Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 959 |
| Acc36I | ACCTGC | 1 cut(s) | 141 |
| AccB1I | GGYRCC | 1 cut(s) | 292 |
| AciI | CCGC | 1 cut(s) | 276 |
| AclI | AACGTT | 1 cut(s) | 750 |
| AclWI | GGATC | 1 cut(s) | 677 |
| AcoI | YGGCCR | 1 cut(s) | 937 |
| AcuI | CTGAAG | 1 cut(s) | 584 |
| AfaI | GTAC | 2 cut(s) | 85, 804 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 762 |
| AflIII | ACRYGT | 2 cut(s) | 28, 997 |
| AgsI | TTSAA | 7 cut(s) | 102, 220, 241, 250, 317, 922, 951 |
| AjnI | CCWGG | 2 cut(s) | 404, 572 |
| AluBI | AGCT | 9 cut(s) | 215, 256, 265, 374, 461, 720, 824, 851, 993 |
| AluI | AGCT | 9 cut(s) | 215, 256, 265, 374, 461, 720, 824, 851, 993 |
| Alw21I | GWGCWC | 2 cut(s) | 196, 826 |
| Alw44I | GTGCAC | 1 cut(s) | 192 |
| AlwI | GGATC | 1 cut(s) | 677 |
| AoxI | GGCC | 2 cut(s) | 63, 937 |
| ApaLI | GTGCAC | 1 cut(s) | 192 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| AseI | ATTAAT | 1 cut(s) | 320 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 245 |
| AspLEI | GCGC | 1 cut(s) | 960 |
| AsuHPI | GGTGA | 3 cut(s) | 127, 650, 853 |
| BaeGI | GKGCMC | 1 cut(s) | 196 |
| BalI | TGGCCA | 1 cut(s) | 939 |
| BanI | GGYRCC | 1 cut(s) | 292 |
| BanII | GRGCYC | 1 cut(s) | 826 |
| BbsI | GAAGAC | 1 cut(s) | 851 |
| Bbv12I | GWGCWC | 2 cut(s) | 196, 826 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 2 cut(s) | 290, 579 |
| BciT130I | CCWGG | 2 cut(s) | 406, 574 |
| BfaI | CTAG | 1 cut(s) | 42 |
| BfmI | CTRYAG | 2 cut(s) | 441, 814 |
| BfuAI | ACCTGC | 1 cut(s) | 141 |
| BglII | AGATCT | 2 cut(s) | 119, 680 |
| BisI | GCNGC | 1 cut(s) | 534 |
| BlpI | GCTNAGC | 1 cut(s) | 852 |
| BlsI | GCNGC | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 2 cut(s) | 406, 574 |
| BmiI | GGNNCC | 1 cut(s) | 294 |
| BmrFI | CCNGG | 2 cut(s) | 406, 574 |
| BmsI | GCATC | 4 cut(s) | 319, 409, 553, 945 |
| BpiI | GAAGAC | 1 cut(s) | 851 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 683, 715 |
| Bpu10I | CCTNAGC | 1 cut(s) | 662 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 852 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 572, 761 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 762 |
| Bse3DI | GCAATG | 1 cut(s) | 701 |
| BseBI | CCWGG | 2 cut(s) | 406, 574 |
| BseDI | CCNNGG | 3 cut(s) | 66, 572, 761 |
| BseGI | GGATG | 5 cut(s) | 235, 568, 594, 700, 874 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 762 |
| BseMI | GCAATG | 1 cut(s) | 701 |
| BseMII | CTCAG | 2 cut(s) | 630, 653 |
| BseRI | GAGGAG | 1 cut(s) | 84 |
