protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 102 - 194 | 9.7e-20 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 724 |
| Acc16I | TGCGCA | 1 cut(s) | 2268 |
| Acc36I | ACCTGC | 2 cut(s) | 142, 2008 |
| Acc65I | GGTACC | 1 cut(s) | 1298 |
| AccB1I | GGYRCC | 3 cut(s) | 1298, 1390, 2500 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 339 |
| AccI | GTMKAC | 2 cut(s) | 2142, 2441 |
| AciI | CCGC | 5 cut(s) | 25, 98, 1358, 2209, 2294 |
| AclWI | GGATC | 6 cut(s) | 628, 935, 970, 1445, 1805, 2538 |
| AcsI | RAATTY | 8 cut(s) | 239, 907, 1697, 1791, 2080, 2165, 2230, 2273 |
| AcuI | CTGAAG | 1 cut(s) | 1095 |
| AfaI | GTAC | 6 cut(s) | 638, 894, 1045, 1145, 1300, 1717 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 97, 140, 339, 533, 984, 1076, 2830 |
| AflII | CTTAAG | 1 cut(s) | 2516 |
| AflIII | ACRYGT | 4 cut(s) | 709, 2298, 2378, 2693 |
| AgeI | ACCGGT | 2 cut(s) | 49, 2851 |
| AjiI | CACGTC | 4 cut(s) | 382, 710, 2299, 2379 |
| AjnI | CCWGG | 7 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1982, 2014 |
| AleI | CACNNNNGTG | 1 cut(s) | 2696 |
| Alw21I | GWGCWC | 4 cut(s) | 81, 165, 839, 2370 |
| Alw26I | GTCTC | 3 cut(s) | 1774, 2369, 2558 |
| AlwI | GGATC | 6 cut(s) | 628, 935, 970, 1445, 1805, 2538 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 721 |
| AoxI | GGCC | 5 cut(s) | 330, 574, 1210, 2406, 2936 |
| ApeKI | GCWGC | 6 cut(s) | 22, 28, 31, 864, 1198, 1818 |
| ApoI | RAATTY | 8 cut(s) | 239, 907, 1697, 1791, 2080, 2165, 2230, 2273 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1117, 1149, 2124, 2156, 2831, 2863 |
| AseI | ATTAAT | 2 cut(s) | 1545, 1650 |
| AsiGI | ACCGGT | 2 cut(s) | 49, 2851 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2007 |
| Asp718I | GGTACC | 1 cut(s) | 1298 |
| AspA2I | CCTAGG | 1 cut(s) | 1876 |
| AspLEI | GCGC | 1 cut(s) | 2269 |
| AspS9I | GGNCC | 1 cut(s) | 1013 |
| AsuC2I | CCSGG | 1 cut(s) | 2878 |
| AsuNHI | GCTAGC | 1 cut(s) | 1963 |
| AvaII | GGWCC | 1 cut(s) | 1013 |
| AvrII | CCTAGG | 1 cut(s) | 1876 |
| BaeGI | GKGCMC | 1 cut(s) | 1395 |
| BanI | GGYRCC | 3 cut(s) | 1298, 1390, 2500 |
| BanII | GRGCYC | 3 cut(s) | 81, 165, 2370 |
| BbsI | GAAGAC | 5 cut(s) | 71, 222, 1732, 2110, 2758 |
| Bbv12I | GWGCWC | 4 cut(s) | 81, 165, 839, 2370 |
| BbvI | GCAGC | 6 cut(s) | 18, 34, 40, 851, 1210, 1830 |
| BceAI | ACGGC | 1 cut(s) | 2613 |
| BciT130I | CCWGG | 7 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737 |
| BciVI | GTATCC | 2 cut(s) | 966, 2223 |
| BcnI | CCSGG | 1 cut(s) | 2878 |
| BcoDI | GTCTC | 3 cut(s) | 1774, 2369, 2558 |
| BfaI | CTAG | 6 cut(s) | 1596, 1877, 1922, 1928, 1964, 2804 |
| BfmI | CTRYAG | 1 cut(s) | 900 |
| BfrI | CTTAAG | 1 cut(s) | 2516 |
| BfuAI | ACCTGC | 2 cut(s) | 142, 2008 |
| BfuI | GTATCC | 2 cut(s) | 966, 2223 |
