNGG | 3 cut(s) | 515, 1444, 1608 |
| BsaWI | WCCGGW | 4 cut(s) | 133, 243, 676, 1228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 100, 130 |
| Bse118I | RCCGGY | 1 cut(s) | 1292 |
| Bse3DI | GCAATG | 3 cut(s) | 643, 1307, 1549 |
| BseAI | TCCGGA | 1 cut(s) | 133 |
| BseBI | CCWGG | 1 cut(s) | 1609 |
| BseDI | CCNNGG | 3 cut(s) | 515, 1444, 1608 |
| BseGI | GGATG | 1 cut(s) | 628 |
| BseMI | GCAATG | 3 cut(s) | 643, 1307, 1549 |
| BseRI | GAGGAG | 1 cut(s) | 501 |
| BseXI | GCAGC | 4 cut(s) | 277, 1301, 1324, 1558 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1245, 1588 |
| BsiSI | CCGG | 7 cut(s) | 134, 244, 677, 1072, 1109, 1229, 1293 |
| BslFI | GGGAC | 1 cut(s) | 798 |
| BsmAI | GTCTC | 4 cut(s) | 844, 1131, 1511, 1517 |
| BsmBI | CGTCTC | 1 cut(s) | 1511 |
| BsmFI | GGGAC | 1 cut(s) | 798 |
| BsmI | GAATGC | 3 cut(s) | 696, 1291, 1360 |
| BsnI | GGCC | 1 cut(s) | 101 |
| Bso31I | GGTCTC | 1 cut(s) | 1131 |
| Bsp119I | TTCGAA | 1 cut(s) | 1419 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1245, 1588 |
| Bsp13I | TCCGGA | 1 cut(s) | 133 |
| Bsp143I | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| Bsp19I | CCATGG | 2 cut(s) | 515, 1444 |
| BspACI | CCGC | 2 cut(s) | 218, 755 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspEI | TCCGGA | 1 cut(s) | 133 |
| BspHI | TCATGA | 1 cut(s) | 1390 |
| BspLI | GGNNCC | 3 cut(s) | 262, 742, 786 |
| BspMI | ACCTGC | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 331 |
| BspT104I | TTCGAA | 1 cut(s) | 1419 |
| BspTNI | GGTCTC | 1 cut(s) | 1131 |
| BsrDI | GCAATG | 3 cut(s) | 643, 1307, 1549 |
| BsrFI | RCCGGY | 1 cut(s) | 1292 |
| BssAI | RCCGGY | 1 cut(s) | 1292 |
| BssECI | CCNNGG | 3 cut(s) | 515, 1444, 1608 |
| BssMI | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| BssT1I | CCWWGG | 2 cut(s) | 515, 1444 |
| Bst2UI | CCWGG | 1 cut(s) | 1609 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 1102 |
| BstBAI | YACGTR | 1 cut(s) | 503 |
| BstBI | TTCGAA | 1 cut(s) | 1419 |
| BstC8I | GCNNGC | 3 cut(s) | 216, 575, 865 |
| BstDEI | CTNAG | 1 cut(s) | 1201 |
| BstDSI | CCRYGG | 2 cut(s) | 515, 1444 |
| BstEII | GGTNACC | 1 cut(s) | 35 |
| BstF5I | GGATG | 1 cut(s) | 628 |
| BstHHI | GCGC | 2 cut(s) | 184, 1377 |
| BstKTI | GATC | 5 cut(s) | 80, 286, 339, 565, 880 |
| BstMAI | GTCTC | 4 cut(s) | 844, 1131, 1511, 1517 |
| BstMBI | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1151, 1256, 1560 |
| BstNI | CCWGG | 1 cut(s) | 1609 |
| BstNSI | RCATGY | 1 cut(s) | 1189 |
| BstPI | GGTNACC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 3 cut(s) | 1071, 1107, 1607 |
