transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 263 |
| AccI | GTMKAC | 2 cut(s) | 237, 885 |
| AciI | CCGC | 1 cut(s) | 698 |
| AclI | AACGTT | 1 cut(s) | 118 |
| AcoI | YGGCCR | 1 cut(s) | 699 |
| AcsI | RAATTY | 2 cut(s) | 1070, 1334 |
| AfaI | GTAC | 1 cut(s) | 640 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 247 |
| AflIII | ACRYGT | 1 cut(s) | 1358 |
| AgsI | TTSAA | 9 cut(s) | 94, 115, 128, 218, 338, 385, 1057, 1075, 1096 |
| AjnI | CCWGG | 1 cut(s) | 867 |
| AluBI | AGCT | 3 cut(s) | 671, 1113, 1320 |
| AluI | AGCT | 3 cut(s) | 671, 1113, 1320 |
| Alw26I | GTCTC | 1 cut(s) | 1130 |
| AoxI | GGCC | 1 cut(s) | 699 |
| ApeKI | GCWGC | 3 cut(s) | 499, 668, 1193 |
| ApoI | RAATTY | 2 cut(s) | 1070, 1334 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 94, 126 |
| AseI | ATTAAT | 1 cut(s) | 857 |
| AspS9I | GGNCC | 1 cut(s) | 1001 |
| AsuC2I | CCSGG | 1 cut(s) | 975 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 1090 |
| AvaII | GGWCC | 1 cut(s) | 1001 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 630, 663 |
| BbsI | GAAGAC | 1 cut(s) | 953 |
| BbvI | GCAGC | 3 cut(s) | 511, 680, 1180 |
| BccI | CCATC | 1 cut(s) | 714 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 121, 155, 1318, 1352 |
| BciT130I | CCWGG | 1 cut(s) | 869 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcnI | CCSGG | 1 cut(s) | 975 |
| BcoDI | GTCTC | 1 cut(s) | 1130 |
| BfaI | CTAG | 3 cut(s) | 188, 540, 708 |
| BfuAI | ACCTGC | 1 cut(s) | 263 |
| BisI | GCNGC | 4 cut(s) | 500, 669, 699, 1194 |
| BlsI | GCNGC | 4 cut(s) | 501, 670, 700, 1195 |
| Bme1390I | CCNGG | 2 cut(s) | 869, 975 |
| Bme18I | GGWCC | 1 cut(s) | 1001 |
| BmgT120I | GGNCC | 1 cut(s) | 1001 |
| BmiI | GGNNCC | 4 cut(s) | 414, 440, 1003, 1159 |
| BmrFI | CCNGG | 2 cut(s) | 869, 975 |
| BmsI | GCATC | 6 cut(s) | 355, 454, 544, 545, 1096, 1192 |
| BpiI | GAAGAC | 1 cut(s) | 953 |
| BpmI | CTGGAG | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 1 cut(s) | 659 |
| BpuMI | CCSGG | 1 cut(s) | 975 |
| Bsa29I | ATCGAT | 2 cut(s) | 1090, 1171 |
| BsaI | GGTCTC | 1 cut(s) | 1130 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 397, 427 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 247 |
| Bse1I | ACTGG | 1 cut(s) | 881 |
| Bse3DI | GCAATG | 2 cut(s) | 85, 821 |
| BseBI | CCWGG | 1 cut(s) | 869 |
| BseCI | ATCGAT | 2 cut(s) | 1090, 1171 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 2 cut(s) | 316, 729 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 247 |
| BseMI | GCAATG | 2 cut(s) | 85, 821 |
| BseMII | CTCAG | 1 cut(s) | 1287 |
| BseNI | ACTGG | 1 cut(s) | 881 |
| BseRI | GAGGAG | 1 cut(s) | 1148 |
| BseXI | GCAGC | 3 cut(s) | 511, 680, 1180 |
| BsgI | GTGCAG | 1 cut(s) | 1056 |
| BshFI | GGCC | 1 cut(s) | 701 |
| BshVI | ATCGAT | 2 cut(s) | 1090, 1171 |
| BsiSI | CCGG | 2 cut(s) | 974, 1190 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 247 |
| BsmAI | GTCTC | 1 cut(s) | 1130 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 1 cut(s) | 701 |
| Bso31I | GGTCTC | 1 cut(s) | 1130 |
| Bsp143I | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 1 cut(s) | 698 |
| BspANI | GGCC | 1 cut(s) | 701 |
| BspCNI | CTCAG | 1 cut(s) | 1286 |
| BspDI | ATCGAT | 2 cut(s) | 1090, 1171 |
| BspHI | TCATGA | 1 cut(s) | 895 |
| BspLI | GGNNCC | 4 cut(s) | 414, 440, 1003, 1159 |
| BspMI | ACCTGC | 1 cut(s) | 263 |
| BspTNI | GGTCTC | 1 cut(s) | 1130 |
| BsrDI | GCAATG | 2 cut(s) | 85, 821 |