| BglII | AGATCT | 1 cut(s) | 1973 |
| BisI | GCNGC | 7 cut(s) | 23, 26, 29, 32, 865, 1199, 1819 |
| BlnI | CCTAGG | 1 cut(s) | 1876 |
| BlsI | GCNGC | 7 cut(s) | 24, 27, 30, 33, 866, 1200, 1820 |
| Bme1390I | CCNGG | 8 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737, 2878 |
| Bme18I | GGWCC | 1 cut(s) | 1013 |
| BmgBI | CACGTC | 4 cut(s) | 382, 710, 2299, 2379 |
| BmgT120I | GGNCC | 1 cut(s) | 1013 |
| BmiI | GGNNCC | 7 cut(s) | 503, 817, 1117, 1300, 1392, 1762, 2502 |
| BmrFI | CCNGG | 8 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737, 2878 |
| BmrI | ACTGGG | 1 cut(s) | 1572 |
| BmtI | GCTAGC | 1 cut(s) | 1967 |
| BmuI | ACTGGG | 1 cut(s) | 1572 |
| BpiI | GAAGAC | 5 cut(s) | 71, 222, 1732, 2110, 2758 |
| BpmI | CTGGAG | 3 cut(s) | 123, 636, 1314 |
| BpuEI | CTTGAG | 7 cut(s) | 241, 1005, 1014, 1056, 1688, 2264, 2435 |
| BpuMI | CCSGG | 1 cut(s) | 2878 |
| BsaJI | CCNNGG | 6 cut(s) | 819, 1009, 1876, 2160, 2341, 2736 |
| BsaWI | WCCGGW | 6 cut(s) | 49, 268, 452, 984, 2527, 2851 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 807, 837, 1111, 1141, 1752, 1782 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 97, 140, 339, 533, 984, 1076, 2830 |
| Bse118I | RCCGGY | 2 cut(s) | 49, 2851 |
| Bse1I | ACTGG | 2 cut(s) | 175, 1578 |
| Bse3DI | GCAATG | 1 cut(s) | 2211 |
| BseBI | CCWGG | 7 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737 |
| BseDI | CCNNGG | 6 cut(s) | 819, 1009, 1876, 2160, 2341, 2736 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 97, 140, 339, 533, 984, 1076, 2830 |
| BseMI | GCAATG | 1 cut(s) | 2211 |
| BseMII | CTCAG | 2 cut(s) | 178, 803 |
| BseNI | ACTGG | 2 cut(s) | 175, 1578 |
| BseRI | GAGGAG | 4 cut(s) | 902, 1427, 2436, 2624 |
| BseSI | GKGCMC | 1 cut(s) | 1395 |
| BseXI | GCAGC | 6 cut(s) | 18, 34, 40, 851, 1210, 1830 |
| BsgI | GTGCAG | 1 cut(s) | 2036 |
| BshFI | GGCC | 5 cut(s) | 332, 576, 1212, 2408, 2938 |
| BshNI | GGYRCC | 3 cut(s) | 1298, 1390, 2500 |
| BshTI | ACCGGT | 2 cut(s) | 49, 2851 |
| BsiHKAI | GWGCWC | 4 cut(s) | 81, 165, 839, 2370 |
| BsiSI | CCGG | 7 cut(s) | 50, 269, 453, 985, 2528, 2852, 2877 |
| BslFI | GGGAC | 4 cut(s) | 73, 166, 392, 485 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 97, 140, 339, 533, 984, 1076, 2830 |
| BsmAI | GTCTC | 3 cut(s) | 1774, 2369, 2558 |
| BsmBI | CGTCTC | 1 cut(s) | 2369 |
| BsmFI | GGGAC | 4 cut(s) | 73, 166, 392, 485 |
| BsmI | GAATGC | 6 cut(s) | 105, 117, 280, 685, 1261, 1867 |
| BsnI | GGCC | 5 cut(s) | 332, 576, 1212, 2408, 2938 |
| Bsp1286I | GDGCHC | 5 cut(s) | 81, 165, 839, 1395, 2370 |
| Bsp1407I | TGTACA | 1 cut(s) | 1715 |
| Bsp19I | CCATGG | 3 cut(s) | 819, 2160, 2341 |
| BspACI | CCGC | 5 cut(s) | 25, 98, 1358, 2209, 2294 |
| BspANI | GGCC | 5 cut(s) | 332, 576, 1212, 2408, 2938 |
