transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 154 |
| Acc16I | TGCGCA | 1 cut(s) | 2805 |
| Acc36I | ACCTGC | 3 cut(s) | 456, 892, 1893 |
| AccB1I | GGYRCC | 3 cut(s) | 326, 764, 2044 |
| AccI | GTMKAC | 3 cut(s) | 991, 1699, 3142 |
| AccII | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| AciI | CCGC | 6 cut(s) | 46, 926, 1750, 2028, 2096, 3328 |
| AclI | AACGTT | 1 cut(s) | 2502 |
| AclWI | GGATC | 7 cut(s) | 499, 689, 1063, 1184, 1197, 2429, 3326 |
| AcoI | YGGCCR | 1 cut(s) | 2783 |
| AcsI | RAATTY | 7 cut(s) | 350, 581, 614, 775, 1263, 1280, 2684 |
| AcuI | CTGAAG | 1 cut(s) | 2336 |
| AcyI | GRCGYC | 1 cut(s) | 151 |
| AdeI | CACNNNGTG | 1 cut(s) | 1641 |
| AfaI | GTAC | 9 cut(s) | 663, 1015, 1121, 1175, 1645, 1837, 2556, 3228, 3321 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 689, 1324, 2514, 3242 |
| AflII | CTTAAG | 1 cut(s) | 1000 |
| AflIII | ACRYGT | 3 cut(s) | 1780, 2716, 3249 |
| AgeI | ACCGGT | 2 cut(s) | 1243, 1519 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3119 |
| AjnI | CCWGG | 4 cut(s) | 145, 2156, 2324, 3154 |
| AleI | CACNNNNGTG | 1 cut(s) | 449 |
| Alw21I | GWGCWC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| Alw26I | GTCTC | 2 cut(s) | 1497, 2879 |
| Alw44I | GTGCAC | 2 cut(s) | 598, 1944 |
| AlwI | GGATC | 7 cut(s) | 499, 689, 1063, 1184, 1197, 2429, 3326 |
| Ama87I | CYCGRG | 1 cut(s) | 1451 |
| AoxI | GGCC | 3 cut(s) | 1815, 2783, 3182 |
| ApaLI | GTGCAC | 2 cut(s) | 598, 1944 |
| ApeKI | GCWGC | 1 cut(s) | 2285 |
| ApoI | RAATTY | 7 cut(s) | 350, 581, 614, 775, 1263, 1280, 2684 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 377, 409 |
| AseI | ATTAAT | 1 cut(s) | 2072 |
| AsiGI | ACCGGT | 2 cut(s) | 1243, 1519 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1997, 3251 |
| AspLEI | GCGC | 3 cut(s) | 105, 1450, 2806 |
| AspS9I | GGNCC | 1 cut(s) | 3182 |
| AsuC2I | CCSGG | 1 cut(s) | 699 |
| AsuII | TTCGAA | 1 cut(s) | 2796 |
| AvaI | CYCGRG | 1 cut(s) | 1451 |
| AxyI | CCTNAGG | 2 cut(s) | 180, 300 |
| BaeGI | GKGCMC | 2 cut(s) | 602, 1948 |
| BalI | TGGCCA | 1 cut(s) | 2785 |
| BamHI | GGATCC | 1 cut(s) | 1189 |
| BanI | GGYRCC | 3 cut(s) | 326, 764, 2044 |
| BanII | GRGCYC | 2 cut(s) | 1464, 2578 |
| BbsI | GAAGAC | 3 cut(s) | 146, 2603, 2753 |
| Bbv12I | GWGCWC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| BbvCI | CCTCAGC | 1 cut(s) | 1257 |
| BbvI | GCAGC | 1 cut(s) | 2272 |
| BccI | CCATC | 7 cut(s) | 316, 940, 1318, 1441, 1596, 2042, 2331 |
| BceAI | ACGGC | 2 cut(s) | 776, 2864 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 617, 651 |