| BstV1I | GCAGC | 4 cut(s) | 277, 1301, 1324, 1558 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 567 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtgI | CCRYGG | 2 cut(s) | 515, 1444 |
| BtgZI | GCGATG | 1 cut(s) | 966 |
| BtsCI | GGATG | 1 cut(s) | 628 |
| BtsI | GCAGTG | 1 cut(s) | 834 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 834 |
| BveI | ACCTGC | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 3 cut(s) | 216, 575, 865 |
| CciI | TCATGA | 1 cut(s) | 1390 |
| CfoI | GCGC | 2 cut(s) | 184, 1377 |
| Cfr10I | RCCGGY | 1 cut(s) | 1292 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 785 |
| CseI | GACGC | 1 cut(s) | 159 |
| Csp6I | GTAC | 4 cut(s) | 7, 500, 674, 890 |
| CviAII | CATG | 8 cut(s) | 287, 434, 516, 781, 1186, 1282, 1391, 1445 |
| CviQI | GTAC | 4 cut(s) | 7, 500, 674, 890 |
| DdeI | CTNAG | 1 cut(s) | 1201 |
| DpnI | GATC | 5 cut(s) | 79, 285, 338, 564, 879 |
| DpnII | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| DraIII | CACNNNGTG | 2 cut(s) | 886, 1021 |
| Eco130I | CCWWGG | 2 cut(s) | 515, 1444 |
| Eco31I | GGTCTC | 1 cut(s) | 1131 |
| Eco47I | GGWCC | 1 cut(s) | 785 |
| Eco57I | CTGAAG | 1 cut(s) | 96 |
| Eco91I | GGTNACC | 1 cut(s) | 35 |
| EcoO109I | RGGNCCY | 2 cut(s) | 100, 785 |
| EcoO65I | GGTNACC | 1 cut(s) | 35 |
| EcoRII | CCWGG | 1 cut(s) | 1607 |
| EcoT14I | CCWWGG | 2 cut(s) | 515, 1444 |
| ErhI | CCWWGG | 2 cut(s) | 515, 1444 |
| Esp3I | CGTCTC | 1 cut(s) | 1511 |
| FaeI | CATG | 8 cut(s) | 290, 437, 519, 784, 1189, 1285, 1394, 1448 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 198, 230 |
| FaqI | GGGAC | 1 cut(s) | 798 |
| FatI | CATG | 8 cut(s) | 286, 433, 515, 780, 1185, 1281, 1390, 1444 |
| FbaI | TGATCA | 2 cut(s) | 283, 877 |
| FblI | GTMKAC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 5 cut(s) | 291, 756, 1290, 1313, 1547 |
| FokI | GGATG | 1 cut(s) | 635 |
| Fsp4HI | GCNGC | 5 cut(s) | 291, 756, 1290, 1313, 1547 |
| FspBI | CTAG | 3 cut(s) | 233, 936, 1047 |
| GlaI | GCGC | 2 cut(s) | 183, 1376 |
| GluI | GCNGC | 5 cut(s) | 291, 756, 1290, 1313, 1547 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| HapII | CCGG | 7 cut(s) | 134, 244, 677, 1072, 1109, 1229, 1293 |
| HgaI | GACGC | 1 cut(s) | 159 |
| HhaI | GCGC | 2 cut(s) | 184, 1377 |
| Hin1II | CATG | 8 cut(s) | 290, 437, 519, 784, 1189, 1285, 1394, 1448 |
| Hin6I | GCGC | 2 cut(s) | 182, 1375 |
| HinP1I | GCGC | 2 cut(s) | 182, 1375 |
| HincII | GTYRAC | 1 cut(s) | 1502 |
| HindII | GTYRAC | 1 cut(s) | 1502 |
| HinfI | GANTC | 2 cut(s) | 506, 1343 |
| HpaII | CCGG | 7 cut(s) | 134, 244, 677, 1072, 1109, 1229, 1293 |