| BspCNI | CTCAG | 2 cut(s) | 177, 802 |
| BspHI | TCATGA | 3 cut(s) | 291, 1363, 2112 |
| BspLI | GGNNCC | 7 cut(s) | 503, 817, 1117, 1300, 1392, 1762, 2502 |
| BspMI | ACCTGC | 2 cut(s) | 142, 2008 |
| BspOI | GCTAGC | 1 cut(s) | 1967 |
| BspPI | GGATC | 6 cut(s) | 628, 935, 970, 1445, 1805, 2538 |
| BspT107I | GGYRCC | 3 cut(s) | 1298, 1390, 2500 |
| BspTI | CTTAAG | 1 cut(s) | 2516 |
| BsrDI | GCAATG | 1 cut(s) | 2211 |
| BsrFI | RCCGGY | 2 cut(s) | 49, 2851 |
| BsrGI | TGTACA | 1 cut(s) | 1715 |
| BsrI | ACTGG | 2 cut(s) | 175, 1578 |
| BssAI | RCCGGY | 2 cut(s) | 49, 2851 |
| BssECI | CCNNGG | 6 cut(s) | 819, 1009, 1876, 2160, 2341, 2736 |
| BssNAI | GTATAC | 1 cut(s) | 2442 |
| BssT1I | CCWWGG | 5 cut(s) | 819, 1009, 1876, 2160, 2341 |
| Bst1107I | GTATAC | 1 cut(s) | 2442 |
| Bst2UI | CCWGG | 7 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737 |
| Bst4CI | ACNGT | 4 cut(s) | 723, 1043, 1185, 2887 |
| Bst6I | CTCTTC | 3 cut(s) | 1404, 1599, 2712 |
| BstAFI | CTTAAG | 1 cut(s) | 2516 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 680 |
| BstAUI | TGTACA | 1 cut(s) | 1715 |
| BstC8I | GCNNGC | 4 cut(s) | 512, 1326, 1965, 2149 |
| BstDEI | CTNAG | 2 cut(s) | 164, 789 |
| BstDSI | CCRYGG | 3 cut(s) | 819, 2160, 2341 |
| BstEII | GGTNACC | 2 cut(s) | 204, 848 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 138, 1074 |
| BstHHI | GCGC | 1 cut(s) | 2269 |
| BstMAI | GTCTC | 3 cut(s) | 1774, 2369, 2558 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 28, 31, 671, 680, 922, 1198, 1276, 1285, 2291 |
| BstNI | CCWGG | 7 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737 |
| BstNSI | RCATGY | 3 cut(s) | 899, 1403, 2697 |
| BstPI | GGTNACC | 2 cut(s) | 204, 848 |
| BstSCI | CCNGG | 8 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735, 2876 |
| BstSFI | CTRYAG | 1 cut(s) | 900 |
| BstSLI | GKGCMC | 1 cut(s) | 1395 |
| BstV1I | GCAGC | 6 cut(s) | 18, 34, 40, 851, 1210, 1830 |
| BstV2I | GAAGAC | 5 cut(s) | 71, 222, 1732, 2110, 2758 |
| BstX2I | RGATCY | 3 cut(s) | 1450, 1810, 1973 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1461 |
| BstYI | RGATCY | 3 cut(s) | 1450, 1810, 1973 |
| BstZ17I | GTATAC | 1 cut(s) | 2442 |
| BsuI | GTATCC | 2 cut(s) | 966, 2223 |
| BsuRI | GGCC | 5 cut(s) | 332, 576, 1212, 2408, 2938 |
| BtgI | CCRYGG | 3 cut(s) | 819, 2160, 2341 |
| BtrI | CACGTC | 4 cut(s) | 382, 710, 2299, 2379 |
| BtsIMutI | CAGTG | 1 cut(s) | 719 |
| BveI | ACCTGC | 2 cut(s) | 142, 2008 |
| Cac8I | GCNNGC | 4 cut(s) | 512, 1326, 1965, 2149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 721 |
| CciI | TCATGA | 3 cut(s) | 291, 1363, 2112 |
| CfoI | GCGC | 1 cut(s) | 2269 |
| Cfr10I | RCCGGY | 2 cut(s) | 49, 2851 |
| Cfr13I | GGNCC | 1 cut(s) | 1013 |
| CseI | GACGC | 2 cut(s) | 1055, 2076 |