| BciT130I | CCWGG | 4 cut(s) | 147, 2158, 2326, 3156 |
| BciVI | GTATCC | 1 cut(s) | 1647 |
| BclI | TGATCA | 2 cut(s) | 555, 730 |
| BcnI | CCSGG | 1 cut(s) | 699 |
| BcoDI | GTCTC | 2 cut(s) | 1497, 2879 |
| BfaI | CTAG | 9 cut(s) | 323, 378, 462, 509, 744, 873, 1794, 3011, 3171 |
| BfmI | CTRYAG | 3 cut(s) | 2193, 2566, 3294 |
| BfoI | RGCGCY | 2 cut(s) | 106, 1451 |
| BfrI | CTTAAG | 1 cut(s) | 1000 |
| BfuAI | ACCTGC | 3 cut(s) | 456, 892, 1893 |
| BfuI | GTATCC | 1 cut(s) | 1647 |
| BglII | AGATCT | 2 cut(s) | 1871, 2432 |
| BisI | GCNGC | 1 cut(s) | 2286 |
| BlpI | GCTNAGC | 1 cut(s) | 2604 |
| BlsI | GCNGC | 1 cut(s) | 2287 |
| BmcAI | AGTACT | 1 cut(s) | 1175 |
| Bme1390I | CCNGG | 5 cut(s) | 147, 699, 2158, 2326, 3156 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3119 |
| BmeT110I | CYCGRG | 1 cut(s) | 1451 |
| BmgT120I | GGNCC | 1 cut(s) | 3182 |
| BmiI | GGNNCC | 6 cut(s) | 306, 328, 625, 766, 1191, 2046 |
| BmrFI | CCNGG | 5 cut(s) | 147, 699, 2158, 2326, 3156 |
| BmrI | ACTGGG | 1 cut(s) | 840 |
| BmsI | GCATC | 8 cut(s) | 223, 951, 1744, 2071, 2161, 2305, 2791, 2965 |
| BmuI | ACTGGG | 1 cut(s) | 840 |
| BpiI | GAAGAC | 3 cut(s) | 146, 2603, 2753 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 338, 370, 2435, 2467 |
| BpmI | CTGGAG | 1 cut(s) | 1080 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1257, 1476, 2414 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2604 |
| Bpu14I | TTCGAA | 1 cut(s) | 2796 |
| BpuEI | CTTGAG | 6 cut(s) | 120, 572, 661, 1079, 1340, 1994 |
| BpuMI | CCSGG | 1 cut(s) | 699 |
| BsaHI | GRCGYC | 1 cut(s) | 151 |
| BsaJI | CCNNGG | 7 cut(s) | 145, 411, 1818, 2324, 2513, 3154, 3236 |
| BsaWI | WCCGGW | 4 cut(s) | 1243, 1408, 1519, 2913 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1319, 1349, 1828, 1858 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 689, 1324, 2514, 3242 |
| Bse118I | RCCGGY | 3 cut(s) | 1243, 1519, 2978 |
| Bse1I | ACTGG | 4 cut(s) | 242, 835, 1072, 3335 |
| Bse21I | CCTNAGG | 2 cut(s) | 180, 300 |
| Bse3DI | GCAATG | 4 cut(s) | 210, 1350, 2453, 2760 |
| BseBI | CCWGG | 4 cut(s) | 147, 2158, 2326, 3156 |
| BseDI | CCNNGG | 7 cut(s) | 145, 411, 1818, 2324, 2513, 3154, 3236 |
| BseGI | GGATG | 9 cut(s) | 238, 556, 1607, 1987, 2320, 2346, 2452, 2626, 2876 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 689, 1324, 2514, 3242 |
| BseMI | GCAATG | 4 cut(s) | 210, 1350, 2453, 2760 |
| BseMII | CTCAG | 7 cut(s) | 83, 291, 584, 960, 1248, 1467, 2405 |