| HphI | GGTGA | 4 cut(s) | 47, 49, 1182, 1307 |
| Hpy166II | GTNNAC | 6 cut(s) | 277, 451, 535, 674, 1298, 1502 |
| Hpy188I | TCNGA | 1 cut(s) | 175 |
| Hpy188III | TCNNGA | 5 cut(s) | 134, 233, 359, 560, 1391 |
| Hpy8I | GTNNAC | 6 cut(s) | 277, 451, 535, 674, 1298, 1502 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 3 cut(s) | 467, 1207, 1610 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 1102 |
| HpyCH4IV | ACGT | 4 cut(s) | 502, 1132, 1504, 1614 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1151, 1256, 1560 |
| HpyF3I | CTNAG | 1 cut(s) | 1201 |
| HpySE526I | ACGT | 4 cut(s) | 502, 1132, 1504, 1614 |
| Hsp92II | CATG | 8 cut(s) | 290, 437, 519, 784, 1189, 1285, 1394, 1448 |
| HspAI | GCGC | 2 cut(s) | 182, 1375 |
| Kpn2I | TCCGGA | 1 cut(s) | 133 |
| Ksp22I | TGATCA | 2 cut(s) | 283, 877 |
| Kzo9I | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| LmnI | GCTCC | 6 cut(s) | 121, 570, 740, 1240, 1372, 1448 |
| Lsp1109I | GCAGC | 4 cut(s) | 277, 1301, 1324, 1558 |
| LweI | GCATC | 5 cut(s) | 157, 310, 472, 995, 1132 |
| MaeI | CTAG | 3 cut(s) | 233, 936, 1047 |
| MaeII | ACGT | 4 cut(s) | 502, 1132, 1504, 1614 |
| MaeIII | GTNAC | 4 cut(s) | 35, 544, 773, 1188 |
| MalI | GATC | 5 cut(s) | 79, 285, 338, 564, 879 |
| MboI | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| MboII | GAAGA | 6 cut(s) | 449, 678, 692, 758, 1009, 1217 |
| MfeI | CAATTG | 5 cut(s) | 488, 656, 858, 1179, 1452 |
| MhlI | GDGCHC | 2 cut(s) | 1245, 1588 |
| MlyI | GAGTC | 1 cut(s) | 1352 |
| MmeI | TCCRAC | 2 cut(s) | 153, 1218 |
| MroI | TCCGGA | 1 cut(s) | 133 |
| MseI | TTAA | 7 cut(s) | 26, 87, 158, 186, 297, 1080, 1461 |
| MslI | CAYNNNNRTG | 3 cut(s) | 438, 717, 821 |
| MspA1I | CMGCKG | 2 cut(s) | 755, 1315 |
| MspI | CCGG | 7 cut(s) | 134, 244, 677, 1072, 1109, 1229, 1293 |
| MspR9I | CCNGG | 3 cut(s) | 1073, 1109, 1609 |
| MunI | CAATTG | 5 cut(s) | 488, 656, 858, 1179, 1452 |
| Mva1269I | GAATGC | 3 cut(s) | 696, 1291, 1360 |
| MvaI | CCWGG | 1 cut(s) | 1609 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1151, 1256, 1560 |
| NciI | CCSGG | 2 cut(s) | 1073, 1109 |
| NcoI | CCATGG | 2 cut(s) | 515, 1444 |
| NdeII | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| NlaIII | CATG | 8 cut(s) | 290, 437, 519, 784, 1189, 1285, 1394, 1448 |
| NlaIV | GGNNCC | 3 cut(s) | 262, 742, 786 |
| NmuCI | GTSAC | 3 cut(s) | 35, 773, 1188 |
| NspI | RCATGY | 1 cut(s) | 1189 |
| NspV | TTCGAA | 1 cut(s) | 1419 |
| PagI | TCATGA | 1 cut(s) | 1390 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 337 |
| PctI | GAATGC | 3 cut(s) | 696, 1291, 1360 |