| Csp6I | GTAC | 6 cut(s) | 637, 893, 1044, 1144, 1299, 1716 |
| CspAI | ACCGGT | 2 cut(s) | 49, 2851 |
| CviQI | GTAC | 6 cut(s) | 637, 893, 1044, 1144, 1299, 1716 |
| DdeI | CTNAG | 2 cut(s) | 164, 789 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 724 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 724 |
| Eam1104I | CTCTTC | 3 cut(s) | 1404, 1599, 2712 |
| EarI | CTCTTC | 3 cut(s) | 1404, 1599, 2712 |
| Ecl136II | GAGCTC | 3 cut(s) | 79, 163, 2368 |
| Eco130I | CCWWGG | 5 cut(s) | 819, 1009, 1876, 2160, 2341 |
| Eco24I | GRGCYC | 3 cut(s) | 81, 165, 2370 |
| Eco32I | GATATC | 4 cut(s) | 289, 598, 751, 2251 |
| Eco47I | GGWCC | 1 cut(s) | 1013 |
| Eco53kI | GAGCTC | 3 cut(s) | 79, 163, 2368 |
| Eco57I | CTGAAG | 1 cut(s) | 1095 |
| Eco91I | GGTNACC | 2 cut(s) | 204, 848 |
| EcoICRI | GAGCTC | 3 cut(s) | 79, 163, 2368 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 138, 1074 |
| EcoO65I | GGTNACC | 2 cut(s) | 204, 848 |
| EcoRI | GAATTC | 3 cut(s) | 239, 2080, 2165 |
| EcoRII | CCWGG | 7 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735 |
| EcoRV | GATATC | 4 cut(s) | 289, 598, 751, 2251 |
| EcoT14I | CCWWGG | 5 cut(s) | 819, 1009, 1876, 2160, 2341 |
| EcoT22I | ATGCAT | 3 cut(s) | 610, 1099, 1401 |
| EcoT38I | GRGCYC | 3 cut(s) | 81, 165, 2370 |
| ErhI | CCWWGG | 5 cut(s) | 819, 1009, 1876, 2160, 2341 |
| Esp3I | CGTCTC | 1 cut(s) | 2369 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 383, 415, 1995, 2027 |
| FaqI | GGGAC | 4 cut(s) | 73, 166, 392, 485 |
| FauI | CCCGC | 1 cut(s) | 91 |
| FblI | GTMKAC | 2 cut(s) | 2142, 2441 |
| Fnu4HI | GCNGC | 7 cut(s) | 23, 26, 29, 32, 865, 1199, 1819 |
| FriOI | GRGCYC | 3 cut(s) | 81, 165, 2370 |
| Fsp4HI | GCNGC | 7 cut(s) | 23, 26, 29, 32, 865, 1199, 1819 |
| FspBI | CTAG | 6 cut(s) | 1596, 1877, 1922, 1928, 1964, 2804 |
| FspI | TGCGCA | 1 cut(s) | 2268 |
| GlaI | GCGC | 1 cut(s) | 2268 |
| GluI | GCNGC | 7 cut(s) | 23, 26, 29, 32, 865, 1199, 1819 |
| GsuI | CTGGAG | 3 cut(s) | 123, 636, 1314 |
| HaeIII | GGCC | 5 cut(s) | 332, 576, 1212, 2408, 2938 |
| HapII | CCGG | 7 cut(s) | 50, 269, 453, 985, 2528, 2852, 2877 |
| HgaI | GACGC | 2 cut(s) | 1055, 2076 |
| HhaI | GCGC | 1 cut(s) | 2269 |
| Hin6I | GCGC | 1 cut(s) | 2267 |
| HinP1I | GCGC | 1 cut(s) | 2267 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 4 cut(s) | 550, 1107, 1286, 1500 |
| HinfI | GANTC | 7 cut(s) | 743, 970, 1126, 2069, 2399, 2707, 2834 |
| HpaII | CCGG | 7 cut(s) | 50, 269, 453, 985, 2528, 2852, 2877 |
| Hpy166II | GTNNAC | 7 cut(s) | 558, 1046, 1083, 1520, 1716, 2143, 2442 |
| Hpy188I | TCNGA | 7 cut(s) | 167, 321, 748, 1528, 1989, 2706, 2833 |
| Hpy8I | GTNNAC | 7 cut(s) | 558, 1046, 1083, 1520, 1716, 2143, 2442 |
| Hpy99I | CGWCG | 1 cut(s) | 115 |
| HpyAV | CCTTC | 6 cut(s) | 295, 1026, 1381, 1533, 1542, 1594 |