| BseNI | ACTGG | 4 cut(s) | 242, 835, 1072, 3335 |
| BseRI | GAGGAG | 6 cut(s) | 317, 1343, 1346, 1364, 1679, 1836 |
| BseSI | GKGCMC | 2 cut(s) | 602, 1948 |
| BseXI | GCAGC | 1 cut(s) | 2272 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| BsgI | GTGCAG | 3 cut(s) | 920, 1178, 3237 |
| Bsh1236I | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| BshFI | GGCC | 3 cut(s) | 1817, 2785, 3184 |
| BshNI | GGYRCC | 3 cut(s) | 326, 764, 2044 |
| BshTI | ACCGGT | 2 cut(s) | 1243, 1519 |
| BsiHKAI | GWGCWC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1451 |
| BsiSI | CCGG | 6 cut(s) | 698, 1244, 1409, 1520, 2914, 2979 |
| BslFI | GGGAC | 2 cut(s) | 405, 714 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 689, 1324, 2514, 3242 |
| BsmAI | GTCTC | 2 cut(s) | 1497, 2879 |
| BsmBI | CGTCTC | 1 cut(s) | 1497 |
| BsmFI | GGGAC | 2 cut(s) | 405, 714 |
| BsmI | GAATGC | 3 cut(s) | 376, 1997, 2670 |
| BsnI | GGCC | 3 cut(s) | 1817, 2785, 3184 |
| BsoBI | CYCGRG | 1 cut(s) | 1451 |
| Bsp119I | TTCGAA | 1 cut(s) | 2796 |
| Bsp1286I | GDGCHC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2604 |
| BspACI | CCGC | 6 cut(s) | 46, 926, 1750, 2028, 2096, 3328 |
| BspANI | GGCC | 3 cut(s) | 1817, 2785, 3184 |
| BspCNI | CTCAG | 7 cut(s) | 82, 292, 583, 961, 1249, 1468, 2406 |
| BspFNI | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| BspHI | TCATGA | 1 cut(s) | 3076 |
| BspLI | GGNNCC | 6 cut(s) | 306, 328, 625, 766, 1191, 2046 |
| BspMAI | CTGCAG | 1 cut(s) | 3298 |
| BspMI | ACCTGC | 3 cut(s) | 456, 892, 1893 |
| BspPI | GGATC | 7 cut(s) | 499, 689, 1063, 1184, 1197, 2429, 3326 |
| BspQI | GCTCTTC | 2 cut(s) | 267, 756 |
| BspT104I | TTCGAA | 1 cut(s) | 2796 |
| BspT107I | GGYRCC | 3 cut(s) | 326, 764, 2044 |
| BspTI | CTTAAG | 1 cut(s) | 1000 |
| BsrDI | GCAATG | 4 cut(s) | 210, 1350, 2453, 2760 |
| BsrFI | RCCGGY | 3 cut(s) | 1243, 1519, 2978 |
| BsrI | ACTGG | 4 cut(s) | 242, 835, 1072, 3335 |
| BssAI | RCCGGY | 3 cut(s) | 1243, 1519, 2978 |
| BssECI | CCNNGG | 7 cut(s) | 145, 411, 1818, 2324, 2513, 3154, 3236 |
| BssNI | GRCGYC | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 2 cut(s) | 1818, 2513 |
| Bst2UI | CCWGG | 4 cut(s) | 147, 2158, 2326, 3156 |
| Bst6I | CTCTTC | 5 cut(s) | 174, 267, 756, 1410, 2545 |
| BstACI | GRCGYC | 1 cut(s) | 151 |
| BstAFI | CTTAAG | 1 cut(s) | 1000 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 295 |
| BstBI | TTCGAA | 1 cut(s) | 2796 |
| BstC8I | GCNNGC | 3 cut(s) | 1428, 1593, 3294 |
| BstDSI | CCRYGG | 1 cut(s) | 411 |
| BstF5I | GGATG | 9 cut(s) | 238, 556, 1607, 1987, 2320, 2346, 2452, 2626, 2876 |