| BseSI | GKGCMC | 1 cut(s) | 196 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BshFI | GGCC | 2 cut(s) | 65, 939 |
| BshNI | GGYRCC | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 196, 826 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 762 |
| BsmI | GAATGC | 1 cut(s) | 245 |
| BsnI | GGCC | 2 cut(s) | 65, 939 |
| Bsp1286I | GDGCHC | 2 cut(s) | 196, 826 |
| Bsp143I | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 852 |
| BspACI | CCGC | 1 cut(s) | 276 |
| BspANI | GGCC | 2 cut(s) | 65, 939 |
| BspCNI | CTCAG | 2 cut(s) | 631, 654 |
| BspLI | GGNNCC | 1 cut(s) | 294 |
| BspMI | ACCTGC | 1 cut(s) | 141 |
| BspPI | GGATC | 1 cut(s) | 677 |
| BspT107I | GGYRCC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 701 |
| BssECI | CCNNGG | 3 cut(s) | 66, 572, 761 |
| BssMI | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| BssT1I | CCWWGG | 2 cut(s) | 66, 761 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 574 |
| Bst4CI | ACNGT | 3 cut(s) | 106, 426, 818 |
| Bst6I | CTCTTC | 1 cut(s) | 793 |
| BstDEI | CTNAG | 6 cut(s) | 375, 457, 639, 662, 852, 1005 |
| BstF5I | GGATG | 5 cut(s) | 235, 568, 594, 700, 874 |
| BstHHI | GCGC | 1 cut(s) | 960 |
| BstKTI | GATC | 5 cut(s) | 122, 621, 658, 672, 683 |
| BstMBI | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 262, 350 |
| BstNI | CCWGG | 2 cut(s) | 406, 574 |
| BstNSI | RCATGY | 3 cut(s) | 32, 137, 1001 |
| BstSCI | CCNGG | 2 cut(s) | 404, 572 |
| BstSFI | CTRYAG | 2 cut(s) | 441, 814 |
| BstSLI | GKGCMC | 1 cut(s) | 196 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstV2I | GAAGAC | 1 cut(s) | 851 |
| BstX2I | RGATCY | 2 cut(s) | 119, 680 |
| BstYI | RGATCY | 2 cut(s) | 119, 680 |
| BsuRI | GGCC | 2 cut(s) | 65, 939 |
| BtsCI | GGATG | 5 cut(s) | 235, 568, 594, 700, 874 |
| BtsI | GCAGTG | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 2 cut(s) | 194, 636 |
| BveI | ACCTGC | 1 cut(s) | 141 |
| CfoI | GCGC | 1 cut(s) | 960 |
| Csp6I | GTAC | 2 cut(s) | 84, 803 |
| CviAII | CATG | 7 cut(s) | 29, 134, 386, 530, 961, 977, 998 |
| CviQI | GTAC | 2 cut(s) | 84, 803 |
| DdeI | CTNAG | 6 cut(s) | 375, 457, 639, 662, 852, 1005 |
| DpnI | GATC | 5 cut(s) | 121, 620, 657, 671, 682 |
| DpnII | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| DraI | TTTAAA | 1 cut(s) | 414 |
| EaeI | YGGCCR | 1 cut(s) | 937 |
| Eam1104I | CTCTTC | 1 cut(s) | 793 |
| EarI | CTCTTC | 1 cut(s) | 793 |
| Ecl136II | GAGCTC | 1 cut(s) | 824 |
| Eco130I | CCWWGG | 2 cut(s) | 66, 761 |
| Eco24I | GRGCYC | 1 cut(s) | 826 |
| Eco32I | GATATC | 1 cut(s) | 36 |
| Eco53kI | GAGCTC | 1 cut(s) | 824 |
| Eco57I | CTGAAG | 1 cut(s) | 584 |
