RNA splicing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 4 cut(s) | 30, 86, 262, 368 |
| AgsI | TTSAA | 3 cut(s) | 49, 242, 377 |
| AhlI | ACTAGT | 1 cut(s) | 218 |
| AluBI | AGCT | 2 cut(s) | 277, 337 |
| AluI | AGCT | 2 cut(s) | 277, 337 |
| Alw21I | GWGCWC | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 69 |
| AspS9I | GGNCC | 3 cut(s) | 34, 54, 110 |
| AvaII | GGWCC | 3 cut(s) | 34, 54, 110 |
| BanII | GRGCYC | 1 cut(s) | 279 |
| Bbv12I | GWGCWC | 1 cut(s) | 279 |
| BceAI | ACGGC | 1 cut(s) | 8 |
| BcuI | ACTAGT | 1 cut(s) | 218 |
| BfaI | CTAG | 1 cut(s) | 219 |
| BlpI | GCTNAGC | 1 cut(s) | 273 |
| Bme18I | GGWCC | 3 cut(s) | 34, 54, 110 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 54, 110 |
| BmiI | GGNNCC | 1 cut(s) | 35 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 3 cut(s) | 90, 192, 263 |
| BsaJI | CCNNGG | 1 cut(s) | 261 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 30, 86, 262, 368 |
| Bse1I | ACTGG | 1 cut(s) | 334 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseDI | CCNNGG | 1 cut(s) | 261 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 30, 86, 262, 368 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseNI | ACTGG | 1 cut(s) | 334 |
| BseRI | GAGGAG | 1 cut(s) | 129 |
| BsiHKAI | GWGCWC | 1 cut(s) | 279 |
| BslFI | GGGAC | 2 cut(s) | 47, 306 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 30, 86, 262, 368 |
| BsmFI | GGGAC | 2 cut(s) | 47, 306 |
| Bsp1286I | GDGCHC | 1 cut(s) | 279 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 273 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspHI | TCATGA | 2 cut(s) | 309, 322 |
| BspLI | GGNNCC | 1 cut(s) | 35 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 334 |
| BssECI | CCNNGG | 1 cut(s) | 261 |
| BssT1I | CCWWGG | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 15 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 283 |
| BstNSI | RCATGY | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 15 |
| CciI | TCATGA | 2 cut(s) | 309, 322 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 54, 110 |
| CviAII | CATG | 3 cut(s) | 133, 310, 323 |
| CviJI | RGCY | 3 cut(s) | 277, 337, 372 |
| CviKI_1 | RGCY | 3 cut(s) | 277, 337, 372 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| Eco130I | CCWWGG | 1 cut(s) | 261 |
| Eco24I | GRGCYC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 3 cut(s) | 34, 54, 110 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoO109I | RGGNCCY | 1 cut(s) | 110 |
| EcoT14I | CCWWGG | 1 cut(s) | 261 |
| EcoT38I | GRGCYC | 1 cut(s) | 279 |
| ErhI | CCWWGG | 1 cut(s) | 261 |
| FaeI | CATG | 3 cut(s) | 136, 313, 326 |
| FaiI | YATR | 5 cut(s) | 28, 134, 174, 311, 324 |
| FaqI | GGGAC | 2 cut(s) | 47, 306 |
| FatI | CATG | 3 cut(s) | 132, 309, 322 |
| FriOI | GRGCYC | 1 cut(s) | 279 |
| FspBI | CTAG | 1 cut(s) | 219 |
| Hin1II | CATG | 3 cut(s) | 136, 313, 326 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 2 cut(s) | 54, 304 |
| Hpy188I | TCNGA | 1 cut(s) | 75 |
| Hpy188III | TCNNGA | 3 cut(s) | 280, 310, 323 |
| Hpy8I | GTNNAC | 2 cut(s) | 54, 304 |
| HpyAV | CCTTC | 1 cut(s) | 371 |
| HpyCH4IV | ACGT | 2 cut(s) | 100, 150 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 283 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| HpySE526I | ACGT | 2 cut(s) | 100, 150 |
| Hsp92II | CATG | 3 cut(s) | 136, 313, 326 |
| LpnPI | CCDG | 1 cut(s) | 315 |
| MaeI | CTAG | 1 cut(s) | 219 |
| MaeII | ACGT | 2 cut(s) | 100, 150 |
| MhlI | GDGCHC | 1 cut(s) | 279 |
| MluCI | AATT | 2 cut(s) | 199, 351 |
| MmeI | TCCRAC | 1 cut(s) | 121 |
| MnlI | CCTC | 8 cut(s) | 24, 90, 114, 123, 147, 150, 181, 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 283 |
| NlaIII | CATG | 3 cut(s) | 136, 313, 326 |
| NlaIV | GGNNCC | 1 cut(s) | 35 |
| NspI | RCATGY | 1 cut(s) | 136 |
| PagI | TCATGA | 2 cut(s) | 309, 322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 69 |
| PfeI | GAWTC | 1 cut(s) | 157 |
| PpuMI | RGGWCCY | 1 cut(s) | 110 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| Psp5II | RGGWCCY | 1 cut(s) | 110 |
| PspN4I | GGNNCC | 1 cut(s) | 35 |
| PspPI | GGNCC | 3 cut(s) | 34, 54, 110 |
| PspPPI | RGGWCCY | 1 cut(s) | 110 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| Sau96I | GGNCC | 3 cut(s) | 34, 54, 110 |
| SduI | GDGCHC | 1 cut(s) | 279 |
| SetI | ASST | 7 cut(s) | 103, 115, 130, 153, 279, 339, 382 |
| SinI | GGWCC | 3 cut(s) | 34, 54, 110 |
| SmlI | CTYRAG | 3 cut(s) | 105, 207, 278 |
| SmoI | CTYRAG | 3 cut(s) | 105, 207, 278 |
| SpeI | ACTAGT | 1 cut(s) | 218 |
| Sse9I | AATT | 2 cut(s) | 199, 351 |
| SspMI | CTAG | 1 cut(s) | 219 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| StyI | CCWWGG | 1 cut(s) | 261 |
| TaiI | ACGT | 2 cut(s) | 103, 153 |
| TasI | AATT | 2 cut(s) | 199, 351 |
| TfiI | GAWTC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 4 cut(s) | 78, 298, 311, 339 |
| VpaK11BI | GGWCC | 3 cut(s) | 34, 54, 110 |
| XceI | RCATGY | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 69 |
| XspI | CTAG | 1 cut(s) | 219 |