| BstFNI | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| BstH2I | RGCGCY | 2 cut(s) | 106, 1451 |
| BstHHI | GCGC | 3 cut(s) | 105, 1450, 2806 |
| BstMAI | GTCTC | 2 cut(s) | 1497, 2879 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 111, 295, 304, 2014, 2102, 2941, 3215, 3346 |
| BstNI | CCWGG | 4 cut(s) | 147, 2158, 2326, 3156 |
| BstNSI | RCATGY | 3 cut(s) | 1784, 1889, 2720 |
| BstSCI | CCNGG | 5 cut(s) | 145, 697, 2156, 2324, 3154 |
| BstSFI | CTRYAG | 3 cut(s) | 2193, 2566, 3294 |
| BstSLI | GKGCMC | 2 cut(s) | 602, 1948 |
| BstUI | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| BstV1I | GCAGC | 1 cut(s) | 2272 |
| BstV2I | GAAGAC | 3 cut(s) | 146, 2603, 2753 |
| BstX2I | RGATCY | 5 cut(s) | 504, 1068, 1189, 1871, 2432 |
| BstYI | RGATCY | 5 cut(s) | 504, 1068, 1189, 1871, 2432 |
| Bsu36I | CCTNAGG | 2 cut(s) | 180, 300 |
| BsuI | GTATCC | 1 cut(s) | 1647 |
| BsuRI | GGCC | 3 cut(s) | 1817, 2785, 3184 |
| BtgI | CCRYGG | 1 cut(s) | 411 |
| BtgZI | GCGATG | 1 cut(s) | 1767 |
| BtsCI | GGATG | 9 cut(s) | 238, 556, 1607, 1987, 2320, 2346, 2452, 2626, 2876 |
| BtsI | GCAGTG | 2 cut(s) | 43, 1946 |
| BtsIMutI | CAGTG | 4 cut(s) | 43, 249, 1946, 3342 |
| BveI | ACCTGC | 3 cut(s) | 456, 892, 1893 |
| Cac8I | GCNNGC | 3 cut(s) | 1428, 1593, 3294 |
| CciI | TCATGA | 1 cut(s) | 3076 |
| CfoI | GCGC | 3 cut(s) | 105, 1450, 2806 |
| Cfr10I | RCCGGY | 3 cut(s) | 1243, 1519, 2978 |
| Cfr13I | GGNCC | 1 cut(s) | 3182 |
| CseI | GACGC | 1 cut(s) | 3128 |
| Csp6I | GTAC | 9 cut(s) | 662, 1014, 1120, 1174, 1644, 1836, 2555, 3227, 3320 |
| CspAI | ACCGGT | 2 cut(s) | 1243, 1519 |
| CviQI | GTAC | 9 cut(s) | 662, 1014, 1120, 1174, 1644, 1836, 2555, 3227, 3320 |
| DraI | TTTAAA | 1 cut(s) | 2166 |
| DraIII | CACNNNGTG | 1 cut(s) | 1641 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3119 |
| EaeI | YGGCCR | 1 cut(s) | 2783 |
| Eam1104I | CTCTTC | 5 cut(s) | 174, 267, 756, 1410, 2545 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3119 |
| EarI | CTCTTC | 5 cut(s) | 174, 267, 756, 1410, 2545 |
| EciI | GGCGGA | 1 cut(s) | 35 |
| Ecl136II | GAGCTC | 2 cut(s) | 1462, 2576 |
| Eco130I | CCWWGG | 2 cut(s) | 1818, 2513 |
| Eco24I | GRGCYC | 2 cut(s) | 1464, 2578 |
| Eco32I | GATATC | 2 cut(s) | 1618, 1788 |
| Eco53kI | GAGCTC | 2 cut(s) | 1462, 2576 |
| Eco57I | CTGAAG | 1 cut(s) | 2336 |
| Eco81I | CCTNAGG | 2 cut(s) | 180, 300 |
| Eco88I | CYCGRG | 1 cut(s) | 1451 |
| EcoICRI | GAGCTC | 2 cut(s) | 1462, 2576 |
| EcoRI | GAATTC | 1 cut(s) | 350 |
