transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 14 - 106 | 1.1e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 833 |
| AciI | CCGC | 1 cut(s) | 391 |
| AcoI | YGGCCR | 2 cut(s) | 300, 328 |
| AcsI | RAATTY | 4 cut(s) | 173, 609, 631, 678 |
| AcuI | CTGAAG | 1 cut(s) | 572 |
| AfaI | GTAC | 1 cut(s) | 439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 833 |
| AgsI | TTSAA | 9 cut(s) | 10, 29, 172, 181, 338, 595, 698, 815, 868 |
| AjnI | CCWGG | 2 cut(s) | 330, 745 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 860, 892 |
| AluBI | AGCT | 3 cut(s) | 443, 494, 754 |
| AluI | AGCT | 3 cut(s) | 443, 494, 754 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 3 cut(s) | 264, 300, 328 |
| ApeKI | GCWGC | 1 cut(s) | 859 |
| ApoI | RAATTY | 4 cut(s) | 173, 609, 631, 678 |
| AseI | ATTAAT | 1 cut(s) | 479 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 609, 662 |
| AspA2I | CCTAGG | 1 cut(s) | 212 |
| AspS9I | GGNCC | 3 cut(s) | 62, 773, 823 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 3 cut(s) | 62, 773, 823 |
| AvrII | CCTAGG | 1 cut(s) | 212 |
| BalI | TGGCCA | 2 cut(s) | 302, 330 |
| BbvI | GCAGC | 1 cut(s) | 871 |
| BccI | CCATC | 3 cut(s) | 224, 759, 914 |
| BciT130I | CCWGG | 2 cut(s) | 332, 747 |
| BfaI | CTAG | 7 cut(s) | 213, 636, 702, 729, 762, 893, 914 |
| BfmI | CTRYAG | 2 cut(s) | 472, 507 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 533 |
| BisI | GCNGC | 1 cut(s) | 860 |
| BlnI | CCTAGG | 1 cut(s) | 212 |
| BlsI | GCNGC | 1 cut(s) | 861 |
| Bme1390I | CCNGG | 2 cut(s) | 332, 747 |
| Bme18I | GGWCC | 3 cut(s) | 62, 773, 823 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 773, 823 |
| BmiI | GGNNCC | 2 cut(s) | 63, 825 |
| BmrFI | CCNGG | 2 cut(s) | 332, 747 |
| BmsI | GCATC | 2 cut(s) | 409, 556 |
| BsaJI | CCNNGG | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 833 |
| Bse1I | ACTGG | 1 cut(s) | 570 |
| BseBI | CCWGG | 2 cut(s) | 332, 747 |
| BseDI | CCNNGG | 1 cut(s) | 212 |
| BseGI | GGATG | 1 cut(s) | 904 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 833 |
| BseNI | ACTGG | 1 cut(s) | 570 |
| BseXI | GCAGC | 1 cut(s) | 871 |
| BshFI | GGCC | 3 cut(s) | 266, 302, 330 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BslFI | GGGAC | 1 cut(s) | 451 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 833 |
| BsmFI | GGGAC | 1 cut(s) | 451 |
| BsnI | GGCC | 3 cut(s) | 266, 302, 330 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp143I | GATC | 1 cut(s) | 537 |
| BspACI | CCGC | 1 cut(s) | 391 |
| BspANI | GGCC | 3 cut(s) | 266, 302, 330 |
| BspLI | GGNNCC | 2 cut(s) | 63, 825 |
| BsrI | ACTGG | 1 cut(s) | 570 |
| BssECI | CCNNGG | 1 cut(s) | 212 |
| BssMI | GATC | 1 cut(s) | 537 |
| BssT1I | CCWWGG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 2 cut(s) | 332, 747 |
| Bst4CI | ACNGT | 3 cut(s) | 166, 379, 437 |