| EcoICRI | GAGCTC | 1 cut(s) | 824 |
| EcoRII | CCWGG | 2 cut(s) | 404, 572 |
| EcoRV | GATATC | 1 cut(s) | 36 |
| EcoT14I | CCWWGG | 2 cut(s) | 66, 761 |
| EcoT38I | GRGCYC | 1 cut(s) | 826 |
| ErhI | CCWWGG | 2 cut(s) | 66, 761 |
| FaeI | CATG | 7 cut(s) | 32, 137, 389, 533, 964, 980, 1001 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 440, 472 |
| FatI | CATG | 7 cut(s) | 28, 133, 385, 529, 960, 976, 997 |
| Fnu4HI | GCNGC | 1 cut(s) | 534 |
| FokI | GGATG | 5 cut(s) | 242, 575, 601, 707, 881 |
| FriOI | GRGCYC | 1 cut(s) | 826 |
| Fsp4HI | GCNGC | 1 cut(s) | 534 |
| FspAI | RTGCGCAY | 1 cut(s) | 959 |
| FspBI | CTAG | 1 cut(s) | 42 |
| FspI | TGCGCA | 1 cut(s) | 959 |
| GlaI | GCGC | 1 cut(s) | 959 |
| GluI | GCNGC | 1 cut(s) | 534 |
| HaeIII | GGCC | 2 cut(s) | 65, 939 |
| HhaI | GCGC | 1 cut(s) | 960 |
| Hin1II | CATG | 7 cut(s) | 32, 137, 389, 533, 964, 980, 1001 |
| Hin6I | GCGC | 1 cut(s) | 958 |
| HinP1I | GCGC | 1 cut(s) | 958 |
| HincII | GTYRAC | 2 cut(s) | 365, 781 |
| HindII | GTYRAC | 2 cut(s) | 365, 781 |
| HinfI | GANTC | 1 cut(s) | 698 |
| HpaI | GTTAAC | 1 cut(s) | 781 |
| HphI | GGTGA | 3 cut(s) | 127, 650, 853 |
| Hpy166II | GTNNAC | 3 cut(s) | 194, 365, 781 |
| Hpy188I | TCNGA | 4 cut(s) | 270, 337, 526, 757 |
| Hpy188III | TCNNGA | 4 cut(s) | 602, 795, 896, 919 |
| Hpy8I | GTNNAC | 3 cut(s) | 194, 365, 781 |
| HpyAV | CCTTC | 4 cut(s) | 103, 108, 235, 906 |
| HpyCH4III | ACNGT | 3 cut(s) | 106, 426, 818 |
| HpyCH4IV | ACGT | 2 cut(s) | 367, 750 |
| HpyCH4V | TGCA | 5 cut(s) | 137, 194, 422, 566, 770 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 262, 350 |
| HpyF3I | CTNAG | 6 cut(s) | 375, 457, 639, 662, 852, 1005 |
| HpySE526I | ACGT | 2 cut(s) | 367, 750 |
| Hsp92II | CATG | 7 cut(s) | 32, 137, 389, 533, 964, 980, 1001 |
| HspAI | GCGC | 1 cut(s) | 958 |
| KspAI | GTTAAC | 1 cut(s) | 781 |
| Kzo9I | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| LmnI | GCTCC | 2 cut(s) | 204, 262 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 4 cut(s) | 319, 409, 553, 945 |
| MaeI | CTAG | 1 cut(s) | 42 |
| MaeII | ACGT | 2 cut(s) | 367, 750 |
| MaeIII | GTNAC | 2 cut(s) | 591, 1000 |
| MalI | GATC | 5 cut(s) | 121, 620, 657, 671, 682 |
| MboI | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| MboII | GAAGA | 3 cut(s) | 810, 856, 924 |
| MflI | RGATCY | 2 cut(s) | 119, 680 |
| MhlI | GDGCHC | 2 cut(s) | 196, 826 |
| MlsI | TGGCCA | 1 cut(s) | 939 |
| MluCI | AATT | 2 cut(s) | 317, 430 |
| MluNI | TGGCCA | 1 cut(s) | 939 |
| MlyI | GAGTC | 1 cut(s) | 692 |