| EcoRII | CCWGG | 4 cut(s) | 145, 2156, 2324, 3154 |
| EcoRV | GATATC | 2 cut(s) | 1618, 1788 |
| EcoT14I | CCWWGG | 2 cut(s) | 1818, 2513 |
| EcoT38I | GRGCYC | 2 cut(s) | 1464, 2578 |
| ErhI | CCWWGG | 2 cut(s) | 1818, 2513 |
| Esp3I | CGTCTC | 1 cut(s) | 1497 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1026, 1058, 2192, 2224, 3085, 3117, 3111, 3143 |
| FaqI | GGGAC | 2 cut(s) | 405, 714 |
| FauNDI | CATATG | 1 cut(s) | 787 |
| FbaI | TGATCA | 2 cut(s) | 555, 730 |
| FblI | GTMKAC | 3 cut(s) | 991, 1699, 3142 |
| Fnu4HI | GCNGC | 1 cut(s) | 2286 |
| FokI | GGATG | 9 cut(s) | 245, 563, 1614, 1994, 2327, 2353, 2459, 2633, 2883 |
| FriOI | GRGCYC | 2 cut(s) | 1464, 2578 |
| Fsp4HI | GCNGC | 1 cut(s) | 2286 |
| FspAI | RTGCGCAY | 1 cut(s) | 2805 |
| FspBI | CTAG | 9 cut(s) | 323, 378, 462, 509, 744, 873, 1794, 3011, 3171 |
| FspI | TGCGCA | 1 cut(s) | 2805 |
| GlaI | GCGC | 3 cut(s) | 104, 1449, 2805 |
| GluI | GCNGC | 1 cut(s) | 2286 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| GsuI | CTGGAG | 1 cut(s) | 1080 |
| HaeII | RGCGCY | 2 cut(s) | 106, 1451 |
| HaeIII | GGCC | 3 cut(s) | 1817, 2785, 3184 |
| HapII | CCGG | 6 cut(s) | 698, 1244, 1409, 1520, 2914, 2979 |
| HgaI | GACGC | 1 cut(s) | 3128 |
| HhaI | GCGC | 3 cut(s) | 105, 1450, 2806 |
| Hin1I | GRCGYC | 1 cut(s) | 151 |
| Hin6I | GCGC | 3 cut(s) | 103, 1448, 2804 |
| HinP1I | GCGC | 3 cut(s) | 103, 1448, 2804 |
| HincII | GTYRAC | 5 cut(s) | 142, 188, 1700, 2117, 2533 |
| HindII | GTYRAC | 5 cut(s) | 142, 188, 1700, 2117, 2533 |
| HinfI | GANTC | 8 cut(s) | 392, 565, 1088, 1361, 2450, 3019, 3038, 3048 |
| HpaI | GTTAAC | 1 cut(s) | 2533 |
| HpaII | CCGG | 6 cut(s) | 698, 1244, 1409, 1520, 2914, 2979 |
| Hpy188I | TCNGA | 8 cut(s) | 213, 970, 1443, 2022, 2089, 2278, 2509, 3237 |
| Hpy99I | CGWCG | 1 cut(s) | 1701 |
| HpyCH4IV | ACGT | 8 cut(s) | 151, 513, 703, 1422, 1696, 2119, 2502, 3251 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 111, 295, 304, 2014, 2102, 2941, 3215, 3346 |
| HpySE526I | ACGT | 8 cut(s) | 151, 513, 703, 1422, 1696, 2119, 2502, 3251 |
| Hsp92I | GRCGYC | 1 cut(s) | 151 |
| HspAI | GCGC | 3 cut(s) | 103, 1448, 2804 |
| Ksp22I | TGATCA | 2 cut(s) | 555, 730 |
| KspAI | GTTAAC | 1 cut(s) | 2533 |
| LguI | GCTCTTC | 2 cut(s) | 267, 756 |
| LmnI | GCTCC | 6 cut(s) | 304, 1956, 2014, 2919, 3330, 3346 |
| Lsp1109I | GCAGC | 1 cut(s) | 2272 |
| LweI | GCATC | 8 cut(s) | 223, 951, 1744, 2071, 2161, 2305, 2791, 2965 |
| MaeI | CTAG | 9 cut(s) | 323, 378, 462, 509, 744, 873, 1794, 3011, 3171 |