| BsrI | ACTGG | 1 cut(s) | 881 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| BssNAI | GTATAC | 1 cut(s) | 886 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst1107I | GTATAC | 1 cut(s) | 886 |
| Bst2UI | CCWGG | 1 cut(s) | 869 |
| Bst4CI | ACNGT | 1 cut(s) | 1381 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1233 |
| BstC8I | GCNNGC | 1 cut(s) | 370 |
| BstDEI | CTNAG | 3 cut(s) | 231, 797, 1273 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 2 cut(s) | 316, 729 |
| BstKTI | GATC | 5 cut(s) | 85, 626, 664, 1171, 1175 |
| BstMAI | GTCTC | 1 cut(s) | 1130 |
| BstMBI | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 485, 1233, 1326 |
| BstNI | CCWGG | 1 cut(s) | 869 |
| BstNSI | RCATGY | 2 cut(s) | 372, 1362 |
| BstSCI | CCNGG | 2 cut(s) | 867, 973 |
| BstV1I | GCAGC | 3 cut(s) | 511, 680, 1180 |
| BstV2I | GAAGAC | 1 cut(s) | 953 |
| BstZ17I | GTATAC | 1 cut(s) | 886 |
| Bsu15I | ATCGAT | 2 cut(s) | 1090, 1171 |
| BsuRI | GGCC | 1 cut(s) | 701 |
| BsuTUI | ATCGAT | 2 cut(s) | 1090, 1171 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 477 |
| BtsCI | GGATG | 2 cut(s) | 316, 729 |
| BtsIMutI | CAGTG | 2 cut(s) | 576, 1377 |
| BveI | ACCTGC | 1 cut(s) | 263 |
| Cac8I | GCNNGC | 1 cut(s) | 370 |
| CciI | TCATGA | 1 cut(s) | 895 |
| Cfr13I | GGNCC | 1 cut(s) | 1001 |
| ClaI | ATCGAT | 2 cut(s) | 1090, 1171 |
| Csp6I | GTAC | 1 cut(s) | 639 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 1366 |
| CviQI | GTAC | 1 cut(s) | 639 |
| DdeI | CTNAG | 3 cut(s) | 231, 797, 1273 |
| DpnI | GATC | 5 cut(s) | 84, 625, 663, 1170, 1174 |
| DpnII | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| EaeI | YGGCCR | 1 cut(s) | 699 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco31I | GGTCTC | 1 cut(s) | 1130 |
| Eco47I | GGWCC | 1 cut(s) | 1001 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoRI | GAATTC | 1 cut(s) | 1070 |
| EcoRII | CCWGG | 1 cut(s) | 867 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT22I | ATGCAT | 2 cut(s) | 370, 538 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 576, 608, 1202, 1234 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 2 cut(s) | 237, 885 |
| Fnu4HI | GCNGC | 4 cut(s) | 500, 669, 699, 1194 |
| FokI | GGATG | 2 cut(s) | 303, 736 |
| Fsp4HI | GCNGC | 4 cut(s) | 500, 669, 699, 1194 |
| FspBI | CTAG | 3 cut(s) | 188, 540, 708 |
| GluI | GCNGC | 4 cut(s) | 500, 669, 699, 1194 |
| GsuI | CTGGAG | 1 cut(s) | 414 |
| HaeIII | GGCC | 1 cut(s) | 701 |
| HapII | CCGG | 2 cut(s) | 974, 1190 |
| HinfI | GANTC | 4 cut(s) | 133, 754, 907, 1260 |
| HpaII | CCGG | 2 cut(s) | 974, 1190 |
| HphI | GGTGA | 2 cut(s) | 16, 1090 |
| Hpy166II | GTNNAC | 3 cut(s) | 238, 886, 989 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 102, 205, 472, 623, 835, 1276 |
| Hpy188III | TCNNGA | 5 cut(s) | 431, 688, 758, 896, 1067 |
| Hpy8I | GTNNAC | 3 cut(s) | 238, 886, 989 |
| HpyAV | CCTTC | 3 cut(s) | 452, 760, 931 |
| HpyCH4III | ACNGT | 1 cut(s) | 1381 |
| HpyCH4IV | ACGT | 4 cut(s) | 118, 985, 991, 1201 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 485, 1233, 1326 |
| HpyF3I | CTNAG | 3 cut(s) | 231, 797, 1273 |
| HpySE526I | ACGT | 4 cut(s) | 118, 985, 991, 1201 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| LmnI | GCTCC | 4 cut(s) | 377, 418, 438, 1270 |
| LpnPI | CCDG | 9 cut(s) | 233, 258, 444, 854, 881, 894, 987, 1047, 1203 |
| Lsp1109I | GCAGC | 3 cut(s) | 511, 680, 1180 |
| LweI | GCATC | 6 cut(s) | 355, 454, 544, 545, 1096, 1192 |