| BstDEI | CTNAG | 1 cut(s) | 578 |
| BstF5I | GGATG | 1 cut(s) | 904 |
| BstKTI | GATC | 1 cut(s) | 540 |
| BstMBI | GATC | 1 cut(s) | 537 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 428, 533 |
| BstNI | CCWGG | 2 cut(s) | 332, 747 |
| BstSCI | CCNGG | 2 cut(s) | 330, 745 |
| BstSFI | CTRYAG | 2 cut(s) | 472, 507 |
| BstV1I | GCAGC | 1 cut(s) | 871 |
| BsuRI | GGCC | 3 cut(s) | 266, 302, 330 |
| BtsCI | GGATG | 1 cut(s) | 904 |
| BtsIMutI | CAGTG | 1 cut(s) | 384 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 773, 823 |
| Csp6I | GTAC | 1 cut(s) | 438 |
| CviAII | CATG | 2 cut(s) | 203, 668 |
| CviQI | GTAC | 1 cut(s) | 438 |
| DdeI | CTNAG | 1 cut(s) | 578 |
| DpnI | GATC | 1 cut(s) | 539 |
| DpnII | GATC | 1 cut(s) | 537 |
| DraI | TTTAAA | 1 cut(s) | 847 |
| EaeI | YGGCCR | 2 cut(s) | 300, 328 |
| Eco130I | CCWWGG | 1 cut(s) | 212 |
| Eco147I | AGGCCT | 1 cut(s) | 266 |
| Eco47I | GGWCC | 3 cut(s) | 62, 773, 823 |
| Eco57I | CTGAAG | 1 cut(s) | 572 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 823 |
| EcoRII | CCWGG | 2 cut(s) | 330, 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 212 |
| ErhI | CCWWGG | 1 cut(s) | 212 |
| FaeI | CATG | 2 cut(s) | 206, 671 |
| FaqI | GGGAC | 1 cut(s) | 451 |
| FatI | CATG | 2 cut(s) | 202, 667 |
| FauNDI | CATATG | 1 cut(s) | 625 |
| Fnu4HI | GCNGC | 1 cut(s) | 860 |
| FokI | GGATG | 1 cut(s) | 911 |
| Fsp4HI | GCNGC | 1 cut(s) | 860 |
| FspBI | CTAG | 7 cut(s) | 213, 636, 702, 729, 762, 893, 914 |
| GluI | GCNGC | 1 cut(s) | 860 |
| HaeIII | GGCC | 3 cut(s) | 266, 302, 330 |
| Hin1II | CATG | 2 cut(s) | 206, 671 |
| HindIII | AAGCTT | 2 cut(s) | 492, 752 |
| HinfI | GANTC | 2 cut(s) | 10, 919 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 382 |
| Hpy188I | TCNGA | 1 cut(s) | 615 |
| Hpy188III | TCNNGA | 7 cut(s) | 198, 260, 541, 729, 762, 893, 914 |
| Hpy8I | GTNNAC | 1 cut(s) | 382 |
| HpyCH4III | ACNGT | 3 cut(s) | 166, 379, 437 |
| HpyCH4V | TGCA | 4 cut(s) | 249, 422, 736, 932 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 428, 533 |
| HpyF3I | CTNAG | 1 cut(s) | 578 |
| Hsp92II | CATG | 2 cut(s) | 206, 671 |
| Kzo9I | GATC | 1 cut(s) | 537 |
| LpnPI | CCDG | 7 cut(s) | 317, 344, 519, 583, 732, 756, 759 |
| Lsp1109I | GCAGC | 1 cut(s) | 871 |
| LweI | GCATC | 2 cut(s) | 409, 556 |
| MaeI | CTAG | 7 cut(s) | 213, 636, 702, 729, 762, 893, 914 |
| MaeIII | GTNAC | 2 cut(s) | 286, 497 |
| MalI | GATC | 1 cut(s) | 539 |
| MboI | GATC | 1 cut(s) | 537 |
| MboII | GAAGA | 2 cut(s) | 286, 617 |
| MfeI | CAATTG | 1 cut(s) | 456 |
| MlsI | TGGCCA | 2 cut(s) | 302, 330 |
| MluNI | TGGCCA | 2 cut(s) | 302, 330 |
| MnlI | CCTC | 6 cut(s) | 82, 124, 256, 267, 814, 889 |
| Mox20I | TGGCCA | 2 cut(s) | 302, 330 |
| MroXI | GAANNNNTTC | 2 cut(s) | 609, 662 |
| MscI | TGGCCA | 2 cut(s) | 302, 330 |
| MseI | TTAA | 4 cut(s) | 479, 549, 786, 846 |