| HpyCH4III | ACNGT | 4 cut(s) | 723, 1043, 1185, 2887 |
| HpyCH4IV | ACGT | 8 cut(s) | 86, 381, 709, 1005, 1893, 2298, 2378, 2428 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 28, 31, 671, 680, 922, 1198, 1276, 1285, 2291 |
| HpyF3I | CTNAG | 2 cut(s) | 164, 789 |
| HpySE526I | ACGT | 8 cut(s) | 86, 381, 709, 1005, 1893, 2298, 2378, 2428 |
| HspAI | GCGC | 1 cut(s) | 2267 |
| KpnI | GGTACC | 1 cut(s) | 1302 |
| LmnI | GCTCC | 7 cut(s) | 76, 142, 815, 1225, 1275, 1760, 1880 |
| Lsp1109I | GCAGC | 6 cut(s) | 18, 34, 40, 851, 1210, 1830 |
| MaeI | CTAG | 6 cut(s) | 1596, 1877, 1922, 1928, 1964, 2804 |
| MaeII | ACGT | 8 cut(s) | 86, 381, 709, 1005, 1893, 2298, 2378, 2428 |
| MfeI | CAATTG | 1 cut(s) | 2649 |
| MflI | RGATCY | 3 cut(s) | 1450, 1810, 1973 |
| MhlI | GDGCHC | 5 cut(s) | 81, 165, 839, 1395, 2370 |
| MlyI | GAGTC | 2 cut(s) | 1120, 2828 |
| MmeI | TCCRAC | 2 cut(s) | 1738, 2283 |
| Mph1103I | ATGCAT | 3 cut(s) | 610, 1099, 1401 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2007 |
| MslI | CAYNNNNRTG | 4 cut(s) | 296, 779, 1404, 2696 |
| MspA1I | CMGCKG | 3 cut(s) | 25, 31, 614 |
| MspCI | CTTAAG | 1 cut(s) | 2516 |
| MspI | CCGG | 7 cut(s) | 50, 269, 453, 985, 2528, 2852, 2877 |
| MspR9I | CCNGG | 8 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737, 2878 |
| MunI | CAATTG | 1 cut(s) | 2649 |
| Mva1269I | GAATGC | 6 cut(s) | 105, 117, 280, 685, 1261, 1867 |
| MvaI | CCWGG | 7 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 28, 31, 671, 680, 922, 1198, 1276, 1285, 2291 |
| NciI | CCSGG | 1 cut(s) | 2878 |
| NcoI | CCATGG | 3 cut(s) | 819, 2160, 2341 |
| NheI | GCTAGC | 1 cut(s) | 1963 |
| NlaIV | GGNNCC | 7 cut(s) | 503, 817, 1117, 1300, 1392, 1762, 2502 |
| NmuCI | GTSAC | 4 cut(s) | 848, 2088, 2555, 2847 |
| NsbI | TGCGCA | 1 cut(s) | 2268 |
| NsiI | ATGCAT | 3 cut(s) | 610, 1099, 1401 |
| NspI | RCATGY | 3 cut(s) | 899, 1403, 2697 |
| OliI | CACNNNNGTG | 1 cut(s) | 2696 |
| PagI | TCATGA | 3 cut(s) | 291, 1363, 2112 |
| PciI | ACATGT | 1 cut(s) | 2693 |
| PctI | GAATGC | 6 cut(s) | 105, 117, 280, 685, 1261, 1867 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2007 |
| PfeI | GAWTC | 5 cut(s) | 743, 970, 2069, 2399, 2707 |
| PflFI | GACNNNGTC | 2 cut(s) | 721, 1004 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 339 |
| PfoI | TCCNGGA | 4 cut(s) | 139, 958, 1291, 2876 |
| PinAI | ACCGGT | 2 cut(s) | 49, 2851 |
| PkrI | GCNGC | 7 cut(s) | 24, 27, 30, 33, 866, 1200, 1820 |
| PleI | GAGTC | 2 cut(s) | 1120, 2828 |
| PpsI | GAGTC | 2 cut(s) | 1120, 2828 |
| PscI | ACATGT | 1 cut(s) | 2693 |
| PshBI | ATTAAT | 2 cut(s) | 1545, 1650 |
| Psp124BI | GAGCTC | 3 cut(s) | 81, 165, 2370 |
| Psp6I | CCWGG | 7 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735 |