| MaeII | ACGT | 8 cut(s) | 151, 513, 703, 1422, 1696, 2119, 2502, 3251 |
| MaeIII | GTNAC | 6 cut(s) | 468, 866, 2343, 2708, 2729, 2994 |
| MfeI | CAATTG | 3 cut(s) | 87, 1308, 1596 |
| MflI | RGATCY | 5 cut(s) | 504, 1068, 1189, 1871, 2432 |
| MhlI | GDGCHC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| MlsI | TGGCCA | 1 cut(s) | 2785 |
| MluNI | TGGCCA | 1 cut(s) | 2785 |
| MlyI | GAGTC | 4 cut(s) | 401, 1355, 2444, 3047 |
| MmeI | TCCRAC | 4 cut(s) | 145, 528, 1698, 3091 |
| Mox20I | TGGCCA | 1 cut(s) | 2785 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1997, 3251 |
| MscI | TGGCCA | 1 cut(s) | 2785 |
| MslI | CAYNNNNRTG | 4 cut(s) | 449, 1211, 1959, 2715 |
| Msp20I | TGGCCA | 1 cut(s) | 2785 |
| MspA1I | CMGCKG | 1 cut(s) | 926 |
| MspCI | CTTAAG | 1 cut(s) | 1000 |
| MspI | CCGG | 6 cut(s) | 698, 1244, 1409, 1520, 2914, 2979 |
| MspR9I | CCNGG | 5 cut(s) | 147, 699, 2158, 2326, 3156 |
| MunI | CAATTG | 3 cut(s) | 87, 1308, 1596 |
| Mva1269I | GAATGC | 3 cut(s) | 376, 1997, 2670 |
| MvaI | CCWGG | 4 cut(s) | 147, 2158, 2326, 3156 |
| MvnI | CGCG | 3 cut(s) | 1752, 3139, 3330 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 111, 295, 304, 2014, 2102, 2941, 3215, 3346 |
| NciI | CCSGG | 1 cut(s) | 699 |
| NdeI | CATATG | 1 cut(s) | 787 |
| NlaIV | GGNNCC | 6 cut(s) | 306, 328, 625, 766, 1191, 2046 |
| NmuCI | GTSAC | 2 cut(s) | 2708, 2729 |
| NsbI | TGCGCA | 1 cut(s) | 2805 |
| NspI | RCATGY | 3 cut(s) | 1784, 1889, 2720 |
| NspV | TTCGAA | 1 cut(s) | 2796 |
| OliI | CACNNNNGTG | 1 cut(s) | 449 |
| PagI | TCATGA | 1 cut(s) | 3076 |
| PciI | ACATGT | 2 cut(s) | 1780, 2716 |
| PciSI | GCTCTTC | 2 cut(s) | 267, 756 |
| PctI | GAATGC | 3 cut(s) | 376, 1997, 2670 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1997, 3251 |
| PfeI | GAWTC | 4 cut(s) | 565, 1088, 3019, 3048 |
| PfoI | TCCNGGA | 2 cut(s) | 697, 2156 |
| PinAI | ACCGGT | 2 cut(s) | 1243, 1519 |
| PkrI | GCNGC | 1 cut(s) | 2287 |
| PleI | GAGTC | 4 cut(s) | 400, 1355, 2444, 3046 |
| PpsI | GAGTC | 4 cut(s) | 400, 1355, 2444, 3046 |
| PscI | ACATGT | 2 cut(s) | 1780, 2716 |
| PshBI | ATTAAT | 1 cut(s) | 2072 |
| Psp124BI | GAGCTC | 2 cut(s) | 1464, 2578 |
| Psp1406I | AACGTT | 1 cut(s) | 2502 |
| Psp6I | CCWGG | 4 cut(s) | 145, 2156, 2324, 3154 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspGI | CCWGG | 4 cut(s) | 145, 2156, 2324, 3154 |
| PspN4I | GGNNCC | 6 cut(s) | 306, 328, 625, 766, 1191, 2046 |
| PspPI | GGNCC | 1 cut(s) | 3182 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 997, 1029, 3151, 3183 |
| PstI | CTGCAG | 1 cut(s) | 3298 |