| MnlI | CCTC | 6 cut(s) | 46, 102, 105, 106, 685, 717 |
| Mox20I | TGGCCA | 1 cut(s) | 939 |
| MroXI | GAANNNNTTC | 1 cut(s) | 245 |
| MscI | TGGCCA | 1 cut(s) | 939 |
| MseI | TTAA | 4 cut(s) | 320, 413, 428, 780 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| Msp20I | TGGCCA | 1 cut(s) | 939 |
| MspR9I | CCNGG | 2 cut(s) | 406, 574 |
| Mva1269I | GAATGC | 1 cut(s) | 245 |
| MvaI | CCWGG | 2 cut(s) | 406, 574 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 262, 350 |
| NdeII | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| NlaIII | CATG | 7 cut(s) | 32, 137, 389, 533, 964, 980, 1001 |
| NlaIV | GGNNCC | 1 cut(s) | 294 |
| NsbI | TGCGCA | 1 cut(s) | 959 |
| NspI | RCATGY | 3 cut(s) | 32, 137, 1001 |
| PciI | ACATGT | 2 cut(s) | 28, 997 |
| PctI | GAATGC | 1 cut(s) | 245 |
| PdmI | GAANNNNTTC | 1 cut(s) | 245 |
| PfoI | TCCNGGA | 1 cut(s) | 404 |
| PkrI | GCNGC | 1 cut(s) | 535 |
| PleI | GAGTC | 1 cut(s) | 692 |
| PpsI | GAGTC | 1 cut(s) | 692 |
| PscI | ACATGT | 2 cut(s) | 28, 997 |
| PshBI | ATTAAT | 1 cut(s) | 320 |
| Psp124BI | GAGCTC | 1 cut(s) | 826 |
| Psp1406I | AACGTT | 1 cut(s) | 750 |
| Psp6I | CCWGG | 2 cut(s) | 404, 572 |
| PspGI | CCWGG | 2 cut(s) | 404, 572 |
| PspN4I | GGNNCC | 1 cut(s) | 294 |
| PsuI | RGATCY | 2 cut(s) | 119, 680 |
| RsaI | GTAC | 2 cut(s) | 85, 804 |
| RsaNI | GTAC | 2 cut(s) | 84, 803 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SacI | GAGCTC | 1 cut(s) | 826 |
| SaqAI | TTAA | 4 cut(s) | 320, 413, 428, 780 |
| SatI | GCNGC | 1 cut(s) | 534 |
| Sau3AI | GATC | 5 cut(s) | 119, 618, 655, 669, 680 |
| SchI | GAGTC | 1 cut(s) | 692 |
| ScrFI | CCNGG | 2 cut(s) | 406, 574 |
| SduI | GDGCHC | 2 cut(s) | 196, 826 |
| SfaNI | GCATC | 4 cut(s) | 319, 409, 553, 945 |
| SfcI | CTRYAG | 2 cut(s) | 441, 814 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 2 cut(s) | 317, 430 |
| SsiI | CCGC | 1 cut(s) | 276 |
| SspMI | CTAG | 1 cut(s) | 42 |
| SstI | GAGCTC | 1 cut(s) | 826 |
| StyD4I | CCNGG | 2 cut(s) | 404, 572 |
| StyI | CCWWGG | 2 cut(s) | 66, 761 |
| TaaI | ACNGT | 3 cut(s) | 106, 426, 818 |
| TaiI | ACGT | 2 cut(s) | 370, 753 |
| TasI | AATT | 2 cut(s) | 317, 430 |
| Tru1I | TTAA | 4 cut(s) | 320, 413, 428, 780 |
| Tru9I | TTAA | 4 cut(s) | 320, 413, 428, 780 |
| TscAI | CASTG | 2 cut(s) | 201, 643 |
| TseI | GCWGC | 1 cut(s) | 533 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 2 cut(s) | 201, 643 |
| VneI | GTGCAC | 1 cut(s) | 192 |
| VspI | ATTAAT | 1 cut(s) | 320 |
| XceI | RCATGY | 3 cut(s) | 32, 137, 1001 |
| XmnI | GAANNNNTTC | 1 cut(s) | 245 |
| XspI | CTAG | 1 cut(s) | 42 |