| PspEI | GGTNACC | 2 cut(s) | 204, 848 |
| PspGI | CCWGG | 7 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735 |
| PspN4I | GGNNCC | 7 cut(s) | 503, 817, 1117, 1300, 1392, 1762, 2502 |
| PspPI | GGNCC | 1 cut(s) | 1013 |
| PstNI | CAGNNNCTG | 1 cut(s) | 721 |
| PsuI | RGATCY | 3 cut(s) | 1450, 1810, 1973 |
| PsyI | GACNNNGTC | 2 cut(s) | 721, 1004 |
| PvuII | CAGCTG | 2 cut(s) | 31, 614 |
| RsaI | GTAC | 6 cut(s) | 638, 894, 1045, 1145, 1300, 1717 |
| RsaNI | GTAC | 6 cut(s) | 637, 893, 1044, 1144, 1299, 1716 |
| RseI | CAYNNNNRTG | 4 cut(s) | 296, 779, 1404, 2696 |
| SacI | GAGCTC | 3 cut(s) | 81, 165, 2370 |
| SatI | GCNGC | 7 cut(s) | 23, 26, 29, 32, 865, 1199, 1819 |
| Sau96I | GGNCC | 1 cut(s) | 1013 |
| SchI | GAGTC | 2 cut(s) | 1120, 2828 |
| ScrFI | CCNGG | 8 cut(s) | 141, 960, 1053, 1281, 1293, 1815, 2737, 2878 |
| SduI | GDGCHC | 5 cut(s) | 81, 165, 839, 1395, 2370 |
| SfcI | CTRYAG | 1 cut(s) | 900 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2851 |
| SinI | GGWCC | 1 cut(s) | 1013 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 296, 779, 1404, 2696 |
| SmlI | CTYRAG | 8 cut(s) | 256, 1020, 1029, 1071, 1703, 2279, 2414, 2516 |
| SmoI | CTYRAG | 8 cut(s) | 256, 1020, 1029, 1071, 1703, 2279, 2414, 2516 |
| SsiI | CCGC | 5 cut(s) | 25, 98, 1358, 2209, 2294 |
| SspMI | CTAG | 6 cut(s) | 1596, 1877, 1922, 1928, 1964, 2804 |
| SstI | GAGCTC | 3 cut(s) | 81, 165, 2370 |
| StyD4I | CCNGG | 8 cut(s) | 139, 958, 1051, 1279, 1291, 1813, 2735, 2876 |
| StyI | CCWWGG | 5 cut(s) | 819, 1009, 1876, 2160, 2341 |
| TaaI | ACNGT | 4 cut(s) | 723, 1043, 1185, 2887 |
| TaiI | ACGT | 8 cut(s) | 89, 384, 712, 1008, 1896, 2301, 2381, 2431 |
| TaqI | TCGA | 2 cut(s) | 159, 685 |
| TatI | WGTACW | 2 cut(s) | 636, 1715 |
| TauI | GCSGC | 1 cut(s) | 28 |
| TfiI | GAWTC | 5 cut(s) | 743, 970, 2069, 2399, 2707 |
| TscAI | CASTG | 1 cut(s) | 726 |
| TseFI | GTSAC | 4 cut(s) | 848, 2088, 2555, 2847 |
| TseI | GCWGC | 6 cut(s) | 22, 28, 31, 864, 1198, 1818 |
| Tsp45I | GTSAC | 4 cut(s) | 848, 2088, 2555, 2847 |
| TspGWI | ACGGA | 2 cut(s) | 99, 1262 |
| TspRI | CASTG | 1 cut(s) | 726 |
| Tth111I | GACNNNGTC | 2 cut(s) | 721, 1004 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 339 |
| Vha464I | CTTAAG | 1 cut(s) | 2516 |
| VpaK11BI | GGWCC | 1 cut(s) | 1013 |
| VspI | ATTAAT | 2 cut(s) | 1545, 1650 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 138, 1074 |
| XapI | RAATTY | 8 cut(s) | 239, 907, 1697, 1791, 2080, 2165, 2230, 2273 |
| XceI | RCATGY | 3 cut(s) | 899, 1403, 2697 |
| XmaJI | CCTAGG | 1 cut(s) | 1876 |
| XmiI | GTMKAC | 2 cut(s) | 2142, 2441 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2007 |
| XspI | CTAG | 6 cut(s) | 1596, 1877, 1922, 1928, 1964, 2804 |
| Zsp2I | ATGCAT | 3 cut(s) | 610, 1099, 1401 |