| PsuI | RGATCY | 5 cut(s) | 504, 1068, 1189, 1871, 2432 |
| RsaI | GTAC | 9 cut(s) | 663, 1015, 1121, 1175, 1645, 1837, 2556, 3228, 3321 |
| RsaNI | GTAC | 9 cut(s) | 662, 1014, 1120, 1174, 1644, 1836, 2555, 3227, 3320 |
| RseI | CAYNNNNRTG | 4 cut(s) | 449, 1211, 1959, 2715 |
| SacI | GAGCTC | 2 cut(s) | 1464, 2578 |
| SalI | GTCGAC | 1 cut(s) | 1698 |
| SapI | GCTCTTC | 2 cut(s) | 267, 756 |
| SatI | GCNGC | 1 cut(s) | 2286 |
| Sau96I | GGNCC | 1 cut(s) | 3182 |
| ScaI | AGTACT | 1 cut(s) | 1175 |
| SchI | GAGTC | 4 cut(s) | 401, 1355, 2444, 3047 |
| ScrFI | CCNGG | 5 cut(s) | 147, 699, 2158, 2326, 3156 |
| SduI | GDGCHC | 5 cut(s) | 602, 751, 1464, 1948, 2578 |
| SfaNI | GCATC | 8 cut(s) | 223, 951, 1744, 2071, 2161, 2305, 2791, 2965 |
| SfcI | CTRYAG | 3 cut(s) | 2193, 2566, 3294 |
| SfuI | TTCGAA | 1 cut(s) | 2796 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 449, 1211, 1959, 2715 |
| SmlI | CTYRAG | 7 cut(s) | 135, 587, 640, 1000, 1094, 1319, 2009 |
| SmoI | CTYRAG | 7 cut(s) | 135, 587, 640, 1000, 1094, 1319, 2009 |
| SsiI | CCGC | 6 cut(s) | 46, 926, 1750, 2028, 2096, 3328 |
| SspI | AATATT | 1 cut(s) | 538 |
| SspMI | CTAG | 9 cut(s) | 323, 378, 462, 509, 744, 873, 1794, 3011, 3171 |
| SstI | GAGCTC | 2 cut(s) | 1464, 2578 |
| StyD4I | CCNGG | 5 cut(s) | 145, 697, 2156, 2324, 3154 |
| StyI | CCWWGG | 2 cut(s) | 1818, 2513 |
| TaiI | ACGT | 8 cut(s) | 154, 516, 706, 1425, 1699, 2122, 2505, 3254 |
| TaqI | TCGA | 7 cut(s) | 401, 1209, 1278, 1699, 2796, 2883, 3222 |
| TaqII | GACCGA | 1 cut(s) | 846 |
| TatI | WGTACW | 5 cut(s) | 661, 1119, 1173, 1643, 3319 |
| TfiI | GAWTC | 4 cut(s) | 565, 1088, 3019, 3048 |
| TscAI | CASTG | 4 cut(s) | 43, 249, 1953, 3342 |
| TseFI | GTSAC | 2 cut(s) | 2708, 2729 |
| TseI | GCWGC | 1 cut(s) | 2285 |
| Tsp45I | GTSAC | 2 cut(s) | 2708, 2729 |
| TspDTI | ATGAA | 7 cut(s) | 207, 821, 1047, 1156, 2771, 2975, 3065 |
| TspGWI | ACGGA | 2 cut(s) | 1994, 3279 |
| TspRI | CASTG | 4 cut(s) | 43, 249, 1953, 3342 |
| Vha464I | CTTAAG | 1 cut(s) | 1000 |
| VneI | GTGCAC | 2 cut(s) | 598, 1944 |
| VspI | ATTAAT | 1 cut(s) | 2072 |
| XapI | RAATTY | 7 cut(s) | 350, 581, 614, 775, 1263, 1280, 2684 |
| XceI | RCATGY | 3 cut(s) | 1784, 1889, 2720 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 264 |
| XmiI | GTMKAC | 3 cut(s) | 991, 1699, 3142 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1997, 3251 |
| XspI | CTAG | 9 cut(s) | 323, 378, 462, 509, 744, 873, 1794, 3011, 3171 |
| ZraI | GACGTC | 1 cut(s) | 152 |
| ZrmI | AGTACT | 1 cut(s) | 1175 |