| MaeI | CTAG | 3 cut(s) | 188, 540, 708 |
| MaeII | ACGT | 4 cut(s) | 118, 985, 991, 1201 |
| MaeIII | GTNAC | 4 cut(s) | 158, 266, 981, 1214 |
| MalI | GATC | 5 cut(s) | 84, 625, 663, 1170, 1174 |
| MboI | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| MboII | GAAGA | 5 cut(s) | 43, 65, 953, 1178, 1261 |
| MmeI | TCCRAC | 2 cut(s) | 910, 974 |
| MnlI | CCTC | 7 cut(s) | 391, 438, 528, 808, 1038, 1126, 1217 |
| Mph1103I | ATGCAT | 2 cut(s) | 370, 538 |
| MseI | TTAA | 8 cut(s) | 107, 144, 171, 392, 563, 857, 951, 1396 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MspI | CCGG | 2 cut(s) | 974, 1190 |
| MspR9I | CCNGG | 2 cut(s) | 869, 975 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvaI | CCWGG | 1 cut(s) | 869 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 485, 1233, 1326 |
| NciI | CCSGG | 1 cut(s) | 975 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| NlaIV | GGNNCC | 4 cut(s) | 414, 440, 1003, 1159 |
| NmuCI | GTSAC | 2 cut(s) | 158, 266 |
| NsiI | ATGCAT | 2 cut(s) | 370, 538 |
| NspI | RCATGY | 2 cut(s) | 372, 1362 |
| PaeI | GCATGC | 1 cut(s) | 372 |
| PagI | TCATGA | 1 cut(s) | 895 |
| PciI | ACATGT | 1 cut(s) | 1358 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 476 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PfeI | GAWTC | 4 cut(s) | 133, 754, 907, 1260 |
| PkrI | GCNGC | 4 cut(s) | 501, 670, 700, 1195 |
| PscI | ACATGT | 1 cut(s) | 1358 |
| PshBI | ATTAAT | 1 cut(s) | 857 |
| Psp1406I | AACGTT | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 867 |
| PspGI | CCWGG | 1 cut(s) | 867 |
| PspN4I | GGNNCC | 4 cut(s) | 414, 440, 1003, 1159 |
| PspPI | GGNCC | 1 cut(s) | 1001 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 228, 260, 970, 1002 |
| RsaI | GTAC | 1 cut(s) | 640 |
| RsaNI | GTAC | 1 cut(s) | 639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SaqAI | TTAA | 8 cut(s) | 107, 144, 171, 392, 563, 857, 951, 1396 |
| SatI | GCNGC | 4 cut(s) | 500, 669, 699, 1194 |
| Sau3AI | GATC | 5 cut(s) | 82, 623, 661, 1168, 1172 |
| Sau96I | GGNCC | 1 cut(s) | 1001 |
| ScrFI | CCNGG | 2 cut(s) | 869, 975 |
| SfaNI | GCATC | 6 cut(s) | 355, 454, 544, 545, 1096, 1192 |
| SinI | GGWCC | 1 cut(s) | 1001 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 1 cut(s) | 674 |
| SmoI | CTYRAG | 1 cut(s) | 674 |
| SphI | GCATGC | 1 cut(s) | 372 |
| SsiI | CCGC | 1 cut(s) | 698 |
| SspMI | CTAG | 3 cut(s) | 188, 540, 708 |
| StyD4I | CCNGG | 2 cut(s) | 867, 973 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaaI | ACNGT | 1 cut(s) | 1381 |
| TaiI | ACGT | 4 cut(s) | 121, 988, 994, 1204 |
| TaqI | TCGA | 7 cut(s) | 81, 354, 450, 718, 802, 1090, 1171 |
| TauI | GCSGC | 1 cut(s) | 701 |
| TfiI | GAWTC | 4 cut(s) | 133, 754, 907, 1260 |
| Tru1I | TTAA | 8 cut(s) | 107, 144, 171, 392, 563, 857, 951, 1396 |
| Tru9I | TTAA | 8 cut(s) | 107, 144, 171, 392, 563, 857, 951, 1396 |
| TscAI | CASTG | 2 cut(s) | 583, 1384 |
| TseFI | GTSAC | 2 cut(s) | 158, 266 |
| TseI | GCWGC | 3 cut(s) | 499, 668, 1193 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 266 |
| TspDTI | ATGAA | 7 cut(s) | 37, 66, 154, 280, 884, 1179, 1346 |
| TspRI | CASTG | 2 cut(s) | 583, 1384 |
| VpaK11BI | GGWCC | 1 cut(s) | 1001 |
| VspI | ATTAAT | 1 cut(s) | 857 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 2 cut(s) | 1070, 1334 |
| XceI | RCATGY | 2 cut(s) | 372, 1362 |
| XmiI | GTMKAC | 2 cut(s) | 237, 885 |
| XspI | CTAG | 3 cut(s) | 188, 540, 708 |
| Zsp2I | ATGCAT | 2 cut(s) | 370, 538 |