| Msp20I | TGGCCA | 2 cut(s) | 302, 330 |
| MspR9I | CCNGG | 2 cut(s) | 332, 747 |
| MunI | CAATTG | 1 cut(s) | 456 |
| MvaI | CCWGG | 2 cut(s) | 332, 747 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 428, 533 |
| NdeI | CATATG | 1 cut(s) | 625 |
| NdeII | GATC | 1 cut(s) | 537 |
| NlaIII | CATG | 2 cut(s) | 206, 671 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 825 |
| NmuCI | GTSAC | 1 cut(s) | 497 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PceI | AGGCCT | 1 cut(s) | 266 |
| PdmI | GAANNNNTTC | 2 cut(s) | 609, 662 |
| PfeI | GAWTC | 2 cut(s) | 10, 919 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 833 |
| PkrI | GCNGC | 1 cut(s) | 861 |
| PpuMI | RGGWCCY | 1 cut(s) | 823 |
| PshBI | ATTAAT | 1 cut(s) | 479 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| Psp5II | RGGWCCY | 1 cut(s) | 823 |
| Psp6I | CCWGG | 2 cut(s) | 330, 745 |
| PspGI | CCWGG | 2 cut(s) | 330, 745 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 825 |
| PspPI | GGNCC | 3 cut(s) | 62, 773, 823 |
| PspPPI | RGGWCCY | 1 cut(s) | 823 |
| RsaI | GTAC | 1 cut(s) | 439 |
| RsaNI | GTAC | 1 cut(s) | 438 |
| SaqAI | TTAA | 4 cut(s) | 479, 549, 786, 846 |
| SatI | GCNGC | 1 cut(s) | 860 |
| Sau3AI | GATC | 1 cut(s) | 537 |
| Sau96I | GGNCC | 3 cut(s) | 62, 773, 823 |
| ScrFI | CCNGG | 2 cut(s) | 332, 747 |
| SetI | ASST | 9 cut(s) | 214, 336, 445, 496, 508, 695, 703, 756, 775 |
| SfaNI | GCATC | 2 cut(s) | 409, 556 |
| SfcI | CTRYAG | 2 cut(s) | 472, 507 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SinI | GGWCC | 3 cut(s) | 62, 773, 823 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SseBI | AGGCCT | 1 cut(s) | 266 |
| SsiI | CCGC | 1 cut(s) | 391 |
| SspI | AATATT | 3 cut(s) | 33, 190, 886 |
| SspMI | CTAG | 7 cut(s) | 213, 636, 702, 729, 762, 893, 914 |
| StuI | AGGCCT | 1 cut(s) | 266 |
| StyD4I | CCNGG | 2 cut(s) | 330, 745 |
| StyI | CCWWGG | 1 cut(s) | 212 |
| TaaI | ACNGT | 3 cut(s) | 166, 379, 437 |
| TaqI | TCGA | 2 cut(s) | 199, 261 |
| TfiI | GAWTC | 2 cut(s) | 10, 919 |
| Tru1I | TTAA | 4 cut(s) | 479, 549, 786, 846 |
| Tru9I | TTAA | 4 cut(s) | 479, 549, 786, 846 |
| TscAI | CASTG | 1 cut(s) | 384 |
| TseFI | GTSAC | 1 cut(s) | 497 |
| TseI | GCWGC | 1 cut(s) | 859 |
| Tsp45I | GTSAC | 1 cut(s) | 497 |
| TspDTI | ATGAA | 6 cut(s) | 287, 612, 633, 642, 671, 915 |
| TspGWI | ACGGA | 1 cut(s) | 54 |
| TspRI | CASTG | 1 cut(s) | 384 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 833 |
| VpaK11BI | GGWCC | 3 cut(s) | 62, 773, 823 |
| VspI | ATTAAT | 1 cut(s) | 479 |
| XapI | RAATTY | 4 cut(s) | 173, 609, 631, 678 |
| XbaI | TCTAGA | 4 cut(s) | 728, 761, 892, 913 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XmaJI | CCTAGG | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 2 cut(s) | 609, 662 |
| XspI | CTAG | 7 cut(s) | 213, 636, 702, 729, 762, 893, 914 |