Integrase core domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 88 |
| Acc36I | ACCTGC | 1 cut(s) | 88 |
| AccB1I | GGYRCC | 1 cut(s) | 233 |
| AccI | GTMKAC | 1 cut(s) | 225 |
| AccII | CGCG | 1 cut(s) | 62 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 142 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AoxI | GGCC | 3 cut(s) | 45, 188, 204 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 2 cut(s) | 23, 112 |
| BanI | GGYRCC | 1 cut(s) | 233 |
| BbsI | GAAGAC | 1 cut(s) | 206 |
| BccI | CCATC | 2 cut(s) | 20, 248 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BciVI | GTATCC | 1 cut(s) | 75 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BfuAI | ACCTGC | 1 cut(s) | 88 |
| BfuI | GTATCC | 1 cut(s) | 75 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 1 cut(s) | 206 |
| Bsa29I | ATCGAT | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 1 cut(s) | 181 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 142 |
| BseCI | ATCGAT | 1 cut(s) | 336 |
| BseDI | CCNNGG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 142 |
| BsgI | GTGCAG | 1 cut(s) | 116 |
| Bsh1236I | CGCG | 1 cut(s) | 62 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 3 cut(s) | 47, 190, 206 |
| BshNI | GGYRCC | 1 cut(s) | 233 |
| BshVI | ATCGAT | 1 cut(s) | 336 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiSI | CCGG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 142 |
| BsnI | GGCC | 3 cut(s) | 47, 190, 206 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspANI | GGCC | 3 cut(s) | 47, 190, 206 |
| BspDI | ATCGAT | 1 cut(s) | 336 |
| BspFNI | CGCG | 1 cut(s) | 62 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 235 |
| BspMI | ACCTGC | 1 cut(s) | 88 |
| BspT107I | GGYRCC | 1 cut(s) | 233 |
| BssECI | CCNNGG | 1 cut(s) | 181 |
| BssMI | GATC | 1 cut(s) | 49 |
| BssNAI | GTATAC | 1 cut(s) | 226 |
| BssT1I | CCWWGG | 1 cut(s) | 181 |
| Bst1107I | GTATAC | 1 cut(s) | 226 |
| BstFNI | CGCG | 1 cut(s) | 62 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstUI | CGCG | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 1 cut(s) | 206 |
| BstZ17I | GTATAC | 1 cut(s) | 226 |
| Bsu15I | ATCGAT | 1 cut(s) | 336 |
| BsuI | GTATCC | 1 cut(s) | 75 |
| BsuRI | GGCC | 3 cut(s) | 47, 190, 206 |
| BsuTUI | ATCGAT | 1 cut(s) | 336 |
| BveI | ACCTGC | 1 cut(s) | 88 |
| CciI | TCATGA | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| ClaI | ATCGAT | 1 cut(s) | 336 |
| CviAII | CATG | 2 cut(s) | 142, 196 |
| CviJI | RGCY | 5 cut(s) | 47, 122, 155, 190, 206 |
| CviKI_1 | RGCY | 5 cut(s) | 47, 122, 155, 190, 206 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 1 cut(s) | 181 |
| Eco32I | GATATC | 1 cut(s) | 296 |
| EcoRI | GAATTC | 1 cut(s) | 248 |
| EcoRV | GATATC | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 181 |
| ErhI | CCWWGG | 1 cut(s) | 181 |
| FaeI | CATG | 2 cut(s) | 145, 199 |
| FaiI | YATR | 5 cut(s) | 38, 143, 197, 226, 290 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 75, 107 |
| FatI | CATG | 2 cut(s) | 141, 195 |
| FblI | GTMKAC | 1 cut(s) | 225 |
| FspBI | CTAG | 1 cut(s) | 137 |
| HaeIII | GGCC | 3 cut(s) | 47, 190, 206 |
| HapII | CCGG | 1 cut(s) | 119 |
| Hin1II | CATG | 2 cut(s) | 145, 199 |
| HinfI | GANTC | 3 cut(s) | 149, 175, 338 |
| HpaII | CCGG | 1 cut(s) | 119 |
| HphI | GGTGA | 2 cut(s) | 23, 112 |
| Hpy166II | GTNNAC | 2 cut(s) | 103, 226 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| Hpy8I | GTNNAC | 2 cut(s) | 103, 226 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 1 cut(s) | 97 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Hsp92II | CATG | 2 cut(s) | 145, 199 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LpnPI | CCDG | 2 cut(s) | 83, 132 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MboII | GAAGA | 3 cut(s) | 95, 211, 226 |
| MfeI | CAATTG | 1 cut(s) | 41 |
| MluCI | AATT | 5 cut(s) | 14, 33, 41, 111, 248 |
| MluI | ACGCGT | 1 cut(s) | 60 |
| MnlI | CCTC | 1 cut(s) | 139 |
| MseI | TTAA | 3 cut(s) | 17, 110, 273 |
| MspI | CCGG | 1 cut(s) | 119 |
| MunI | CAATTG | 1 cut(s) | 41 |
| MvnI | CGCG | 1 cut(s) | 62 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 2 cut(s) | 145, 199 |
| NlaIV | GGNNCC | 1 cut(s) | 235 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PaqCI | CACCTGC | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PfeI | GAWTC | 3 cut(s) | 149, 175, 338 |
| Ple19I | CGATCG | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 1 cut(s) | 235 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| PvuI | CGATCG | 1 cut(s) | 52 |
| SaqAI | TTAA | 3 cut(s) | 17, 110, 273 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| SetI | ASST | 3 cut(s) | 102, 135, 239 |
| Sse9I | AATT | 5 cut(s) | 14, 33, 41, 111, 248 |
| SspI | AATATT | 1 cut(s) | 277 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 181 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TaqI | TCGA | 2 cut(s) | 252, 336 |
| TasI | AATT | 5 cut(s) | 14, 33, 41, 111, 248 |
| TfiI | GAWTC | 3 cut(s) | 149, 175, 338 |
| Tru1I | TTAA | 3 cut(s) | 17, 110, 273 |
| Tru9I | TTAA | 3 cut(s) | 17, 110, 273 |
| TspDTI | ATGAA | 2 cut(s) | 184, 212 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XmiI | GTMKAC | 1 cut(s) | 225 |
| XspI | CTAG | 1 cut(s) | 137 |