| PfeI | GAWTC | 1 cut(s) | 506 |
| PkrI | GCNGC | 5 cut(s) | 292, 757, 1291, 1314, 1548 |
| PleI | GAGTC | 1 cut(s) | 1351 |
| PpsI | GAGTC | 1 cut(s) | 1351 |
| Ppu21I | YACGTR | 1 cut(s) | 503 |
| PpuMI | RGGWCCY | 1 cut(s) | 785 |
| PshBI | ATTAAT | 1 cut(s) | 158 |
| PsiI | TTATAA | 1 cut(s) | 947 |
| Psp1406I | AACGTT | 1 cut(s) | 1132 |
| Psp5II | RGGWCCY | 1 cut(s) | 785 |
| Psp6I | CCWGG | 1 cut(s) | 1607 |
| PspEI | GGTNACC | 1 cut(s) | 35 |
| PspGI | CCWGG | 1 cut(s) | 1607 |
| PspN4I | GGNNCC | 3 cut(s) | 262, 742, 786 |
| PspPI | GGNCC | 2 cut(s) | 100, 785 |
| PspPPI | RGGWCCY | 1 cut(s) | 785 |
| PvuII | CAGCTG | 1 cut(s) | 1315 |
| RsaI | GTAC | 4 cut(s) | 8, 501, 675, 891 |
| RsaNI | GTAC | 4 cut(s) | 7, 500, 674, 890 |
| RseI | CAYNNNNRTG | 3 cut(s) | 438, 717, 821 |
| SaqAI | TTAA | 7 cut(s) | 26, 87, 158, 186, 297, 1080, 1461 |
| SatI | GCNGC | 5 cut(s) | 291, 756, 1290, 1313, 1547 |
| Sau3AI | GATC | 5 cut(s) | 77, 283, 336, 562, 877 |
| Sau96I | GGNCC | 2 cut(s) | 100, 785 |
| SchI | GAGTC | 1 cut(s) | 1352 |
| ScrFI | CCNGG | 3 cut(s) | 1073, 1109, 1609 |
| SduI | GDGCHC | 2 cut(s) | 1245, 1588 |
| SfaNI | GCATC | 5 cut(s) | 157, 310, 472, 995, 1132 |
| SfuI | TTCGAA | 1 cut(s) | 1419 |
| SinI | GGWCC | 1 cut(s) | 785 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 438, 717, 821 |
| SmlI | CTYRAG | 3 cut(s) | 95, 418, 1468 |
| SmoI | CTYRAG | 3 cut(s) | 95, 418, 1468 |
| SpeI | ACTAGT | 1 cut(s) | 1046 |
| SsiI | CCGC | 2 cut(s) | 218, 755 |
| SspI | AATATT | 4 cut(s) | 302, 913, 1004, 1087 |
| SspMI | CTAG | 3 cut(s) | 233, 936, 1047 |
| StyD4I | CCNGG | 3 cut(s) | 1071, 1107, 1607 |
| StyI | CCWWGG | 2 cut(s) | 515, 1444 |
| TaaI | ACNGT | 2 cut(s) | 150, 1102 |
| TaiI | ACGT | 4 cut(s) | 505, 1135, 1507, 1617 |
| TaqI | TCGA | 2 cut(s) | 331, 1419 |
| TaqII | GACCGA | 1 cut(s) | 90 |
| TauI | GCSGC | 1 cut(s) | 758 |
| TfiI | GAWTC | 1 cut(s) | 506 |
| Tru1I | TTAA | 7 cut(s) | 26, 87, 158, 186, 297, 1080, 1461 |
| Tru9I | TTAA | 7 cut(s) | 26, 87, 158, 186, 297, 1080, 1461 |
| TscAI | CASTG | 2 cut(s) | 286, 834 |
| TseFI | GTSAC | 3 cut(s) | 35, 773, 1188 |
| TseI | GCWGC | 4 cut(s) | 290, 1289, 1312, 1546 |
| Tsp45I | GTSAC | 3 cut(s) | 35, 773, 1188 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| TspRI | CASTG | 2 cut(s) | 286, 834 |
| VpaK11BI | GGWCC | 1 cut(s) | 785 |
| VspI | ATTAAT | 1 cut(s) | 158 |
| XapI | RAATTY | 6 cut(s) | 362, 472, 555, 590, 1332, 1362 |
| XbaI | TCTAGA | 1 cut(s) | 232 |
| XceI | RCATGY | 1 cut(s) | 1189 |
| XmiI | GTMKAC | 1 cut(s) | 276 |
| XspI | CTAG | 3 cut(s) | 233, 936, 1047 |